Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17246 Brassica carinata HOM05D005726 ORTHO05D001733 2.9e-55 218.4 117 100.0
BolC2t11266H Brassica oleracea HOM05D005726 ORTHO05D001733 2.9e-55 218.4 117 100.0
C02p51810 Brassica napus HOM05D005726 ORTHO05D001733 9.4e-54 213.4 117 97.4
A02p33660 Brassica napus HOM05D005726 ORTHO05D001733 4.7e-53 211.1 117 96.6
BraA02t08386Z Brassica rapa HOM05D005726 ORTHO05D001733 1.0e-52 209.9 117 95.7
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 5.0e-47 191.0 119 86.6
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 5.0e-47 191.0 119 86.6
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 4.2e-46 188.0 114 89.5
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 5.5e-46 187.6 119 85.7
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 2.7e-45 185.3 119 82.4
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 2.7e-45 185.3 119 82.4
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 2.3e-44 182.2 119 81.5
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 1.4e-41 172.9 119 79.0
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 1.8e-41 172.6 119 78.2
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 1.8e-41 172.6 119 78.2
Thhalv10015257m.g Eutrema salsugineum HOM05D005726 ORTHO05D001733 2.3e-39 165.6 120 76.7
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 2.9e-39 165.2 119 74.8
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 1.7e-34 149.4 119 67.2
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 3.3e-30 135.2 107 64.5
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 1.1e-14 83.6 107 44.9
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 7.3e-14 80.9 105 43.8
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 5.2e-12 74.7 109 42.2
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 8.9e-12 73.9 107 41.1
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 1.2e-11 73.6 108 40.7
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.2e-11 73.6 109 41.3
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 1.5e-11 73.2 106 43.4
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 2.0e-11 72.8 109 40.4
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 4.4e-11 71.6 108 37.0
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 5.8e-11 71.2 104 38.5
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 9.9e-11 70.5 111 43.2
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 1.3e-10 70.1 113 42.5
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 2.9e-10 68.9 113 38.1
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 2.9e-10 68.9 110 41.8
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 3.7e-10 68.6 113 35.4
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 3.7e-10 68.6 111 40.5
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 4.9e-10 68.2 108 35.2
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 6.4e-10 67.8 107 39.3
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 8.3e-10 67.4 114 38.6
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 1.1e-09 67.0 107 36.4
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 1.1e-09 67.0 113 42.5
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 1.4e-09 66.6 104 38.5
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 1.9e-09 66.2 113 38.1
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.9e-09 66.2 107 36.4
SHI08068 Sapria himalayana HOM05D005726 ORTHO05D001733 1.9e-09 66.2 105 41.0
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 9.2e-09 63.9 107 38.3
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.2e-08 63.5 106 37.7
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 1.6e-08 63.2 110 36.4
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 2.1e-08 62.8 108 37.0
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.7e-08 62.4 109 38.5
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 2.7e-08 62.4 113 38.1
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 3.5e-08 62.0 103 35.9
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 3.5e-08 62.0 116 35.3
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 4.6e-08 61.6 106 38.7
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 4.6e-08 61.6 116 35.3
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 4.6e-08 61.6 106 36.8
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 4.6e-08 61.6 105 36.2
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 6.0e-08 61.2 113 38.9
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 7.8e-08 60.8 104 34.6
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 7.8e-08 60.8 118 42.4
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 7.8e-08 60.8 101 40.6
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.3e-07 60.1 108 35.2
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 1.7e-07 59.7 114 36.8
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 2.3e-07 59.3 108 34.3
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 2.3e-07 59.3 120 33.3
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 3.0e-07 58.9 111 38.7
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 3.9e-07 58.5 104 34.6
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 5.1e-07 58.2 107 36.4
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 5.1e-07 58.2 111 38.7
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 6.6e-07 57.8 104 36.5
Migut.C00838 Erythranthe guttata HOM05D005726 ORTHO05D001733 6.6e-07 57.8 110 34.5
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 6.6e-07 57.8 111 37.8
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 6.6e-07 57.8 111 38.7
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 6.6e-07 57.8 108 34.3
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 6.6e-07 57.8 108 34.3
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 8.6e-07 57.4 123 34.1
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 1.5e-06 56.6 123 33.3
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 1.5e-06 56.6 107 34.6
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 1.9e-06 56.2 106 33.0
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.9e-06 56.2 110 38.2
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.9e-06 56.2 110 38.2
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 1.9e-06 56.2 110 38.2
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 1.9e-06 56.2 116 33.6
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 2.5e-06 55.8 106 33.0
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 2.5e-06 55.8 103 37.9
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 2.5e-06 55.8 117 35.0
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 4.3e-06 55.1 111 34.2
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 5.6e-06 54.7 92 38.0
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 5.6e-06 54.7 112 35.7
ClCG02G004310 Citrullus lanatus HOM05D007714 ORTHO05D009659 7.3e-06 54.3 102 36.3
TPR.G16147 Trifolium pratense HOM05D003064 ORTHO05D001733 7.3e-06 54.3 112 34.8
BcaB07g30277 Brassica carinata HOM05D005726 ORTHO05D001733 9.5e-06 53.9 37 83.8
TWI38G0681 Tripterygium wilfordii HOM05D003064 ORTHO05D001733 9.5e-06 53.9 109 38.5


User provided reference genes

Program Settings