Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17244 Brassica carinata HOM05D003025 ORTHO05D003305 7.7e-71 270.4 139 100.0
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 1.4e-59 233.0 122 97.5
BolC2t11264H Brassica oleracea HOM05D003025 ORTHO05D003305 3.1e-27 125.6 67 98.5
Thhalv10004181m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 1.2e-26 123.6 164 48.8
Sp2g14630 Schrenkiella parvula HOM05D003025 ORTHO05D003305 1.1e-24 117.1 124 55.6
Aa31LG2G6910 Aethionema arabicum HOM05D003025 ORTHO05D003305 5.4e-24 114.8 184 46.2
BcaC06g31142 Brassica carinata HOM05D003025 ORTHO05D003305 7.1e-24 114.4 183 49.2
CARHR146220 Cardamine hirsuta HOM05D003025 ORTHO05D003305 1.0e-22 110.5 131 51.1
BraA06t27196Z Brassica rapa HOM05D003025 ORTHO05D003305 1.3e-22 110.2 180 47.2
AL5G13600 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 1.7e-22 109.8 141 48.2
A09p24740 Brassica napus HOM05D003025 ORTHO05D003305 1.5e-21 106.7 167 45.5
BolC7t43953H Brassica oleracea HOM05D003025 ORTHO05D003305 1.5e-21 106.7 179 49.2
AT2G03810 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 2.5e-21 105.9 136 48.5
BcaC04g21446 Brassica carinata HOM05D003025 ORTHO05D003305 2.5e-21 105.9 172 44.8
C09p31660 Brassica napus HOM05D003025 ORTHO05D003305 2.5e-21 105.9 157 47.8
BolC9t56021H Brassica oleracea HOM05D003025 ORTHO05D003305 2.5e-21 105.9 157 47.8
BcaB07g30644 Brassica carinata HOM05D003025 ORTHO05D003305 5.6e-21 104.8 155 48.4
Carub.0005s0297 Capsella rubella HOM05D003025 ORTHO05D003305 4.7e-20 101.7 123 50.4
BraA09t38060Z Brassica rapa HOM05D003025 ORTHO05D003305 8.1e-20 100.9 134 49.3
A06p42840 Brassica napus HOM05D003025 ORTHO05D003305 2.0e-18 96.3 170 45.9
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.7e-14 83.2 55 70.9
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.2e-10 70.5 45 73.3
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 3.4e-10 68.9 87 46.0
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 9.9e-10 67.4 46 65.2
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 9.9e-10 67.4 46 65.2
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 9.9e-10 67.4 46 65.2
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 9.9e-10 67.4 46 65.2
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 1.7e-09 66.6 46 60.9
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 1.7e-09 66.6 46 65.2
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 2.9e-09 65.9 46 63.0
C04p63350 Brassica napus HOM05D016957 ORTHO05D024051 4.9e-09 65.1 44 70.5
BolC4t27809H Brassica oleracea HOM05D016957 ORTHO05D024051 4.9e-09 65.1 44 70.5
BraA02t07444Z Brassica rapa HOM05D016957 ORTHO05D024051 4.9e-09 65.1 44 70.5
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 6.4e-09 64.7 122 37.7
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 8.4e-09 64.3 46 60.9
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 1.1e-08 63.9 65 47.7
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 7.1e-08 61.2 35 68.6
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.2e-07 60.5 112 38.4
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.6e-07 60.1 112 36.6
Atru.chr11.1558 Acer truncatum HOM05D003025 ORTHO05D003305 3.5e-07 58.9 112 36.6
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 1.0e-06 57.4 112 35.7
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.0e-06 57.4 132 36.4
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 1.0e-06 57.4 135 34.8
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 1.3e-06 57.0 37 62.2
Ciclev10031644m.g Citrus clementina HOM05D003025 ORTHO05D003305 2.3e-06 56.2 121 34.7
RcHm_v2.0_Chr4g0437341 Rosa chinensis HOM05D003025 ORTHO05D003305 2.3e-06 56.2 36 58.3
CSS0010060 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 3.0e-06 55.8 102 34.3
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 3.0e-06 55.8 130 36.2
MD16G1055400 Malus domestica HOM05D003025 ORTHO05D003305 3.9e-06 55.5 36 50.0
A02p33640 Brassica napus HOM05D003025 ORTHO05D003305 5.1e-06 55.1 71 54.9
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 5.1e-06 55.1 71 54.9
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 5.1e-06 55.1 39 59.0
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 5.1e-06 55.1 109 37.6
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 5.1e-06 55.1 46 56.5
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 6.6e-06 54.7 39 61.5
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 6.6e-06 54.7 111 40.5
BcaB03g16265 Brassica carinata HOM05D003025 ORTHO05D003305 8.7e-06 54.3 66 50.0


User provided reference genes

Program Settings