Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 3.5e-129 464.9 227 100.0
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 3.5e-129 464.9 227 100.0
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 2.8e-126 455.3 227 98.2
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 1.4e-125 453.0 227 97.4
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 3.1e-125 451.8 227 96.9
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 5.2e-125 451.1 227 96.0
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 8.9e-125 450.3 227 96.0
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 1.3e-123 446.4 225 96.0
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 1.3e-123 446.4 225 96.0
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 1.3e-123 446.4 225 96.0
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 4.9e-123 444.5 227 95.2
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 4.9e-123 444.5 227 94.7
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 6.4e-123 444.1 227 95.2
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 8.3e-123 443.7 227 95.2
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.4e-122 443.0 227 94.7
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.2e-121 439.9 227 94.7
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 2.0e-121 439.1 227 93.4
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 8.9e-117 423.7 210 99.0
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 2.3e-112 409.1 227 86.3
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 7.3e-111 404.1 225 83.6
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.4e-109 399.8 225 84.0
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 1.5e-108 396.4 221 84.6
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 2.6e-108 395.6 224 82.6
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 1.3e-107 393.3 221 83.7
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 1.3e-107 393.3 222 83.3
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.9e-107 392.1 225 81.8
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 3.7e-107 391.7 220 83.2
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 1.9e-106 389.4 222 81.5
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 1.9e-106 389.4 224 80.8
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 4.1e-106 388.3 219 82.2
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 7.1e-106 387.5 224 79.9
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 9.2e-106 387.1 220 82.3
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.2e-105 386.7 220 80.9
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 4.6e-105 384.8 221 81.9
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 6.0e-105 384.4 221 81.9
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 6.0e-105 384.4 224 79.9
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 6.0e-105 384.4 219 81.7
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 7.8e-105 384.0 220 81.4
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 7.8e-105 384.0 220 81.8
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.3e-104 383.3 220 81.4
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 1.3e-104 383.3 221 81.0
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 1.7e-104 382.9 224 81.2
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 1.7e-104 382.9 223 82.5
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 2.3e-104 382.5 224 80.8
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.3e-104 382.5 220 81.4
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 2.3e-104 382.5 223 80.7
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 3.0e-104 382.1 220 82.3
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 3.0e-104 382.1 224 80.4
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 3.9e-104 381.7 216 81.5
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 3.9e-104 381.7 221 80.5
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 5.1e-104 381.3 220 80.0
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 5.1e-104 381.3 216 82.4
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 6.6e-104 380.9 220 82.7
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 6.6e-104 380.9 216 81.9
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 6.6e-104 380.9 225 80.9
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 8.6e-104 380.6 219 81.3
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 8.6e-104 380.6 220 80.5
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 8.6e-104 380.6 223 79.8
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 8.6e-104 380.6 225 78.7
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 8.6e-104 380.6 224 79.9
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.1e-103 380.2 224 79.0
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.1e-103 380.2 220 80.5
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.1e-103 380.2 219 82.2
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.9e-103 379.4 220 80.5
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 1.9e-103 379.4 216 80.6
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.9e-103 379.4 216 82.9
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 2.5e-103 379.0 220 80.0
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 2.5e-103 379.0 223 78.9
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 4.3e-103 378.3 216 81.0
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 4.3e-103 378.3 224 79.0
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 4.3e-103 378.3 212 83.0
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 4.3e-103 378.3 220 80.0
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 5.6e-103 377.9 225 78.2
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 5.6e-103 377.9 220 80.5
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 7.3e-103 377.5 220 81.8
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 7.3e-103 377.5 220 80.9
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 7.3e-103 377.5 219 80.4
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 9.6e-103 377.1 219 80.8
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 9.6e-103 377.1 220 80.0
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 1.2e-102 376.7 221 79.2
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.2e-102 376.7 224 79.0
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.2e-102 376.7 224 79.5
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.2e-102 376.7 224 79.0
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 1.6e-102 376.3 220 80.0
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.1e-102 375.9 212 82.5
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 2.8e-102 375.6 220 79.5
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 3.6e-102 375.2 226 77.4
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.6e-102 375.2 223 79.8
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 4.7e-102 374.8 220 80.0
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 6.2e-102 374.4 217 80.2
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 6.2e-102 374.4 217 80.2
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 8.1e-102 374.0 214 81.8
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 8.1e-102 374.0 225 77.8
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 2.4e-101 372.5 223 78.9
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 4.0e-101 371.7 225 78.7
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 6.8e-101 370.9 220 78.2
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 6.8e-101 370.9 221 77.8
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 8.9e-101 370.5 215 80.0
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 8.9e-101 370.5 220 80.5
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 1.2e-100 370.2 225 77.8
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 1.5e-100 369.8 221 78.7
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.0e-100 369.4 224 78.1
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 2.6e-100 369.0 221 77.8
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 3.4e-100 368.6 218 79.8
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.4e-100 368.6 224 77.2
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 7.6e-100 367.5 218 78.9
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 2.9e-99 365.5 218 78.9
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.9e-99 364.8 219 78.1
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 6.4e-99 364.4 245 71.8
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 1.4e-98 363.2 250 70.4
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.4e-98 363.2 238 73.5
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 3.2e-98 362.1 223 78.0
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 9.3e-98 360.5 218 77.5
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 7.8e-97 357.5 215 78.1
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.5e-95 353.2 218 78.0
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.5e-95 352.4 274 65.3
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 3.3e-95 352.1 215 76.7
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.2e-92 343.6 217 69.6
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.7e-89 332.4 227 70.9
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 1.3e-88 330.1 219 68.9
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 5.6e-87 324.7 218 67.0
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 4.8e-86 321.6 221 67.0
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 6.4e-83 311.2 222 65.8
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 2.2e-75 286.2 160 87.5
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 2.1e-73 279.6 157 87.3
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.3e-72 276.9 161 78.3
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 2.5e-71 272.7 168 71.4
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.6e-71 270.8 153 80.4
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 2.8e-70 269.2 215 59.5
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.7e-63 244.2 163 71.2
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 4.8e-62 241.9 218 53.7
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 1.1e-61 240.7 131 82.4
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 4.6e-57 225.3 217 53.0
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 7.4e-55 218.0 128 79.7
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 1.7e-54 216.9 213 47.9
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 3.4e-52 209.1 111 87.4
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.3e-48 196.4 147 71.4
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 4.4e-47 192.2 112 75.0
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 9.7e-47 191.0 115 74.8
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 3.7e-46 189.1 108 87.0
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.6e-44 183.0 130 62.3
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 5.9e-36 155.2 90 76.7
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 1.2e-33 147.5 134 56.7
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.5e-31 140.6 216 37.0
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 5.4e-29 132.1 96 72.9
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.8e-27 125.9 74 82.4
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.0e-27 125.6 67 83.6
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 8.0e-25 118.2 61 88.5
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 1.0e-24 117.9 83 65.1
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 6.3e-22 108.6 77 75.3
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.0e-19 101.3 54 79.6
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.5e-18 97.4 57 68.4
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.6e-17 94.0 64 70.3
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 4.0e-16 89.4 60 75.0
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 1.2e-15 87.8 57 78.9
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.2e-15 87.8 56 82.1
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 5.7e-15 85.5 59 74.6
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 2.4e-13 80.1 100 45.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.3e-11 74.3 122 42.6
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 3.9e-11 72.8 39 82.1
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 8.6e-11 71.6 53 71.7
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.5e-10 70.9 50 70.0


User provided reference genes

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