Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 8.7e-77 290.4 168 100.0
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 8.7e-77 290.4 168 100.0
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 2.9e-72 275.4 168 92.3
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 4.9e-72 274.6 173 94.8
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 2.7e-70 268.9 173 90.8
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.4e-66 255.8 172 87.8
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 7.7e-57 224.2 185 76.2
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-56 223.4 178 73.0
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 2.2e-56 222.6 178 75.8
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 3.8e-56 221.9 178 75.8
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 8.5e-56 220.7 178 74.2
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 8.5e-56 220.7 178 74.2
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 8.5e-56 220.7 178 74.2
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 5.5e-55 218.0 184 72.8
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.1e-54 216.1 187 71.1
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 5.1e-53 211.5 189 74.1
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.2e-49 200.3 194 70.1
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 9.7e-44 180.6 194 65.5
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 3.7e-43 178.7 185 66.5
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.3e-35 153.7 169 59.8
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 8.2e-35 151.0 170 64.7
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.0e-32 144.1 168 59.5
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-32 143.3 168 63.1
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 2.2e-32 142.9 168 61.3
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 3.8e-32 142.1 168 62.5
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 5.5e-31 138.3 168 60.7
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 9.4e-31 137.5 170 58.8
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.6e-30 136.7 176 61.9
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 3.0e-29 132.5 124 64.5
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 5.2e-29 131.7 170 57.1
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 8.8e-29 131.0 168 60.7
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 4.4e-28 128.6 119 65.5
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 3.8e-24 115.5 117 62.4
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 5.0e-24 115.2 117 63.2
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 5.0e-24 115.2 118 66.9
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 5.0e-24 115.2 117 63.2
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 7.2e-23 111.3 132 55.3
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 8.0e-22 107.8 126 50.0
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 4.0e-21 105.5 154 45.5
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 5.2e-21 105.1 147 50.3
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 2.0e-20 103.2 138 50.0
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 3.4e-20 102.4 149 52.3
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 4.4e-20 102.1 117 58.1
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 2.2e-19 99.8 124 47.6
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 2.2e-19 99.8 166 42.2
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.8e-19 99.4 119 47.9
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 4.9e-19 98.6 140 45.0
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 6.3e-19 98.2 124 46.8
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 6.3e-19 98.2 132 55.3
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 8.3e-19 97.8 167 46.7
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.8e-18 96.7 154 51.9
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.8e-18 96.7 140 45.7
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 2.4e-18 96.3 171 48.0
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 5.4e-18 95.1 137 50.4
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 9.2e-18 94.4 125 50.4
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 9.2e-18 94.4 145 43.4
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 1.2e-17 94.0 122 48.4
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.2e-17 94.0 141 52.5
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 2.0e-17 93.2 144 41.7
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 2.0e-17 93.2 144 41.7
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.0e-17 93.2 136 42.6
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 2.0e-17 93.2 136 42.6
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 3.5e-17 92.4 87 58.6
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 3.5e-17 92.4 135 49.6
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 4.5e-17 92.0 162 48.8
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 7.7e-17 91.3 143 54.5
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.0e-16 90.9 129 44.2
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.0e-16 90.9 138 47.1
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.0e-16 90.9 132 48.5
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.7e-16 90.1 122 44.3
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.3e-16 89.7 82 57.3
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.3e-16 89.7 135 43.7
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 2.9e-16 89.4 132 41.7
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 2.9e-16 89.4 144 45.1
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 2.9e-16 89.4 144 45.1
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 3.8e-16 89.0 167 41.9
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 5.0e-16 88.6 164 41.5
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 6.6e-16 88.2 149 36.2
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 6.6e-16 88.2 114 47.4
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 8.6e-16 87.8 167 38.9
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 8.6e-16 87.8 132 46.2
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 8.6e-16 87.8 86 59.3
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.1e-15 87.4 156 47.4
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.9e-15 86.7 140 40.0
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.9e-15 86.7 116 46.6
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.9e-15 86.7 147 45.6
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 4.3e-15 85.5 130 43.8
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 5.6e-15 85.1 100 47.0
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 5.6e-15 85.1 167 39.5
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 5.6e-15 85.1 146 37.0
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 7.3e-15 84.7 173 48.0
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 9.5e-15 84.3 164 39.6
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 9.5e-15 84.3 174 39.1
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.8e-14 82.8 74 58.1
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 2.8e-14 82.8 144 48.6
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 2.8e-14 82.8 137 40.9
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 2.8e-14 82.8 134 39.6
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 3.6e-14 82.4 129 51.2
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 3.6e-14 82.4 93 49.5
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 3.6e-14 82.4 123 43.9
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 4.7e-14 82.0 69 58.0
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 4.7e-14 82.0 132 41.7
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 8.0e-14 81.3 74 60.8
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 8.0e-14 81.3 160 37.5
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 8.0e-14 81.3 80 52.5
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.4e-13 80.5 96 53.1
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.8e-13 80.1 135 41.5
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.8e-13 80.1 169 39.1
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.0e-13 79.3 79 50.6
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 3.0e-13 79.3 144 50.7
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 5.2e-13 78.6 123 43.9
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.8e-13 78.2 127 41.7
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 6.8e-13 78.2 134 44.8
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 8.9e-13 77.8 70 57.1
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 8.9e-13 77.8 171 43.9
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 1.2e-12 77.4 80 53.8
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 1.2e-12 77.4 118 52.5
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.2e-12 77.4 73 53.4
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 2.0e-12 76.6 173 39.9
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 2.0e-12 76.6 142 45.1
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 2.0e-12 76.6 84 51.2
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 3.4e-12 75.9 74 54.1
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 3.4e-12 75.9 166 47.6
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 5.7e-12 75.1 137 46.7
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 5.7e-12 75.1 137 46.7
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 7.5e-12 74.7 125 40.0
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 9.8e-12 74.3 122 45.9
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.3e-11 73.9 73 54.8
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.3e-11 73.9 74 55.4
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.3e-11 73.9 140 35.7
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 1.7e-11 73.6 156 45.5
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.7e-11 73.6 140 45.7
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.7e-11 73.6 85 49.4
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 2.2e-11 73.2 125 40.8
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 2.2e-11 73.2 134 35.8
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 2.2e-11 73.2 117 41.9
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 2.2e-11 73.2 97 49.5
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 3.7e-11 72.4 85 45.9
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 3.7e-11 72.4 137 43.8
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 4.9e-11 72.0 137 37.2
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 8.3e-11 71.2 67 58.2
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 8.3e-11 71.2 160 41.9
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.1e-10 70.9 73 53.4
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.4e-10 69.7 116 44.8
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.4e-10 69.7 121 37.2
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 2.4e-10 69.7 85 43.5
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 3.2e-10 69.3 114 51.8
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.1e-10 68.9 73 49.3
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 4.1e-10 68.9 124 46.0
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.2e-09 67.4 124 38.7
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 2.0e-09 66.6 181 39.2
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.7e-09 66.2 123 47.2
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 3.5e-09 65.9 74 50.0
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 4.6e-09 65.5 95 43.2
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 5.9e-09 65.1 75 49.3
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.0e-08 64.3 145 33.1
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.3e-08 63.9 91 45.1
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 2.3e-08 63.2 83 44.6
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 3.0e-08 62.8 93 41.9
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 3.0e-08 62.8 80 47.5
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 5.0e-08 62.0 101 47.5
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 8.6e-08 61.2 122 41.0
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 1.1e-07 60.8 124 43.5
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.5e-07 60.5 134 41.8
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.9e-07 60.1 104 41.3
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.9e-07 60.1 126 36.5
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.5e-07 59.7 104 43.3
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 4.3e-07 58.9 143 42.7
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 5.6e-07 58.5 113 40.7
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 1.2e-06 57.4 71 46.5
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.8e-06 56.2 83 44.6
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 3.6e-06 55.8 94 41.5


User provided reference genes

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