Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 1.9e-158 562.4 265 100.0
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 1.9e-158 562.4 265 100.0
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-157 559.7 265 99.6
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 2.1e-117 426.0 263 80.2
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 1.4e-116 423.3 231 89.2
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 4.8e-114 414.8 261 72.8
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 2.4e-113 412.5 261 72.4
BraA02t08035Z Brassica rapa HOM05D008086 ORTHO05D004972 5.9e-112 407.9 273 76.2
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 1.7e-111 406.4 261 72.4
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 2.2e-111 406.0 273 70.7
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 2.2e-111 406.0 263 73.0
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 3.8e-111 405.2 256 74.2
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 1.9e-110 402.9 259 73.4
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 1.9e-110 402.9 248 80.6
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 4.2e-110 401.7 268 70.9
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 4.7e-109 398.3 266 70.3
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 1.8e-108 396.4 253 72.3
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 5.7e-99 364.8 273 67.8
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 2.8e-98 362.5 250 72.8
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 7.7e-96 354.4 273 66.7
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 1.0e-95 354.0 228 78.9
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 1.7e-95 353.2 224 73.7
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 7.2e-94 347.8 237 71.7
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 2.3e-92 342.8 218 80.3
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 9.2e-89 330.9 235 71.1
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 1.3e-87 327.0 234 70.9
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 2.9e-87 325.9 230 67.8
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 1.4e-84 317.0 263 61.2
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 3.1e-84 315.8 267 58.8
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 2.0e-83 313.2 267 58.1
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 5.4e-81 305.1 266 56.4
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 9.2e-81 304.3 200 79.0
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 2.7e-80 302.8 258 57.4
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 2.3e-79 299.7 234 65.0
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 1.5e-78 297.0 248 58.9
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.5e-78 297.0 270 54.8
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 7.3e-78 294.7 261 58.2
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 3.6e-77 292.4 228 64.5
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 1.1e-76 290.8 248 57.3
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 8.9e-76 287.7 263 56.7
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 1.5e-75 287.0 263 57.0
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 2.0e-75 286.6 260 56.5
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 2.0e-75 286.6 260 56.5
BcaC03g16910 Brassica carinata HOM05D008086 ORTHO05D004972 7.5e-75 284.6 240 62.1
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 8.3e-74 281.2 259 56.0
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 1.9e-73 280.0 262 54.6
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 7.0e-73 278.1 277 53.1
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 7.0e-73 278.1 209 63.2
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 2.7e-72 276.2 260 55.4
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 3.5e-72 275.8 257 56.0
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.0e-71 274.2 269 52.8
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 2.3e-71 273.1 252 54.0
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 3.3e-70 269.2 249 53.4
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.2e-69 267.3 250 54.4
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 1.7e-66 256.9 273 49.8
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 3.0e-63 246.1 241 51.0
A02p30540 Brassica napus HOM05D008086 ORTHO05D004972 1.7e-58 230.3 146 78.1
BraA02t08072Z Brassica rapa HOM05D008086 ORTHO05D004972 5.4e-57 225.3 145 76.6
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.7e-56 223.0 249 50.2
A02p30190 Brassica napus HOM05D008086 ORTHO05D004972 7.8e-56 221.5 270 50.7
C03p62430 Brassica napus HOM05D008086 ORTHO05D004972 6.4e-50 201.8 178 59.6
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 3.2e-49 199.5 149 62.4
BolC3t18501H Brassica oleracea HOM05D008086 ORTHO05D004972 9.0e-44 181.4 152 61.2
BolC2t10844H Brassica oleracea HOM05D008086 ORTHO05D041227 9.9e-43 177.9 152 59.9
C07p32950 Brassica napus HOM05D008086 ORTHO05D004972 2.8e-37 159.8 128 65.6
C02p48120 Brassica napus HOM05D008086 ORTHO05D041227 2.7e-32 143.3 75 84.0
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.6e-29 134.0 266 33.1
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.1e-28 131.3 257 33.1
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.8e-28 130.6 267 31.1
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 4.5e-27 125.9 233 32.6
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 2.2e-26 123.6 256 30.1
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 2.9e-26 123.2 245 31.8
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 8.4e-26 121.7 276 30.1
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 8.4e-26 121.7 212 33.5
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 1.4e-25 120.9 275 30.9
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 1.9e-25 120.6 264 33.0
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 1.9e-25 120.6 275 30.9
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 1.9e-25 120.6 275 30.9
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 9.3e-25 118.2 113 52.2
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 7.9e-24 115.2 220 34.1
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 7.9e-24 115.2 220 34.1
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-23 114.4 266 28.9
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 1.3e-23 114.4 266 33.1
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 1.8e-23 114.0 209 31.6
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 3.0e-23 113.2 254 30.3
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 3.9e-23 112.8 214 33.6
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 6.7e-23 112.1 267 30.0
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 6.7e-23 112.1 245 30.2
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 2.5e-22 110.2 231 32.9
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 3.3e-22 109.8 261 32.2
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 3.3e-22 109.8 274 28.5
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 4.3e-22 109.4 226 31.9
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 5.7e-22 109.0 281 28.5
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 9.7e-22 108.2 248 27.4
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-21 107.8 256 32.0
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 2.2e-21 107.1 225 32.4
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 2.2e-21 107.1 266 29.7
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.8e-21 106.7 253 29.2
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 3.7e-21 106.3 225 32.0
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 6.3e-21 105.5 269 28.3
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.4e-20 104.4 277 28.5
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 2.4e-20 103.6 253 26.1
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 2.4e-20 103.6 253 26.1
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 2.4e-20 103.6 249 30.1
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 5.3e-20 102.4 281 28.5
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 6.9e-20 102.1 237 28.7
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 9.0e-20 101.7 247 29.6
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 9.0e-20 101.7 119 38.7
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 1.2e-19 101.3 247 29.1
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 1.2e-19 101.3 247 29.1
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 1.2e-19 101.3 253 29.6
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 1.5e-19 100.9 248 27.8
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 1.5e-19 100.9 136 36.0
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 1.5e-19 100.9 248 27.8
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 2.0e-19 100.5 253 29.2
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 3.4e-19 99.8 241 29.9
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 4.5e-19 99.4 294 28.9
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 4.5e-19 99.4 279 27.2
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 4.5e-19 99.4 242 29.8
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 7.7e-19 98.6 245 24.5
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 7.7e-19 98.6 245 24.5
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 1.7e-18 97.4 245 24.1
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 2.2e-18 97.1 280 26.8
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 6.5e-18 95.5 247 28.7
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 6.5e-18 95.5 248 32.3
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 8.5e-18 95.1 240 30.0
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-17 94.7 252 28.2
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 1.4e-17 94.4 196 34.7
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 1.4e-17 94.4 248 24.6
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.9e-17 94.0 120 37.5
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 1.9e-17 94.0 245 24.5
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 1.9e-17 94.0 241 29.5
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 4.2e-17 92.8 214 29.9
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 5.5e-17 92.4 279 28.3
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 2.7e-16 90.1 249 28.5
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 2.7e-16 90.1 249 28.5
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 3.6e-16 89.7 213 27.7
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 7.9e-16 88.6 241 28.2
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 1.0e-15 88.2 233 29.6
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 1.8e-15 87.4 247 28.7
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 2.3e-15 87.0 238 27.7
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 8.8e-15 85.1 268 29.1
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.1e-14 84.7 123 37.4
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.5e-14 84.3 118 35.6
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 4.3e-14 82.8 114 39.5
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 7.4e-14 82.0 217 28.1
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 1.3e-13 81.3 234 28.2
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 1.3e-13 81.3 239 27.6
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 2.2e-13 80.5 245 28.2
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 4.8e-13 79.3 225 30.7
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 6.3e-13 79.0 127 33.1
COL.COLO4_37190 Corchorus olitorius HOM05D007337 ORTHO05D010560 9.1e-12 75.1 218 27.1
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 3.8e-10 69.7 139 31.7
BcaC09g50367 Brassica carinata HOM05D007337 ORTHO05D004972 6.5e-10 68.9 173 26.0
PGSC0003DMG400004806 Solanum tuberosum HOM05D008086 ORTHO05D010560 6.5e-10 68.9 96 34.4
C07p47990 Brassica napus HOM05D007337 ORTHO05D004972 8.5e-10 68.6 247 26.7
CAN.G1218.23 Capsicum annuum HOM05D008086 ORTHO05D010560 1.1e-09 68.2 96 34.4
Sopen08g027190 Solanum pennellii HOM05D001099 ORTHO05D010560 1.4e-09 67.8 96 33.3
Nitab4.5_0008481g0040 Nicotiana tabacum HOM05D008086 ORTHO05D010560 1.9e-09 67.4 96 35.4
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 2.5e-09 67.0 96 34.4
Peaxi162Scf00002g01721 Petunia axillaris HOM05D008086 ORTHO05D010560 2.5e-09 67.0 96 34.4
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 5.5e-09 65.9 70 40.0
BolC4t21835H Brassica oleracea HOM05D007337 ORTHO05D004972 7.2e-09 65.5 251 25.1
BolC4t21837H Brassica oleracea HOM05D007337 ORTHO05D004972 7.2e-09 65.5 251 25.1
BolC4t21838H Brassica oleracea HOM05D007337 ORTHO05D004972 7.2e-09 65.5 251 25.1
Solyc08g078720.3 Solanum lycopersicum HOM05D008086 ORTHO05D010560 7.2e-09 65.5 96 32.3
Peaxi162Scf00002g00191 Petunia axillaris HOM05D001099 ORTHO05D000958 3.6e-08 63.2 211 24.2
Cc08_g12570 Coffea canephora HOM05D001099 ORTHO05D010560 1.5e-06 57.8 99 34.3
A06p44940 Brassica napus HOM05D009070 ORTHO05D010560 3.3e-06 56.6 98 33.7
BraA06t27365Z Brassica rapa HOM05D009070 ORTHO05D010560 3.3e-06 56.6 98 33.7
C07p31240 Brassica napus HOM05D009070 ORTHO05D010560 4.4e-06 56.2 98 33.7
BolC7t43665H Brassica oleracea HOM05D009070 ORTHO05D010560 4.4e-06 56.2 98 33.7
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 5.7e-06 55.8 100 33.0


User provided reference genes

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