Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17189 Brassica carinata HOM05D003839 ORTHO05D003352 5.7e-86 320.9 160 100.0
BcaB08g35818 Brassica carinata HOM05D003839 ORTHO05D003352 1.2e-59 233.4 147 81.0
BcaC03g17190 Brassica carinata HOM05D003839 ORTHO05D003352 6.6e-58 227.6 125 89.6
BolC6t38134H Brassica oleracea HOM05D003839 ORTHO05D003352 1.1e-55 220.3 153 72.5
BcaB05g23505 Brassica carinata HOM05D003839 ORTHO05D003352 1.5e-54 216.5 148 74.3
BraA01t02749Z Brassica rapa HOM05D003839 ORTHO05D003352 1.7e-53 213.0 149 72.5
C04p41030 Brassica napus HOM05D003839 ORTHO05D003352 2.9e-53 212.2 153 69.9
BolC4t25686H Brassica oleracea HOM05D003839 ORTHO05D003352 2.9e-53 212.2 153 69.9
BraA01t03014Z Brassica rapa HOM05D003839 ORTHO05D003352 2.4e-52 209.1 148 67.6
BraA01t02837Z Brassica rapa HOM05D003839 ORTHO05D003352 3.0e-50 202.2 149 67.8
A05p17610 Brassica napus HOM05D003839 ORTHO05D003352 8.6e-50 200.7 151 64.9
BcaB04g18348 Brassica carinata HOM05D003839 ORTHO05D003352 1.8e-47 193.0 147 64.6
BraA02t07902Z Brassica rapa HOM05D003839 ORTHO05D003352 4.0e-47 191.8 149 65.8
A02p28670 Brassica napus HOM05D003839 ORTHO05D003352 6.8e-47 191.0 149 65.8
BcaB06g26804 Brassica carinata HOM05D003839 ORTHO05D003352 2.0e-46 189.5 151 61.6
BolC8t48491H Brassica oleracea HOM05D003839 ORTHO05D003352 2.6e-46 189.1 149 64.4
BcaC05g27601 Brassica carinata HOM05D003839 ORTHO05D003352 3.4e-46 188.7 149 64.4
C05p35870 Brassica napus HOM05D003839 ORTHO05D003352 3.4e-46 188.7 149 64.4
A05p21290 Brassica napus HOM05D003839 ORTHO05D003352 9.9e-46 187.2 149 63.8
BolC5t32306H Brassica oleracea HOM05D003839 ORTHO05D003352 9.9e-46 187.2 149 63.8
BraA05t21037Z Brassica rapa HOM05D003839 ORTHO05D003352 9.9e-46 187.2 149 63.8
BcaC06g33695 Brassica carinata HOM05D003839 ORTHO05D003352 1.3e-45 186.8 149 63.8
BcaB06g26196 Brassica carinata HOM05D003839 ORTHO05D003352 2.9e-45 185.7 147 62.6
C03p63060 Brassica napus HOM05D003839 ORTHO05D003352 2.9e-45 185.7 149 64.4
C02p27640 Brassica napus HOM05D003839 ORTHO05D003352 3.8e-45 185.3 149 63.8
A05p21770 Brassica napus HOM05D003839 ORTHO05D003352 4.9e-45 184.9 141 66.0
BraA05t21098Z Brassica rapa HOM05D003839 ORTHO05D003352 4.9e-45 184.9 141 66.0
BcaB01g01663 Brassica carinata HOM05D003839 ORTHO05D003352 6.4e-45 184.5 147 61.2
BcaC05g29109 Brassica carinata HOM05D003839 ORTHO05D003352 1.1e-44 183.7 148 63.5
C05p53370 Brassica napus HOM05D003839 ORTHO05D003352 1.1e-44 183.7 148 63.5
C05p53340 Brassica napus HOM05D003839 ORTHO05D003352 2.4e-44 182.6 148 63.5
BolC5t34007H Brassica oleracea HOM05D003839 ORTHO05D003352 4.6e-43 178.3 142 63.4
BcaB02g06777 Brassica carinata HOM05D003839 ORTHO05D003352 1.0e-42 177.2 147 60.5
BcaC03g15184 Brassica carinata HOM05D003839 ORTHO05D003352 1.6e-40 169.9 149 60.4
A04p07260 Brassica napus HOM05D003839 ORTHO05D003352 1.6e-40 169.9 117 70.9
BraA04t16421Z Brassica rapa HOM05D003839 ORTHO05D003352 1.6e-40 169.9 117 70.9
BcaB07g32710 Brassica carinata HOM05D003839 ORTHO05D003352 1.4e-39 166.8 148 58.1
BcaB01g01517 Brassica carinata HOM05D003839 ORTHO05D003352 3.4e-38 162.2 149 57.7
A09p32650 Brassica napus HOM05D003839 ORTHO05D003352 5.8e-38 161.4 117 69.2
BcaB05g23330 Brassica carinata HOM05D003839 ORTHO05D003352 1.3e-37 160.2 120 65.8
BcaC09g50233 Brassica carinata HOM05D003839 ORTHO05D003352 1.1e-36 157.1 149 57.7
BolC2t11209H Brassica oleracea HOM05D003839 ORTHO05D003352 2.4e-36 156.0 83 90.4
BcaB03g16839 Brassica carinata HOM05D003839 ORTHO05D003352 2.7e-35 152.5 147 51.7
BcaB04g17572 Brassica carinata HOM05D003839 ORTHO05D003352 2.7e-35 152.5 143 54.5
BcaB01g00721 Brassica carinata HOM05D003839 ORTHO05D003352 3.5e-35 152.1 147 51.7
BcaB04g17113 Brassica carinata HOM05D003839 ORTHO05D003352 4.6e-35 151.8 147 52.4
BcaB07g32949 Brassica carinata HOM05D003839 ORTHO05D003352 4.6e-35 151.8 147 51.7
C02p27160 Brassica napus HOM05D003839 ORTHO05D003352 6.0e-35 151.4 127 59.1
BolC2t09048H Brassica oleracea HOM05D003839 ORTHO05D003352 7.8e-35 151.0 149 55.0
BcaB06g27258 Brassica carinata HOM05D003839 ORTHO05D003352 1.3e-34 150.2 147 51.7
BcaC04g22104 Brassica carinata HOM05D003839 ORTHO05D003352 5.1e-34 148.3 149 55.7
BolC9t57767H Brassica oleracea HOM05D003839 ORTHO05D003352 6.6e-34 147.9 149 55.0
A03p67260 Brassica napus HOM05D003839 ORTHO05D003352 1.5e-33 146.7 99 73.7
BcaB07g32609 Brassica carinata HOM05D003839 ORTHO05D003352 2.5e-33 146.0 142 51.4
BcaC06g36011 Brassica carinata HOM05D003839 ORTHO05D003352 2.5e-33 146.0 149 54.4
C09p23320 Brassica napus HOM05D003839 ORTHO05D003352 3.3e-33 145.6 101 67.3
C03p63070 Brassica napus HOM05D003839 ORTHO05D003352 4.8e-32 141.7 101 65.3
BcaB01g02875 Brassica carinata HOM05D003839 ORTHO05D003352 1.1e-31 140.6 147 47.6
BcaB02g07569 Brassica carinata HOM05D003839 ORTHO05D003352 1.9e-28 129.8 100 62.0
A05p20350 Brassica napus HOM05D003839 ORTHO05D003352 4.2e-28 128.6 100 61.0
BraA08t34532Z Brassica rapa HOM05D003839 ORTHO05D003352 4.2e-28 128.6 141 46.8
BcaB01g00514 Brassica carinata HOM05D003839 ORTHO05D003352 5.4e-28 128.3 100 59.0
BcaC03g15389 Brassica carinata HOM05D003839 ORTHO05D003352 7.1e-28 127.9 147 46.3
BolC7t43565H Brassica oleracea HOM05D003839 ORTHO05D003352 7.1e-28 127.9 147 46.3
BcaC03g16634 Brassica carinata HOM05D003839 ORTHO05D003352 1.2e-27 127.1 147 46.3
C02p24590 Brassica napus HOM05D003839 ORTHO05D003352 7.9e-27 124.4 143 44.8
A05p03580 Brassica napus HOM05D003839 ORTHO05D003352 1.9e-25 119.8 129 49.6
BraA02t07568Z Brassica rapa HOM05D008292 ORTHO05D003352 1.9e-25 119.8 127 49.6
BcaC02g10611 Brassica carinata HOM05D003839 ORTHO05D003352 1.6e-24 116.7 130 50.8
BcaB03g16489 Brassica carinata HOM05D003839 ORTHO05D003352 1.5e-22 110.2 102 52.0
C02p51180 Brassica napus HOM05D003839 ORTHO05D003352 4.5e-22 108.6 55 98.2
BcaC01g02162 Brassica carinata HOM05D003839 ORTHO05D003352 5.8e-22 108.2 139 40.3
C04p25750 Brassica napus HOM05D003839 ORTHO05D003352 1.3e-21 107.1 103 54.4
BcaB08g35819 Brassica carinata HOM05D003839 ORTHO05D003352 2.2e-21 106.3 65 80.0
BolC4t24234H Brassica oleracea HOM05D003839 ORTHO05D003352 3.8e-21 105.5 103 53.4
BcaB07g31055 Brassica carinata HOM05D003839 ORTHO05D003352 1.4e-20 103.6 83 60.2
C09p49180 Brassica napus HOM05D003839 ORTHO05D003352 1.9e-20 103.2 109 47.7
BcaC07g38083 Brassica carinata HOM05D003839 ORTHO05D003352 2.1e-19 99.8 83 62.7
BcaB06g26117 Brassica carinata HOM05D003839 ORTHO05D003352 7.9e-19 97.8 87 52.9
C03p67990 Brassica napus HOM05D003839 ORTHO05D003352 1.0e-18 97.4 116 42.2
C06p50270 Brassica napus HOM05D003839 ORTHO05D003352 5.1e-18 95.1 115 38.3
BcaB06g27469 Brassica carinata HOM05D003839 ORTHO05D003352 6.7e-18 94.7 71 64.8
C04p33340 Brassica napus HOM05D003839 ORTHO05D003352 6.7e-18 94.7 115 38.3
BcaB07g30584 Brassica carinata HOM05D003839 ORTHO05D003352 4.3e-17 92.0 103 48.5
BcaC09g48414 Brassica carinata HOM05D003839 ORTHO05D003352 7.4e-17 91.3 96 49.0
Thhalv10005434m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 1.6e-16 90.1 112 39.3
Thhalv10005441m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 1.6e-16 90.1 130 37.7
BcaB05g24307 Brassica carinata HOM05D003839 ORTHO05D003352 8.2e-16 87.8 112 37.5
Thhalv10003316m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 8.2e-16 87.8 93 45.2
C08p08050 Brassica napus HOM05D003839 ORTHO05D003352 1.8e-15 86.7 100 48.0
BraA07t28801Z Brassica rapa HOM05D003839 ORTHO05D003352 2.4e-15 86.3 123 36.6
BcaB02g06630 Brassica carinata HOM05D003839 ORTHO05D003352 3.1e-15 85.9 112 37.5
A09p20270 Brassica napus HOM05D003839 ORTHO05D003352 3.1e-15 85.9 115 34.8
C02p44490 Brassica napus HOM05D003839 ORTHO05D003352 5.3e-15 85.1 115 36.5
BcaC07g37358 Brassica carinata HOM05D003839 ORTHO05D003352 9.0e-15 84.3 100 47.0
A09p19700 Brassica napus HOM05D003839 ORTHO05D003352 1.2e-14 84.0 107 37.4
C09p21410 Brassica napus HOM05D003839 ORTHO05D003352 1.2e-14 84.0 115 35.7
BcaB04g17896 Brassica carinata HOM05D003839 ORTHO05D003352 1.5e-14 83.6 126 34.1
Thhalv10003388m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 1.5e-14 83.6 93 41.9
C03p91870 Brassica napus HOM05D003839 ORTHO05D003352 2.0e-14 83.2 94 37.2
BolC3t21507H Brassica oleracea HOM05D003839 ORTHO05D003352 2.0e-14 83.2 94 37.2
BolC1t03162H Brassica oleracea HOM05D003839 ORTHO05D003352 3.4e-14 82.4 90 47.8
Thhalv10002164m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 1.0e-13 80.9 123 38.2
BolC3t19025H Brassica oleracea HOM05D003839 ORTHO05D003352 1.3e-13 80.5 100 41.0
A03p67960 Brassica napus HOM05D003839 ORTHO05D003352 2.2e-13 79.7 103 37.9
BolC5t34000H Brassica oleracea HOM05D003839 ORTHO05D003352 2.9e-13 79.3 76 51.3
BraA02t07279Z Brassica rapa HOM05D003839 ORTHO05D003352 2.9e-13 79.3 91 40.7
BcaB07g31374 Brassica carinata HOM05D003839 ORTHO05D003352 3.8e-13 79.0 98 40.8
BcaC01g01423 Brassica carinata HOM05D003839 ORTHO05D003352 3.8e-13 79.0 91 37.4
A01p36380 Brassica napus HOM05D003839 ORTHO05D003352 6.5e-13 78.2 111 35.1
BolC6t35618H Brassica oleracea HOM05D003839 ORTHO05D003352 6.5e-13 78.2 95 37.9
BolC1t05291H Brassica oleracea HOM05D003839 ORTHO05D039488 8.4e-13 77.8 94 43.6
Thhalv10002917m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 8.4e-13 77.8 108 38.0
BcaC04g22280 Brassica carinata HOM05D003839 ORTHO05D003352 1.1e-12 77.4 104 33.7
A03p53810 Brassica napus HOM05D000357 ORTHO05D000242 1.4e-12 77.0 111 36.0
BcaC09g48196 Brassica carinata HOM05D003839 ORTHO05D039488 1.9e-12 76.6 84 47.6
BcaNung02469 Brassica carinata HOM05D003839 ORTHO05D003352 2.5e-12 76.3 111 35.1
A03p53820 Brassica napus HOM05D000943 ORTHO05D002475 2.5e-12 76.3 111 34.2
C07p40670 Brassica napus HOM05D003839 ORTHO05D003352 2.5e-12 76.3 111 35.1
BolC2t10492H Brassica oleracea HOM05D003839 ORTHO05D003352 4.2e-12 75.5 95 36.8
BcaB01g00717 Brassica carinata HOM05D003839 ORTHO05D003352 7.1e-12 74.7 64 54.7
C05p17950 Brassica napus HOM05D003839 ORTHO05D003352 1.2e-11 73.9 90 40.0
C08p34220 Brassica napus HOM05D003839 ORTHO05D003352 1.6e-11 73.6 88 42.0
BolC8t51019H Brassica oleracea HOM05D003839 ORTHO05D003352 1.6e-11 73.6 88 42.0
BcaC06g35172 Brassica carinata HOM05D003839 ORTHO05D003352 2.7e-11 72.8 59 66.1
C08p08700 Brassica napus HOM05D000096 ORTHO05D000045 2.7e-11 72.8 95 36.8
BcaC08g44281 Brassica carinata HOM05D003839 ORTHO05D039180 3.5e-11 72.4 100 44.0
BcaC04g21847 Brassica carinata HOM05D009411 ORTHO05D014997 7.9e-11 71.2 92 38.0
C01p50050 Brassica napus HOM05D003839 ORTHO05D003352 7.9e-11 71.2 75 46.7
C09p26700 Brassica napus HOM05D009411 ORTHO05D014997 7.9e-11 71.2 92 38.0
BolC9t55562H Brassica oleracea HOM05D009411 ORTHO05D014997 7.9e-11 71.2 92 38.0
BraA09t40513Z Brassica rapa HOM05D003839 ORTHO05D003352 7.9e-11 71.2 107 34.6
BcaC08g43741 Brassica carinata HOM05D003839 ORTHO05D003352 1.0e-10 70.9 52 55.8
BcaC05g27209 Brassica carinata HOM05D003839 ORTHO05D003352 1.8e-10 70.1 59 62.7
C03p57520 Brassica napus HOM05D014297 ORTHO05D019911 1.8e-10 70.1 136 27.9
C07p34600 Brassica napus HOM05D009411 ORTHO05D014997 1.8e-10 70.1 92 37.0
BolC7t43992H Brassica oleracea HOM05D009411 ORTHO05D014997 1.8e-10 70.1 92 37.0
C05p32830 Brassica napus HOM05D003839 ORTHO05D003352 2.3e-10 69.7 60 53.3
BolC3t20345H Brassica oleracea HOM05D003839 ORTHO05D003352 3.0e-10 69.3 91 39.6
C06p24070 Brassica napus HOM05D018430 ORTHO05D020143 3.9e-10 68.9 86 40.7
C05p33380 Brassica napus HOM05D000313 ORTHO05D000065 8.7e-10 67.8 111 30.6
BolC5t32063H Brassica oleracea HOM05D000313 ORTHO05D000065 8.7e-10 67.8 111 30.6
CARHR101890 Cardamine hirsuta HOM05D008292 ORTHO05D003352 8.7e-10 67.8 93 35.5
BcaC08g44791 Brassica carinata HOM05D003839 ORTHO05D003352 1.5e-09 67.0 88 40.9
C07p29940 Brassica napus HOM05D003839 ORTHO05D003352 1.9e-09 66.6 74 43.2
BcaB05g21582 Brassica carinata HOM05D003839 ORTHO05D003352 4.3e-09 65.5 71 43.7
AT2G35280 Arabidopsis thaliana HOM05D008292 ORTHO05D003352 5.7e-09 65.1 102 30.4
BraA05t20816Z Brassica rapa HOM05D003839 ORTHO05D020172 5.7e-09 65.1 97 39.2
AL8G28420 Arabidopsis lyrata HOM05D003839 ORTHO05D003352 7.4e-09 64.7 124 29.0
BcaC01g02980 Brassica carinata HOM05D003839 ORTHO05D003352 7.4e-09 64.7 78 35.9
C03p49680 Brassica napus HOM05D009411 ORTHO05D014997 7.4e-09 64.7 92 34.8
BolC3t17266H Brassica oleracea HOM05D009411 ORTHO05D014997 7.4e-09 64.7 92 34.8
BolC9t55033H Brassica oleracea HOM05D003839 ORTHO05D003352 1.6e-08 63.5 99 33.3
BcaB04g18557 Brassica carinata HOM05D003839 ORTHO05D003352 2.8e-08 62.8 71 42.3
C05p54280 Brassica napus HOM05D017666 ORTHO05D033272 4.8e-08 62.0 53 64.2
BcaC08g44872 Brassica carinata HOM05D003839 ORTHO05D003352 6.3e-08 61.6 77 37.7
C03p75260 Brassica napus HOM05D017666 ORTHO05D042826 6.3e-08 61.6 53 64.2
BolC3t19786H Brassica oleracea HOM05D017666 ORTHO05D042826 6.3e-08 61.6 53 64.2
BolC5t34095H Brassica oleracea HOM05D017666 ORTHO05D033272 6.3e-08 61.6 53 64.2
AL4G17890 Arabidopsis lyrata HOM05D003839 ORTHO05D003352 1.1e-07 60.8 127 29.1
BraA01t02030Z Brassica rapa HOM05D035072 ORTHO05D003352 1.8e-07 60.1 77 44.2
BraA03t15418Z Brassica rapa HOM05D017666 ORTHO05D033272 4.1e-07 58.9 53 62.3
C09p43860 Brassica napus HOM05D017666 ORTHO05D003352 5.3e-07 58.5 53 62.3
BcaB05g23095 Brassica carinata HOM05D003839 ORTHO05D003352 6.9e-07 58.2 57 50.9
BcaNung06308 Brassica carinata HOM05D008292 ORTHO05D003352 6.9e-07 58.2 145 25.5
BcaC01g04545 Brassica carinata HOM05D000313 ORTHO05D000065 9.0e-07 57.8 62 41.9
BcaB05g23784 Brassica carinata HOM05D003839 ORTHO05D003352 1.2e-06 57.4 48 56.2
BcaC05g25843 Brassica carinata HOM05D003839 ORTHO05D003352 1.2e-06 57.4 57 45.6
A06p31440 Brassica napus HOM05D008292 ORTHO05D003352 1.5e-06 57.0 122 24.6
A09p40840 Brassica napus HOM05D008292 ORTHO05D003352 1.5e-06 57.0 122 24.6
BcaB05g23090 Brassica carinata HOM05D003839 ORTHO05D032372 2.6e-06 56.2 52 51.9
BraSC35t46017Z Brassica rapa HOM05D017666 ORTHO05D003352 2.6e-06 56.2 52 61.5
CSS0045033 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 2.6e-06 56.2 129 27.1
BolC4t27974H Brassica oleracea HOM05D003839 ORTHO05D003352 4.5e-06 55.5 91 37.4
CARHR108020 Cardamine hirsuta HOM05D008883 ORTHO05D011075 4.5e-06 55.5 96 29.2
A05p19130 Brassica napus HOM05D021406 ORTHO05D020172 7.7e-06 54.7 54 48.1
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 7.7e-06 54.7 54 42.6
BcaC04g22402 Brassica carinata HOM05D040257 ORTHO05D032373 1.0e-05 54.3 73 35.6
A08p04800 Brassica napus HOM05D021406 ORTHO05D020172 1.0e-05 54.3 49 53.1
BolC5t34293H Brassica oleracea HOM05D021406 ORTHO05D020172 1.0e-05 54.3 46 54.3
BolC6t35914H Brassica oleracea HOM05D003839 ORTHO05D003352 1.0e-05 54.3 92 38.0


User provided reference genes

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