Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17098 Brassica carinata HOM05D001507 ORTHO05D002108 2.0e-95 352.4 181 100.0
BraA09t39840Z Brassica rapa HOM05D001507 ORTHO05D002108 1.5e-79 299.7 197 81.2
A03p24900 Brassica napus HOM05D001507 ORTHO05D002108 2.1e-76 289.3 195 79.5
A07p06890 Brassica napus HOM05D001507 ORTHO05D002108 7.9e-76 287.3 195 80.0
BcaC03g17297 Brassica carinata HOM05D001507 ORTHO05D002108 2.3e-75 285.8 195 81.5
BraA08t34332Z Brassica rapa HOM05D001507 ORTHO05D002108 2.9e-70 268.9 192 78.1
A08p23800 Brassica napus HOM05D001507 ORTHO05D002108 1.4e-67 260.0 192 77.1
C03p77630 Brassica napus HOM05D001507 ORTHO05D002108 2.0e-66 256.1 198 73.7
BcaC01g00284 Brassica carinata HOM05D001507 ORTHO05D002108 2.6e-66 255.8 198 73.7
BolC3t20020H Brassica oleracea HOM05D001507 ORTHO05D002108 8.2e-65 250.8 201 72.6
C02p52420 Brassica napus HOM05D001507 ORTHO05D002108 3.6e-60 235.3 163 79.8
BcaNung03302 Brassica carinata HOM05D001507 ORTHO05D002108 4.8e-57 224.9 192 70.3
AT4G39140 Arabidopsis thaliana HOM05D001507 ORTHO05D002108 1.3e-49 200.3 202 62.9
AL7G11080 Arabidopsis lyrata HOM05D001507 ORTHO05D002108 2.8e-49 199.1 202 62.4
CARHR247610 Cardamine hirsuta HOM05D001507 ORTHO05D002108 1.8e-48 196.4 202 61.9
Sp7g36680 Schrenkiella parvula HOM05D001507 ORTHO05D002108 3.5e-47 192.2 201 61.2
Thhalv10025282m.g Eutrema salsugineum HOM05D001507 ORTHO05D002108 4.5e-47 191.8 202 60.9
BcaNung01277 Brassica carinata HOM05D001507 ORTHO05D002108 6.8e-43 177.9 196 58.7
A01p00260 Brassica napus HOM05D001507 ORTHO05D002108 2.0e-42 176.4 196 58.2
A06p48680 Brassica napus HOM05D001507 ORTHO05D002108 1.4e-40 170.2 203 54.7
C01p00370 Brassica napus HOM05D001507 ORTHO05D002108 2.7e-39 166.0 200 55.0
BolC1t00043H Brassica oleracea HOM05D001507 ORTHO05D002108 2.7e-39 166.0 200 55.0
Carub.0007s0102 Capsella rubella HOM05D001507 ORTHO05D002108 2.7e-39 166.0 202 55.9
BraA01t00033Z Brassica rapa HOM05D001507 ORTHO05D002108 4.5e-39 165.2 207 54.6
BcaB03g12245 Brassica carinata HOM05D001507 ORTHO05D002108 5.9e-39 164.9 194 56.2
Aa31LG6G16120 Aethionema arabicum HOM05D001507 ORTHO05D002108 1.5e-37 160.2 202 52.5
BraA06t27735Z Brassica rapa HOM05D001507 ORTHO05D002108 1.2e-36 157.1 179 58.1
BolC7t46746H Brassica oleracea HOM05D001507 ORTHO05D002108 1.4e-35 153.7 209 50.7
THA.LOC104807750 Tarenaya hassleriana HOM05D001507 ORTHO05D002108 3.7e-33 145.6 198 51.0
THA.LOC104804124 Tarenaya hassleriana HOM05D001507 ORTHO05D002108 1.5e-29 133.7 194 50.0
AT2G21500 Arabidopsis thaliana HOM05D001507 ORTHO05D002108 6.2e-28 128.3 197 48.7
BcaC07g41149 Brassica carinata HOM05D001507 ORTHO05D002108 1.2e-26 124.0 196 48.5
AL4G10680 Arabidopsis lyrata HOM05D001507 ORTHO05D002108 1.5e-26 123.6 200 48.0
Sp4g00660 Schrenkiella parvula HOM05D001507 ORTHO05D002108 5.8e-26 121.7 196 46.9
Aa31LG7G15030 Aethionema arabicum HOM05D001507 ORTHO05D002108 1.3e-25 120.6 197 47.7
CARHR112420 Cardamine hirsuta HOM05D001507 ORTHO05D002108 2.9e-25 119.4 197 47.7
Carub.0004s0054 Capsella rubella HOM05D001507 ORTHO05D002108 6.4e-25 118.2 197 46.2
Thhalv10000174m.g Eutrema salsugineum HOM05D001507 ORTHO05D002108 1.6e-23 113.6 196 46.9
Atru.chr5.3080 Acer truncatum HOM05D001507 ORTHO05D002108 3.6e-20 102.4 207 41.1
BcaNung02355 Brassica carinata HOM05D001507 ORTHO05D002108 3.6e-20 102.4 181 47.0
C07p63350 Brassica napus HOM05D001507 ORTHO05D002108 3.6e-20 102.4 181 47.0
Duzib052G0846 Durio zibethinus HOM05D001507 ORTHO05D002108 1.1e-19 100.9 206 41.7
C08p41480 Brassica napus HOM05D001507 ORTHO05D002108 1.8e-19 100.1 202 41.6
BolC8t51709H Brassica oleracea HOM05D001507 ORTHO05D002108 1.8e-19 100.1 202 41.6
Thecc.02G080600 Theobroma cacao HOM05D001507 ORTHO05D002108 5.2e-19 98.6 206 40.8
COL.COLO4_25988 Corchorus olitorius HOM05D001507 ORTHO05D002108 8.9e-19 97.8 206 41.7
A09p58200 Brassica napus HOM05D001507 ORTHO05D002108 1.5e-18 97.1 201 38.8
BraA09t41208Z Brassica rapa HOM05D001507 ORTHO05D002108 1.5e-18 97.1 201 38.8
Gohir.A13G032500 Gossypium hirsutum HOM05D001507 ORTHO05D002108 4.4e-18 95.5 206 39.3
Gohir.D13G030700 Gossypium hirsutum HOM05D001507 ORTHO05D002108 4.4e-18 95.5 206 39.3
Gorai.013G034900 Gossypium raimondii HOM05D001507 ORTHO05D002108 4.4e-18 95.5 206 39.3
Potri.004G158400 Populus trichocarpa HOM05D001507 ORTHO05D002108 9.9e-18 94.4 206 39.8
Ciclev10028499m.g Citrus clementina HOM05D001507 ORTHO05D002108 6.4e-17 91.7 207 39.6
BcaB07g33129 Brassica carinata HOM05D001507 ORTHO05D002108 1.1e-16 90.9 94 54.3
Duzib248G0497 Durio zibethinus HOM05D001507 ORTHO05D002108 5.4e-16 88.6 209 37.8
Cpa.g.sc106.6 Carica papaya HOM05D001507 ORTHO05D002108 7.1e-16 88.2 209 38.8
Prupe.8G091100 Prunus persica HOM05D001507 ORTHO05D002108 7.1e-16 88.2 207 38.6
Potri.009G120000 Populus trichocarpa HOM05D001507 ORTHO05D002108 9.2e-16 87.8 211 39.8
ClCG11G004160 Citrullus lanatus HOM05D001507 ORTHO05D002108 2.1e-15 86.7 209 38.3
MELO3C023321.2 Cucumis melo HOM05D001507 ORTHO05D002108 2.7e-15 86.3 209 38.3
Sabra04G0105700 Salix brachista HOM05D001507 ORTHO05D002108 2.7e-15 86.3 206 38.3
CsaV3_2G015010 Cucumis sativus L. HOM05D001507 ORTHO05D002108 3.5e-15 85.9 209 38.3
CANSAT11G1577 Cannabis sativa HOM05D001507 ORTHO05D002108 4.6e-15 85.5 206 38.8
FAN15G3647 Fragaria x ananassa HOM05D001507 ORTHO05D002108 7.8e-15 84.7 208 38.9
Manes.11G091600 Manihot esculenta HOM05D001507 ORTHO05D002108 1.0e-14 84.3 212 39.2
RcHm_v2.0_Chr6g0265921 Rosa chinensis HOM05D001507 ORTHO05D002108 2.3e-14 83.2 207 38.2
Sed0002025 Sechium edule HOM05D001507 ORTHO05D002108 2.3e-14 83.2 209 37.3
TWI31G0979 Tripterygium wilfordii HOM05D001507 ORTHO05D002108 2.3e-14 83.2 205 38.0
Duzib132G1074 Durio zibethinus HOM05D001507 ORTHO05D002108 3.9e-14 82.4 206 37.9
Manes.04G087266 Manihot esculenta HOM05D001507 ORTHO05D002108 5.1e-14 82.0 204 39.7
QL11p044804 Quercus lobata HOM05D001507 ORTHO05D002108 6.6e-14 81.6 207 39.1
FAN27G1087 Fragaria x ananassa HOM05D001507 ORTHO05D002108 8.6e-14 81.3 208 38.5
Peaxi162Scf00016g00428 Petunia axillaris HOM05D001507 ORTHO05D002108 1.5e-13 80.5 204 36.3
QL11p045220 Quercus lobata HOM05D001507 ORTHO05D002108 1.5e-13 80.5 207 38.6
Cfa005056 Carpinus fangiana HOM05D001507 ORTHO05D002108 1.9e-13 80.1 207 39.1
CiPaw.05G069700 Carya illinoinensis HOM05D001507 ORTHO05D002108 3.3e-13 79.3 207 38.6
FvH4_2g09590 Fragaria vesca HOM05D001507 ORTHO05D002108 3.3e-13 79.3 208 37.5
FAN24G3524 Fragaria x ananassa HOM05D001507 ORTHO05D002108 3.3e-13 79.3 208 37.5
Nitab4.5_0005796g0040 Nicotiana tabacum HOM05D001507 ORTHO05D002108 1.2e-12 77.4 207 34.3
MD05G1061300 Malus domestica HOM05D001507 ORTHO05D002108 1.6e-12 77.0 207 35.7
Nitab4.5_0003234g0130 Nicotiana tabacum HOM05D001507 ORTHO05D002108 2.1e-12 76.6 207 35.3
PGSC0003DMG400025731 Solanum tuberosum HOM05D001507 ORTHO05D002108 2.1e-12 76.6 202 37.6
Sed0017187 Sechium edule HOM05D001507 ORTHO05D002108 2.8e-12 76.3 209 36.4
TWI79G0980 Tripterygium wilfordii HOM05D001507 ORTHO05D002108 4.7e-12 75.5 192 39.1
Lj5A193T105 Lonicera japonica HOM05D001507 ORTHO05D002108 8.1e-12 74.7 209 34.4
Solyc10g054030.2 Solanum lycopersicum HOM05D001507 ORTHO05D002108 8.1e-12 74.7 201 37.8
FAN20G0016 Fragaria x ananassa HOM05D001507 ORTHO05D002108 1.1e-11 74.3 208 36.5
Nitab4.5_0005128g0060 Nicotiana tabacum HOM05D001507 ORTHO05D002108 1.1e-11 74.3 201 36.8
PGR042G3147 Punica granatum HOM05D001507 ORTHO05D002108 1.1e-11 74.3 212 35.4
Sopen10g023880 Solanum pennellii HOM05D001507 ORTHO05D002108 1.4e-11 73.9 202 37.1
Glyma.13G201200 Glycine max HOM05D001507 ORTHO05D002108 3.1e-11 72.8 209 34.9
Peaxi162Scf00003g00728 Petunia axillaris HOM05D001507 ORTHO05D002108 3.1e-11 72.8 205 36.6
CSS0000665 Camellia sinensis var. sinensis HOM05D001507 ORTHO05D002108 5.2e-11 72.0 203 36.5
Eucgr.G01695 Eucalyptus grandis HOM05D001507 ORTHO05D002108 5.2e-11 72.0 223 34.5
Dinv42039 Davidia involucrata HOM05D001507 ORTHO05D002108 6.8e-11 71.6 203 35.5
Nitab4.5_0001317g0180 Nicotiana tabacum HOM05D001507 ORTHO05D002108 1.2e-10 70.9 201 35.3
MD10G1069100 Malus domestica HOM05D001507 ORTHO05D002108 2.0e-10 70.1 207 34.3
VMungo1309G2485 Vigna mungo HOM05D001507 ORTHO05D002108 5.8e-10 68.6 205 33.2
Glyma.12G235700 Glycine max HOM05D001507 ORTHO05D002108 9.9e-10 67.8 208 34.1
Sopen01g052100 Solanum pennellii HOM05D001507 ORTHO05D002108 9.9e-10 67.8 200 33.0
Solyc01g109910.4 Solanum lycopersicum HOM05D001507 ORTHO05D002108 1.3e-09 67.4 200 32.5
Lj9C377G11 Lonicera japonica HOM05D001507 ORTHO05D002108 2.9e-09 66.2 218 34.4
Cc02_g17280 Coffea canephora HOM05D001507 ORTHO05D002108 4.9e-09 65.5 165 35.8
Oeu020732.1 Olea europaea HOM05D001507 ORTHO05D002108 4.9e-09 65.5 205 34.1
DCAR_023013 Daucus carota HOM05D001507 ORTHO05D002108 8.4e-09 64.7 206 33.5
Actinidia00547 Actinidia chinensis HOM05D001507 ORTHO05D002108 1.9e-08 63.5 203 35.0
Migut.B00210 Erythranthe guttata HOM05D001507 ORTHO05D002108 1.9e-08 63.5 205 33.7
CiPaw.06G132600 Carya illinoinensis HOM05D001507 ORTHO05D002108 2.4e-08 63.2 170 37.1
Glyma.04G010000 Glycine max HOM05D001507 ORTHO05D002108 2.4e-08 63.2 206 33.5
Phvul.009G005500 Phaseolus vulgaris HOM05D001507 ORTHO05D002108 3.2e-08 62.8 205 33.2
Lj3g0000522 Lotus japonicus HOM05D001507 ORTHO05D002108 4.2e-08 62.4 205 32.7
HanXRQChr16g0505391 Helianthus annuus HOM05D001507 ORTHO05D002108 5.4e-08 62.0 203 32.5
Oeu055612.1 Olea europaea HOM05D001507 ORTHO05D002108 1.2e-07 60.8 166 35.5
Gohir.A12G042500 Gossypium hirsutum HOM05D001507 ORTHO05D002108 2.1e-07 60.1 170 35.9
Oeu061223.1 Olea europaea HOM05D001507 ORTHO05D002108 2.1e-07 60.1 205 36.6
MSTRG.20062 Avicennia marina HOM05D001507 ORTHO05D002108 2.7e-07 59.7 167 35.3
ECA236G2631 Erigeron canadensis HOM05D001507 ORTHO05D002108 2.7e-07 59.7 207 33.3
Lalb_Chr19g0132301 Lupinus albus HOM05D001507 ORTHO05D002108 2.7e-07 59.7 207 33.3
Sed0016001 Sechium edule HOM05D001507 ORTHO05D002108 2.7e-07 59.7 208 32.7
Lalb_Chr01g0007971 Lupinus albus HOM05D001507 ORTHO05D002108 4.6e-07 58.9 208 31.7
Phvul.011G210200 Phaseolus vulgaris HOM05D001507 ORTHO05D002108 6.0e-07 58.5 205 31.2
Glyma.06G009900 Glycine max HOM05D001507 ORTHO05D002108 1.3e-06 57.4 206 32.0
HanXRQChr10g0307031 Helianthus annuus HOM05D001507 ORTHO05D002108 1.3e-06 57.4 201 32.3
Lsat_1_v5_gn_7_91580 Lactuca sativa HOM05D001507 ORTHO05D002108 1.3e-06 57.4 214 30.4
Haze_02327 Corylus avellana HOM05D001507 ORTHO05D002108 1.7e-06 57.0 97 42.3
PGSC0003DMG400010975 Solanum tuberosum HOM05D001507 ORTHO05D002108 1.7e-06 57.0 100 39.0
PGSC0003DMG400038651 Solanum tuberosum HOM05D001507 ORTHO05D002108 1.7e-06 57.0 186 32.3
GSVIVG01009771001 Vitis vinifera HOM05D001507 ORTHO05D002108 1.7e-06 57.0 204 31.4
VMungo1127G1642 Vigna mungo HOM05D001507 ORTHO05D002108 2.3e-06 56.6 206 31.6
Oeu003737.1 Olea europaea HOM05D001507 ORTHO05D002108 3.0e-06 56.2 168 33.9
Oeu003739.1 Olea europaea HOM05D001507 ORTHO05D002108 3.0e-06 56.2 168 33.9
Sed0021711 Sechium edule HOM05D001507 ORTHO05D002108 3.9e-06 55.8 168 33.3
GSVIVG01023822001 Vitis vinifera HOM05D001507 ORTHO05D002108 3.9e-06 55.8 220 30.5
arahy.Tifrunner.gnm1.ann1.PIWT4D Arachis hypogaea HOM05D001507 ORTHO05D002108 5.1e-06 55.5 202 32.7
arahy.Tifrunner.gnm1.ann1.V5R7Y7 Arachis hypogaea HOM05D001507 ORTHO05D002108 5.1e-06 55.5 202 32.7
ClCG02G004780 Citrullus lanatus HOM05D001507 ORTHO05D002108 5.1e-06 55.5 180 32.8
MELO3C013445.2 Cucumis melo HOM05D001507 ORTHO05D002108 5.1e-06 55.5 179 32.4
Actinidia02230 Actinidia chinensis HOM05D001507 ORTHO05D002108 8.7e-06 54.7 177 34.5


User provided reference genes

Program Settings