Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 5.9e-192 674.1 354 100.0
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.7e-191 672.5 354 99.7
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.3e-188 662.1 354 98.9
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 3.0e-188 661.8 354 98.0
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 3.0e-188 661.8 354 98.0
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 2.2e-183 645.6 354 95.8
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 3.7e-178 628.2 354 93.8
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 1.6e-176 622.9 356 91.9
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 3.5e-176 621.7 354 93.2
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 3.2e-174 615.1 354 94.4
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 1.4e-172 609.8 354 91.0
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 3.7e-170 601.7 354 89.8
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 5.0e-167 591.3 332 93.1
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.1e-165 585.9 364 85.4
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 4.7e-157 558.1 354 83.3
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 3.3e-150 535.4 345 80.9
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 8.9e-148 527.3 337 80.4
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 3.4e-147 525.4 337 80.4
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 8.3e-146 520.8 353 76.5
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 8.3e-146 520.8 353 77.3
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.1e-145 520.4 350 77.4
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 1.9e-145 519.6 337 79.2
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 2.4e-145 519.2 353 76.5
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 4.1e-145 518.5 315 83.5
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 7.1e-145 517.7 354 77.4
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 9.2e-145 517.3 354 75.1
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.2e-144 516.9 342 77.5
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 1.2e-144 516.9 339 78.5
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.1e-144 516.2 338 80.2
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 2.7e-144 515.8 353 76.5
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 2.7e-144 515.8 355 75.5
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 3.5e-144 515.4 339 78.8
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 6.0e-144 514.6 337 78.3
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 3.0e-143 512.3 355 76.9
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 3.9e-143 511.9 337 78.0
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 5.1e-143 511.5 355 75.5
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 5.1e-143 511.5 337 77.4
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 5.1e-143 511.5 337 78.9
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 6.6e-143 511.1 337 78.9
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 8.6e-143 510.8 342 77.2
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 1.1e-142 510.4 355 74.9
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 3.3e-142 508.8 353 76.5
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 7.3e-142 507.7 354 75.4
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 1.2e-141 506.9 336 78.3
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.6e-141 506.5 339 77.9
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 2.8e-141 505.8 337 78.0
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 3.6e-141 505.4 343 77.8
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 4.7e-141 505.0 337 77.4
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 6.2e-141 504.6 347 76.7
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 8.1e-141 504.2 316 82.0
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 8.1e-141 504.2 329 78.4
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.1e-140 503.8 350 76.3
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 1.4e-140 503.4 354 75.4
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.8e-140 503.1 337 78.0
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 1.8e-140 503.1 355 74.6
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 6.8e-140 501.1 337 77.7
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 6.8e-140 501.1 406 68.5
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 8.9e-140 500.7 359 74.9
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 8.9e-140 500.7 337 78.3
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 3.4e-139 498.8 337 77.7
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 4.4e-139 498.4 358 74.9
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 5.8e-139 498.0 371 72.0
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 5.8e-139 498.0 316 80.4
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 7.6e-139 497.7 338 77.8
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 8.4e-138 494.2 337 75.4
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.1e-137 493.8 337 75.1
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 1.9e-137 493.0 346 74.6
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.9e-137 493.0 359 74.1
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 1.9e-137 493.0 316 78.8
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 2.4e-137 492.7 337 74.8
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 4.1e-137 491.9 313 80.2
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 4.1e-137 491.9 358 73.2
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.1e-136 489.6 377 70.8
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 3.0e-135 485.7 311 79.7
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 4.3e-134 481.9 311 78.8
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.6e-133 479.9 311 78.1
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 1.8e-132 476.5 313 76.7
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 6.4e-130 468.0 313 74.8
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 1.4e-129 466.8 317 74.1
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 2.7e-128 462.6 353 70.3
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 4.6e-128 461.8 355 69.9
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 3.9e-127 458.8 305 78.4
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 6.6e-127 458.0 353 71.1
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 8.7e-127 457.6 289 81.7
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 8.7e-127 457.6 321 72.9
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 9.6e-126 454.1 307 76.9
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 1.6e-125 453.4 321 73.5
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 1.8e-124 449.9 314 72.9
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 1.2e-123 447.2 308 76.6
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 3.2e-121 439.1 329 70.8
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 9.3e-121 437.6 351 68.1
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.3e-118 429.1 404 61.9
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 6.2e-117 424.9 318 68.6
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 3.1e-116 422.5 302 72.5
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.9e-114 416.0 294 74.5
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 2.9e-114 416.0 331 64.4
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 1.1e-113 414.1 313 70.0
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.2e-112 410.6 337 66.2
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 1.3e-111 407.1 346 65.0
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 3.0e-111 406.0 353 64.3
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 2.1e-109 399.8 321 65.7
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 5.5e-105 385.2 242 81.8
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 7.4e-102 374.8 255 74.5
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 6.9e-92 341.7 221 79.2
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.5e-91 340.5 216 78.2
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 2.1e-88 330.1 303 58.7
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 7.7e-83 311.6 230 68.7
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 1.1e-81 307.8 312 54.5
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 2.1e-80 303.5 308 54.2
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 4.5e-75 285.8 192 75.5
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.9e-74 283.1 187 77.5
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 2.3e-71 273.5 220 65.5
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 8.2e-69 265.0 236 62.3
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 7.2e-65 251.9 337 47.8
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 2.2e-61 240.4 166 74.7
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.6e-56 223.0 284 46.8
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 1.0e-55 221.5 243 58.0
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 5.7e-54 215.7 151 72.8
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 9.5e-49 198.4 160 65.0
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 8.9e-47 191.8 149 65.1
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.5e-41 173.7 150 58.7
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.5e-38 164.5 280 36.1
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.4e-36 157.1 109 66.1
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 7.0e-36 155.6 122 65.6
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 9.2e-36 155.2 266 41.0
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.1e-31 140.2 261 37.5
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 2.9e-29 133.7 145 55.9
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 9.2e-28 128.6 85 70.6
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 1.3e-26 124.8 101 68.3
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 2.0e-22 110.9 76 72.4
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 4.4e-22 109.8 106 57.5
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 4.6e-19 99.8 60 80.0
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 6.6e-18 95.9 108 52.8
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 1.5e-17 94.7 55 87.3
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.9e-17 94.4 88 62.5
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.3e-17 93.6 56 87.5
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.2e-16 91.7 53 79.2
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 2.4e-15 87.4 113 46.0
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.9e-13 80.5 60 68.3
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 4.6e-11 73.2 43 74.4
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.3e-10 71.6 64 57.8
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 4.0e-07 60.1 68 55.9


User provided reference genes

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