Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 5.3e-193 677.6 351 100.0
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 1.5e-184 649.4 351 96.9
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 6.7e-180 634.0 351 94.6
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 8.8e-180 633.6 352 94.3
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 1.5e-179 632.9 352 94.3
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 2.0e-179 632.5 353 93.8
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 6.1e-173 610.9 351 90.9
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 1.8e-172 609.4 352 90.6
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 3.0e-172 608.6 351 90.9
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 3.9e-172 608.2 352 90.6
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 6.3e-170 600.9 350 90.6
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 8.2e-170 600.5 349 90.8
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 9.1e-169 597.0 353 90.4
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 6.5e-167 590.9 351 88.0
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 4.2e-158 561.6 353 86.1
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 6.1e-157 557.8 353 85.8
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 2.0e-155 552.7 351 83.2
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 9.7e-155 550.4 351 85.2
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 1.7e-146 523.1 326 84.7
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.5e-142 510.0 367 76.3
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 4.9e-130 468.4 362 73.8
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 6.4e-130 468.0 362 73.2
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 8.3e-130 467.6 363 71.6
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.1e-129 467.2 362 72.9
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 4.6e-128 461.8 362 70.7
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 1.6e-125 453.4 318 76.7
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 2.8e-125 452.6 281 83.3
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 6.2e-125 451.4 361 72.6
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 1.8e-124 449.9 364 69.2
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 2.3e-124 449.5 364 69.5
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 2.3e-124 449.5 360 71.9
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 4.0e-124 448.7 289 81.7
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 5.2e-124 448.4 355 69.3
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.2e-123 447.2 363 68.6
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.2e-123 447.2 312 77.9
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 3.4e-123 445.7 358 70.1
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.4e-123 445.3 351 70.1
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 5.8e-123 444.9 359 68.8
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 9.8e-123 444.1 354 70.1
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 9.8e-123 444.1 354 70.1
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 9.8e-123 444.1 354 70.1
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 9.8e-123 444.1 351 69.8
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.7e-122 443.4 353 69.4
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 2.2e-122 443.0 310 75.8
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 2.2e-122 443.0 278 83.5
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 2.9e-122 442.6 362 67.4
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 4.9e-122 441.8 304 77.0
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 6.4e-122 441.4 379 67.8
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 1.1e-121 440.7 368 69.8
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 1.1e-121 440.7 358 68.4
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.4e-121 440.3 319 75.2
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 1.4e-121 440.3 297 78.8
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.4e-121 440.3 312 72.4
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 1.9e-121 439.9 303 76.6
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.9e-121 439.9 360 66.7
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.9e-121 439.9 360 66.7
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.9e-121 439.9 346 70.5
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 2.4e-121 439.5 368 69.3
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 3.2e-121 439.1 279 81.4
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 5.4e-121 438.3 279 81.4
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.2e-120 437.2 280 82.9
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.2e-120 437.2 362 66.9
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 1.2e-120 437.2 323 72.1
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 1.2e-120 437.2 295 76.9
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 2.7e-120 436.0 320 74.4
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 2.7e-120 436.0 292 77.7
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.7e-120 436.0 277 81.9
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 2.7e-120 436.0 319 72.1
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 2.7e-120 436.0 258 85.3
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 2.7e-120 436.0 258 85.3
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 4.6e-120 435.3 278 81.7
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 4.6e-120 435.3 338 70.1
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 6.0e-120 434.9 279 80.3
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 6.0e-120 434.9 312 75.3
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 7.8e-120 434.5 353 68.3
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 1.0e-119 434.1 321 71.0
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 1.3e-119 433.7 277 81.2
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.3e-119 433.7 279 79.6
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.7e-119 433.3 291 79.4
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 3.9e-119 432.2 291 78.7
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 3.9e-119 432.2 273 80.2
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 5.1e-119 431.8 291 79.0
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 5.1e-119 431.8 315 74.0
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 5.1e-119 431.8 356 68.3
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 5.1e-119 431.8 284 79.9
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 8.6e-119 431.0 352 69.3
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.1e-118 430.6 287 78.7
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 1.1e-118 430.6 307 74.6
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.5e-118 430.3 275 80.7
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 4.3e-118 428.7 253 85.8
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 5.6e-118 428.3 279 79.2
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 7.3e-118 427.9 336 70.5
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.6e-117 426.8 279 80.3
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 2.1e-117 426.4 312 72.8
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 2.1e-117 426.4 356 67.7
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 2.8e-117 426.0 356 65.4
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 2.8e-117 426.0 362 66.0
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 2.8e-117 426.0 310 71.6
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 2.8e-117 426.0 356 68.0
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 2.8e-117 426.0 356 67.7
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.8e-117 426.0 326 70.6
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 3.6e-117 425.6 252 87.3
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 8.1e-117 424.5 256 84.0
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 1.8e-116 423.3 262 81.7
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 2.3e-116 422.9 278 78.8
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 3.1e-116 422.5 326 69.9
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 1.2e-115 420.6 307 73.6
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 1.2e-115 420.6 356 67.1
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 1.2e-115 420.6 293 76.5
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 5.8e-115 418.3 349 64.5
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 9.9e-115 417.5 359 65.7
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 1.7e-114 416.8 361 65.9
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 3.7e-114 415.6 288 76.0
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 8.3e-114 414.5 364 66.5
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 8.3e-114 414.5 292 74.0
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 1.1e-113 414.1 256 80.5
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.2e-113 412.5 273 78.0
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 5.4e-113 411.8 250 83.6
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 2.7e-112 409.5 355 62.8
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 5.1e-111 405.2 253 81.4
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.1e-110 404.1 312 68.9
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 6.2e-109 398.3 379 61.2
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.1e-108 397.5 295 73.6
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.8e-108 396.7 273 76.6
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 6.8e-108 394.8 257 77.8
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 6.8e-108 394.8 342 64.9
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 8.9e-108 394.4 269 76.6
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 9.9e-107 391.0 225 88.0
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 2.2e-106 389.8 250 78.4
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 2.9e-106 389.4 272 74.6
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.2e-104 384.0 256 75.8
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 3.5e-104 382.5 243 79.4
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 2.3e-103 379.8 249 78.3
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 5.1e-103 378.6 330 63.3
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 3.4e-99 365.9 267 70.4
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 1.7e-95 353.6 288 62.8
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.8e-92 343.6 248 71.0
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 6.9e-92 341.7 292 66.1
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 2.2e-90 336.7 246 69.1
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 1.1e-89 334.3 198 86.4
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 2.1e-88 330.1 198 84.8
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.9e-86 323.6 212 79.7
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 1.5e-78 297.4 322 57.8
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 1.4e-68 264.2 155 88.4
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 5.3e-68 262.3 166 84.3
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 3.3e-62 243.0 248 56.5
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.8e-47 194.1 108 93.5
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 4.7e-40 169.5 217 51.2
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.8e-37 159.5 102 81.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 8.3e-37 158.7 99 82.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 9.4e-33 145.2 111 67.6
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 8.3e-29 132.1 238 44.5
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 2.2e-21 107.5 64 90.6
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 3.5e-19 100.1 61 83.6


User provided reference genes

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