Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 1.5e-118 429.5 215 100.0
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 1.8e-111 406.0 215 96.3
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 1.0e-90 337.0 197 88.8
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 2.3e-90 335.9 198 86.4
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 9.7e-89 330.5 198 86.9
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 3.1e-87 325.5 198 85.9
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 2.6e-86 322.4 199 84.4
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 2.6e-86 322.4 199 84.4
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.5e-84 316.6 196 83.2
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 3.3e-81 305.4 197 80.2
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 5.7e-81 304.7 198 81.3
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 7.5e-81 304.3 196 80.6
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 7.5e-81 304.3 197 80.2
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 4.8e-80 301.6 197 79.7
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 1.1e-79 300.4 196 80.1
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 7.0e-79 297.7 196 78.6
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 1.4e-71 273.5 191 78.0
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 3.1e-71 272.3 188 79.3
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 7.0e-71 271.2 198 73.2
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 3.5e-70 268.9 189 74.6
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 3.2e-68 262.3 198 74.2
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 2.8e-64 249.2 211 64.9
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 2.1e-59 233.0 180 68.3
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 3.6e-59 232.3 164 76.8
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 3.6e-59 232.3 177 71.2
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 6.1e-59 231.5 177 70.6
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 5.2e-58 228.4 153 77.1
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 2.6e-57 226.1 165 72.1
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 7.5e-57 224.6 161 72.7
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 9.8e-57 224.2 159 74.2
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.3e-56 223.8 187 66.8
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.7e-56 223.4 179 65.4
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 1.7e-56 223.4 162 72.8
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.7e-56 223.4 168 68.5
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 2.2e-56 223.0 165 70.9
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 2.9e-56 222.6 163 70.6
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 3.7e-56 222.2 175 67.4
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 6.4e-56 221.5 185 66.5
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 6.4e-56 221.5 191 63.9
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 6.4e-56 221.5 173 64.7
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 8.3e-56 221.1 150 77.3
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.1e-55 220.7 169 69.2
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.1e-55 220.7 183 61.2
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 1.4e-55 220.3 185 65.9
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 1.4e-55 220.3 147 76.9
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.4e-55 220.3 147 76.2
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.4e-55 220.3 147 76.9
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.4e-55 220.3 147 76.9
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.8e-55 219.9 188 66.0
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.8e-55 219.9 189 61.9
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 1.8e-55 219.9 155 71.6
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 2.4e-55 219.5 175 66.3
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.4e-55 219.5 161 72.0
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 2.4e-55 219.5 145 73.1
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 3.2e-55 219.2 170 67.1
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 3.2e-55 219.2 170 67.1
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 4.1e-55 218.8 167 66.5
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.1e-55 218.8 188 65.4
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 5.4e-55 218.4 169 71.0
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 7.0e-55 218.0 146 76.0
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 7.0e-55 218.0 151 74.2
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 9.2e-55 217.6 158 72.2
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 9.2e-55 217.6 145 77.9
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 9.2e-55 217.6 167 65.9
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 1.6e-54 216.9 176 65.3
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 1.6e-54 216.9 145 73.8
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 2.0e-54 216.5 148 75.7
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 2.7e-54 216.1 151 72.8
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 2.7e-54 216.1 150 74.0
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 2.7e-54 216.1 169 70.4
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 4.6e-54 215.3 163 69.9
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 4.6e-54 215.3 164 67.7
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 4.6e-54 215.3 163 68.7
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 5.9e-54 214.9 161 70.2
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 5.9e-54 214.9 163 66.3
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 7.8e-54 214.5 160 69.4
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 1.0e-53 214.2 164 65.9
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.0e-53 214.2 150 73.3
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.3e-53 213.8 151 72.8
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.3e-53 213.8 146 76.7
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 1.3e-53 213.8 157 70.7
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.7e-53 213.4 155 70.3
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 2.3e-53 213.0 163 69.9
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 3.9e-53 212.2 163 69.3
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 3.9e-53 212.2 149 71.8
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 3.9e-53 212.2 147 72.8
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 3.9e-53 212.2 126 81.7
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 3.9e-53 212.2 126 81.7
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 5.0e-53 211.8 128 81.2
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 6.6e-53 211.5 168 67.9
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 8.6e-53 211.1 184 63.0
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 8.6e-53 211.1 176 64.2
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.1e-52 210.7 165 67.3
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 1.1e-52 210.7 150 74.0
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.5e-52 210.3 154 71.4
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.9e-52 209.9 125 81.6
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 1.9e-52 209.9 169 66.9
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 2.5e-52 209.5 124 87.9
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 2.5e-52 209.5 163 68.7
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.5e-52 209.5 183 60.7
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 3.3e-52 209.1 161 67.7
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 3.3e-52 209.1 152 71.7
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 4.3e-52 208.8 139 76.3
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 5.6e-52 208.4 134 76.9
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 5.6e-52 208.4 152 71.7
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 7.3e-52 208.0 128 79.7
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 7.3e-52 208.0 168 64.9
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 7.3e-52 208.0 155 67.7
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 7.3e-52 208.0 163 67.5
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 7.3e-52 208.0 153 71.9
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 9.5e-52 207.6 135 83.0
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 9.5e-52 207.6 140 75.0
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 9.5e-52 207.6 163 66.9
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 1.2e-51 207.2 152 71.1
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.2e-51 207.2 151 68.9
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 1.6e-51 206.8 152 71.7
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.6e-51 206.8 171 61.4
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 3.6e-51 205.7 171 61.4
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 8.0e-51 204.5 144 70.8
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 1.0e-50 204.1 151 70.2
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 1.4e-50 203.8 165 64.8
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 1.8e-50 203.4 193 58.0
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 1.8e-50 203.4 197 57.9
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 6.8e-50 201.4 149 69.8
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 8.9e-50 201.1 128 75.8
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 9.8e-49 197.6 161 64.6
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 1.7e-48 196.8 138 76.1
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 1.7e-48 196.8 125 76.0
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 2.9e-48 196.1 143 72.0
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 6.4e-48 194.9 179 59.8
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 8.3e-48 194.5 149 68.5
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 8.3e-48 194.5 123 74.0
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 8.3e-48 194.5 116 81.0
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 9.2e-47 191.0 149 67.1
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.6e-46 190.3 126 73.0
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.3e-45 187.2 142 68.3
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.7e-45 186.8 137 67.9
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 5.0e-45 185.3 167 62.9
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 1.5e-44 183.7 169 61.5
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 1.6e-43 180.3 116 75.9
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 2.8e-43 179.5 103 84.5
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 4.7e-43 178.7 166 57.8
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 3.7e-40 169.1 165 53.3
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 2.4e-39 166.4 121 75.2
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 5.1e-37 158.7 165 50.3
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 3.3e-36 156.0 126 60.3
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 9.5e-36 154.5 132 62.9
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.4e-33 145.6 111 69.4
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 3.0e-29 132.9 97 76.3
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.3e-08 64.3 40 72.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.9e-08 63.2 39 74.4


User provided reference genes

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