Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16984 Brassica carinata HOM05D010911 ORTHO05D024084 6.8e-204 713.8 361 100.0
BolC2t10979H Brassica oleracea HOM05D010911 ORTHO05D024084 1.2e-91 340.9 202 88.6
C02p48850 Brassica napus HOM05D010911 ORTHO05D024084 9.6e-89 331.3 202 87.1
C01p19620 Brassica napus HOM05D010911 ORTHO05D024084 5.8e-86 322.0 205 84.4
C02p48840 Brassica napus HOM05D010911 ORTHO05D024084 6.7e-42 175.6 88 94.3
C03p41980 Brassica napus HOM05D010911 ORTHO05D100302 1.5e-33 147.9 74 98.6
Sp2g12380 Schrenkiella parvula HOM05D000297 ORTHO05D000193 4.4e-33 146.4 93 80.6
C09p12520 Brassica napus HOM05D031612 ORTHO05D041637 2.2e-32 144.1 152 59.9
CARHR173640 Cardamine hirsuta HOM05D000297 ORTHO05D000193 6.3e-32 142.5 93 77.4
Thhalv10001185m.g Eutrema salsugineum HOM05D000297 ORTHO05D000193 8.2e-32 142.1 93 77.4
AT5G47670 Arabidopsis thaliana HOM05D000297 ORTHO05D000193 1.4e-31 141.4 93 77.4
AL8G10280 Arabidopsis lyrata HOM05D000297 ORTHO05D000193 5.3e-31 139.4 93 75.3
BcaC04g21608 Brassica carinata HOM05D000297 ORTHO05D000193 2.2e-29 134.0 77 83.1
BcaC06g34233 Brassica carinata HOM05D000297 ORTHO05D000193 2.9e-29 133.7 93 68.8
BolC7t43674H Brassica oleracea HOM05D000297 ORTHO05D000193 2.9e-29 133.7 93 68.8
BolC9t55854H Brassica oleracea HOM05D000297 ORTHO05D000193 2.9e-29 133.7 77 83.1
Carub.0008s0011 Capsella rubella HOM05D000297 ORTHO05D000193 2.9e-29 133.7 93 73.1
C09p29910 Brassica napus HOM05D000297 ORTHO05D000193 1.1e-28 131.7 77 81.8
C07p31330 Brassica napus HOM05D000297 ORTHO05D000193 1.5e-28 131.3 93 67.7
A06p44870 Brassica napus HOM05D000297 ORTHO05D000193 2.5e-28 130.6 93 67.7
A09p23170 Brassica napus HOM05D000297 ORTHO05D000193 3.6e-27 126.7 77 77.9
BraA09t37920Z Brassica rapa HOM05D000297 ORTHO05D000193 3.6e-27 126.7 77 77.9
BcaC06g31351 Brassica carinata HOM05D000297 ORTHO05D000193 4.7e-27 126.3 94 70.2
BcaB07g30765 Brassica carinata HOM05D000297 ORTHO05D000193 1.3e-24 118.2 81 71.6
Aa31sc662G40 Aethionema arabicum HOM05D000297 ORTHO05D000193 1.8e-23 114.4 85 67.1
C02p03040 Brassica napus HOM05D008960 ORTHO05D019923 1.2e-19 101.7 145 49.0
C02p10910 Brassica napus HOM05D010911 ORTHO05D041405 4.0e-18 96.7 264 36.7
BolC2t07161H Brassica oleracea HOM05D010911 ORTHO05D041405 4.0e-18 96.7 264 36.7
BraA10t42359Z Brassica rapa HOM05D008960 ORTHO05D019923 3.4e-17 93.6 145 49.0
BcaC08g44116 Brassica carinata HOM05D012955 ORTHO05D013233 1.7e-16 91.3 109 54.1
C01p11480 Brassica napus HOM05D012955 ORTHO05D013233 1.4e-15 88.2 109 54.1
C07p34530 Brassica napus HOM05D009883 ORTHO05D042457 4.1e-15 86.7 78 65.4
BolC7t43984H Brassica oleracea HOM05D009883 ORTHO05D042457 4.1e-15 86.7 78 65.4
BolC1t01117H Brassica oleracea HOM05D012955 ORTHO05D013233 7.0e-15 85.9 109 53.2
C08p32300 Brassica napus HOM05D010756 ORTHO05D000925 7.7e-14 82.4 80 58.8
BolC8t50844H Brassica oleracea HOM05D010756 ORTHO05D000925 7.7e-14 82.4 80 58.8
BcaNung03341 Brassica carinata HOM05D010911 ORTHO05D032845 1.0e-13 82.0 163 42.9
C07p23330 Brassica napus HOM05D010911 ORTHO05D032845 1.0e-13 82.0 163 42.9
BolC7t42866H Brassica oleracea HOM05D010911 ORTHO05D032845 1.0e-13 82.0 99 55.6
BcaB02g07877 Brassica carinata HOM05D009883 ORTHO05D014964 2.9e-13 80.5 86 55.8
BcaC03g13094 Brassica carinata HOM05D012955 ORTHO05D013233 2.9e-13 80.5 109 54.1
BolC2t06001H Brassica oleracea HOM05D012955 ORTHO05D013233 2.9e-13 80.5 109 54.1
BcaC08g44551 Brassica carinata HOM05D010756 ORTHO05D023874 5.0e-13 79.7 80 57.5
BolC6t35759H Brassica oleracea HOM05D010756 ORTHO05D000925 5.0e-13 79.7 74 62.2
BcaC05g30415 Brassica carinata HOM05D010756 ORTHO05D023874 8.6e-13 79.0 80 56.2
BcaB07g32459 Brassica carinata HOM05D009883 ORTHO05D014964 1.1e-12 78.6 76 60.5
BcaC09g51604 Brassica carinata HOM05D010911 ORTHO05D013233 1.5e-12 78.2 76 64.5
C01p16740 Brassica napus HOM05D009883 ORTHO05D014964 1.5e-12 78.2 86 61.6
C05p06360 Brassica napus HOM05D009883 ORTHO05D024588 1.5e-12 78.2 77 63.6
BcaC07g40017 Brassica carinata HOM05D010911 ORTHO05D013233 2.5e-12 77.4 78 56.4
C07p55460 Brassica napus HOM05D009883 ORTHO05D014964 3.2e-12 77.0 77 63.6
BolC8t47090H Brassica oleracea HOM05D009883 ORTHO05D013233 4.2e-12 76.6 74 60.8
C08p16430 Brassica napus HOM05D009883 ORTHO05D024588 7.2e-12 75.9 77 62.3
BolC5t29233H Brassica oleracea HOM05D009883 ORTHO05D024588 7.2e-12 75.9 77 62.3
BcaB07g32252 Brassica carinata HOM05D009883 ORTHO05D000925 1.6e-11 74.7 81 55.6
BolC3t16808H Brassica oleracea HOM05D009883 ORTHO05D014964 6.1e-11 72.8 65 63.1
BcaB01g04117 Brassica carinata HOM05D010911 ORTHO05D013233 1.0e-10 72.0 110 52.7
C08p09880 Brassica napus HOM05D008960 ORTHO05D019923 1.0e-10 72.0 72 58.3
BcaC07g38237 Brassica carinata HOM05D008960 ORTHO05D019923 1.4e-10 71.6 72 58.3
A05p29390 Brassica napus HOM05D009883 ORTHO05D014964 4.0e-10 70.1 55 72.7
BolC8t48664H Brassica oleracea HOM05D008960 ORTHO05D019923 4.0e-10 70.1 72 56.9
C08p33880 Brassica napus HOM05D009883 ORTHO05D024588 5.2e-10 69.7 77 59.7
BraA03t13396Z Brassica rapa HOM05D009883 ORTHO05D024588 1.2e-09 68.6 52 71.2
BolC4t27575H Brassica oleracea HOM05D009883 ORTHO05D014964 1.5e-09 68.2 55 69.1
C03p45410 Brassica napus HOM05D009883 ORTHO05D014964 2.0e-09 67.8 55 67.3
BcaB06g26236 Brassica carinata HOM05D010911 ORTHO05D013233 3.4e-09 67.0 64 62.5
BraA02t08675Z Brassica rapa HOM05D001239 ORTHO05D000925 2.8e-08 63.9 77 49.4
BraA04t17503Z Brassica rapa HOM05D001239 ORTHO05D000925 3.7e-08 63.5 73 50.7
C06p08080 Brassica napus HOM05D001239 ORTHO05D000925 4.9e-08 63.2 74 51.4
BcaC05g27393 Brassica carinata HOM05D030501 ORTHO05D032957 6.3e-08 62.8 180 31.7
BcaNung01985 Brassica carinata HOM05D025747 ORTHO05D027206 6.3e-08 62.8 54 66.7
C02p55990 Brassica napus HOM05D010036 ORTHO05D018636 6.3e-08 62.8 84 47.6
C02p57290 Brassica napus HOM05D025747 ORTHO05D027206 6.3e-08 62.8 54 66.7
C07p63750 Brassica napus HOM05D025747 ORTHO05D027206 6.3e-08 62.8 54 66.7
BolC6t37992H Brassica oleracea HOM05D010756 ORTHO05D000925 6.3e-08 62.8 77 49.4
BcaC09g51105 Brassica carinata HOM05D009883 ORTHO05D014964 1.1e-07 62.0 64 64.1
C03p49100 Brassica napus HOM05D008960 ORTHO05D019923 1.4e-07 61.6 58 56.9
C06p23680 Brassica napus HOM05D008960 ORTHO05D019923 2.4e-07 60.8 58 56.9
C03p48840 Brassica napus HOM05D025747 ORTHO05D027206 3.1e-07 60.5 54 64.8
C05p20040 Brassica napus HOM05D009883 ORTHO05D013233 9.2e-07 58.9 49 69.4
C04p60840 Brassica napus HOM05D009883 ORTHO05D014964 1.2e-06 58.5 52 63.5
BolC6t35891H Brassica oleracea HOM05D010911 ORTHO05D000925 2.0e-06 57.8 71 50.7
BcaC01g01483 Brassica carinata HOM05D001239 ORTHO05D000925 2.7e-06 57.4 72 51.4
BraA10t43824Z Brassica rapa HOM05D001239 ORTHO05D000925 3.5e-06 57.0 72 50.0
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 5.9e-06 56.2 69 44.9


User provided reference genes

Program Settings