Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 1.2e-192 676.8 454 100.0
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 1.1e-185 653.7 466 92.7
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 1.1e-185 653.7 466 92.7
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 1.0e-159 567.4 466 83.7
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 6.3e-146 521.5 469 80.0
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 4.8e-138 495.4 469 71.6
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 2.7e-125 453.0 466 73.4
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 8.8e-116 421.4 469 64.6
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 9.8e-115 417.9 469 68.9
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 2.9e-98 363.2 469 63.5
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.7e-87 327.4 459 61.0
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.7e-79 300.8 460 58.5
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 1.8e-60 237.7 458 47.6
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.7e-50 204.5 464 44.2
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 9.3e-49 198.7 457 49.9
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 6.7e-47 192.6 442 41.4
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 2.8e-45 187.2 457 42.9
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 6.7e-39 166.0 463 45.1
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 6.3e-37 159.5 456 45.2
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 1.1e-36 158.7 463 44.3
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 1.7e-34 151.4 458 44.3
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 1.1e-33 148.7 456 44.3
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 1.1e-33 148.7 456 44.3
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 4.6e-32 143.3 458 43.7
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 6.9e-28 129.4 431 42.5
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 5.5e-25 119.8 84 75.0
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 1.1e-20 105.5 302 39.7
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.1e-20 105.5 444 37.8
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 3.1e-20 104.0 274 35.8
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 1.2e-19 102.1 174 59.8
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 2.0e-19 101.3 66 69.7
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 2.6e-19 100.9 74 64.9
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 1.7e-18 98.2 66 68.2
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 2.2e-18 97.8 177 44.1
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 2.2e-18 97.8 182 58.2
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 2.9e-18 97.4 176 55.7
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 8.5e-18 95.9 74 63.5
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 1.4e-17 95.1 72 62.5
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 1.9e-17 94.7 68 60.3
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 1.9e-17 94.7 68 61.8
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 3.2e-17 94.0 68 64.7
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 3.2e-17 94.0 453 43.5
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.2e-17 93.6 74 62.2
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.2e-17 93.6 74 62.2
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 4.2e-17 93.6 72 62.5
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 5.5e-17 93.2 163 46.0
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 5.5e-17 93.2 172 56.4
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 5.5e-17 93.2 69 62.3
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 7.2e-17 92.8 68 57.4
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 1.6e-16 91.7 67 56.7
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 1.6e-16 91.7 172 57.0
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 1.6e-16 91.7 67 58.2
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 1.6e-16 91.7 67 58.2
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 1.6e-16 91.7 67 59.7
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 2.1e-16 91.3 68 57.4
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.1e-16 91.3 74 62.2
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.1e-16 91.3 74 62.2
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 2.7e-16 90.9 66 56.1
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 4.7e-16 90.1 175 57.7
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 4.7e-16 90.1 68 54.4
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 4.7e-16 90.1 68 54.4
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 1.4e-15 88.6 68 55.9
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 1.8e-15 88.2 67 52.2
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 2.3e-15 87.8 68 55.9
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 2.3e-15 87.8 68 60.3
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 2.3e-15 87.8 74 62.2
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 3.0e-15 87.4 77 59.7
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 5.2e-15 86.7 63 60.3
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 8.8e-15 85.9 72 59.7
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 1.1e-14 85.5 77 55.8
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 2.0e-14 84.7 61 57.4
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 2.6e-14 84.3 71 53.5
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 3.3e-14 84.0 68 57.4
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 3.3e-14 84.0 145 39.3
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 3.3e-14 84.0 145 39.3
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 5.7e-14 83.2 68 52.9
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 7.4e-14 82.8 78 52.6
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.3e-13 82.0 80 51.2
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 1.7e-13 81.6 79 53.2
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 2.8e-13 80.9 74 58.1
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 3.7e-13 80.5 79 50.6
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 6.3e-13 79.7 77 53.2
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 6.3e-13 79.7 77 53.2
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 8.2e-13 79.3 77 51.9
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 8.2e-13 79.3 76 53.9
MELO3C004015.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.4e-12 78.6 105 40.0
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 2.4e-12 77.8 68 50.0
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 2.4e-12 77.8 77 50.6
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 2.4e-12 77.8 88 46.6
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 4.1e-12 77.0 78 44.9
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 4.1e-12 77.0 76 52.6
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 5.3e-12 76.6 74 55.4
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 5.3e-12 76.6 77 55.8
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 7.0e-12 76.3 450 34.7
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 9.1e-12 75.9 75 48.0
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 1.2e-11 75.5 84 48.8
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 1.2e-11 75.5 77 51.9
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 1.2e-11 75.5 77 51.9
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 2.0e-11 74.7 61 55.7
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 2.0e-11 74.7 77 50.6
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 5.9e-11 73.2 76 51.3
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 1.0e-10 72.4 78 42.3
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 2.9e-10 70.9 77 46.8
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 2.9e-10 70.9 51 56.9
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 3.8e-10 70.5 74 45.9
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 5.0e-10 70.1 69 55.1
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 5.0e-10 70.1 55 54.5
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 8.5e-10 69.3 49 61.2
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 8.5e-10 69.3 49 61.2
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 8.5e-10 69.3 77 44.2
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 1.1e-09 68.9 51 60.8
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 2.5e-09 67.8 77 42.9
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 2.5e-09 67.8 44 70.5
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 2.5e-09 67.8 77 42.9
AagrBONN_evm.TU.Sc2ySwM_344.871 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.2e-09 67.4 213 23.9
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 3.2e-09 67.4 46 60.9
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 4.2e-09 67.0 44 65.9
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 4.2e-09 67.0 44 65.9
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 4.2e-09 67.0 49 63.3
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 4.2e-09 67.0 77 42.9
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 5.5e-09 66.6 49 61.2
Ciclev10006927m.g Citrus clementina HOM05D000001 ORTHO05D000003 9.4e-09 65.9 188 26.1
Eucgr.A00839 Eucalyptus grandis HOM05D000001 ORTHO05D000003 9.4e-09 65.9 171 24.0
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 1.2e-08 65.5 56 53.6
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.2e-08 65.5 79 43.0
Atru.chr1.145 Acer truncatum HOM05D000001 ORTHO05D000003 4.7e-08 63.5 197 23.4
PGR142G3618 Punica granatum HOM05D000001 ORTHO05D000003 8.0e-08 62.8 201 25.4
AagrBONN_evm.TU.Sc2ySwM_362.2053 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-07 62.4 180 23.3
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 1.0e-07 62.4 43 62.8
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 1.0e-07 62.4 43 62.8
CSS0017456 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.8e-07 61.6 197 24.4
CSS0048951 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.8e-07 61.6 197 24.4
PGR042G2440 Punica granatum HOM05D000001 ORTHO05D009739 2.3e-07 61.2 221 22.6
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.0e-07 60.8 40 57.5
MD07G1076300 Malus domestica HOM05D000001 ORTHO05D000003 4.0e-07 60.5 177 26.0
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 5.2e-07 60.1 70 41.4
ATR0568G078 Amborella trichopoda HOM05D053880 ORTHO05D031076 6.8e-07 59.7 95 36.8
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 6.8e-07 59.7 39 61.5
Prupe.2G097100 Prunus persica HOM05D000001 ORTHO05D000003 6.8e-07 59.7 174 25.3
Dinv31157 Davidia involucrata HOM05D007063 ORTHO05D008822 8.8e-07 59.3 93 31.2
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 8.8e-07 59.3 51 51.0
Lalb_Chr01g0013691 Lupinus albus HOM05D001514 ORTHO05D007015 2.6e-06 57.8 45 60.0
Rhsim03G0204200 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.6e-06 57.8 199 23.1
CSS0032184 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 3.4e-06 57.4 169 21.3
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 3.4e-06 57.4 107 29.9
Sed0016373 Sechium edule HOM05D000001 ORTHO05D000003 3.4e-06 57.4 176 23.3
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 3.4e-06 57.4 129 28.7
CSS0050030 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 4.4e-06 57.0 169 21.3
MELO3C030050.2 Cucumis melo HOM05D000001 ORTHO05D000003 4.4e-06 57.0 197 22.3
Dinv35320 Davidia involucrata HOM05D000001 ORTHO05D000003 4.4e-06 57.0 199 24.1
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 4.4e-06 57.0 113 33.6
Actinidia33593 Actinidia chinensis HOM05D000001 ORTHO05D000003 5.7e-06 56.6 169 21.3
ATR0745G087 Amborella trichopoda HOM05D053880 ORTHO05D031076 7.5e-06 56.2 69 42.0
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 7.5e-06 56.2 92 38.0
Duzib132G1008 Durio zibethinus HOM05D003056 ORTHO05D003422 7.5e-06 56.2 156 27.6
Gohir.D12G065400 Gossypium hirsutum HOM05D000891 ORTHO05D000761 7.5e-06 56.2 111 27.9
Gorai.008G068700 Gossypium raimondii HOM05D000891 ORTHO05D000761 7.5e-06 56.2 111 27.9
PGR004G0089 Punica granatum HOM05D000001 ORTHO05D000003 7.5e-06 56.2 168 21.4
Solyc01g081110.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.5e-06 56.2 229 22.7
ATR0605G188 Amborella trichopoda HOM05D000001 ORTHO05D013996 9.7e-06 55.8 225 20.9
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 9.7e-06 55.8 102 30.4
Potri.013G103600 Populus trichocarpa HOM05D000001 ORTHO05D000003 9.7e-06 55.8 171 21.6


User provided reference genes

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