Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16819 Brassica carinata HOM05D067971 ORTHO05D023940 2.0e-92 342.4 170 100.0
BolC1t01666H Brassica oleracea HOM05D005885 ORTHO05D023940 1.5e-23 113.6 100 63.0
BolC2t10740H Brassica oleracea HOM05D005885 ORTHO05D023940 3.6e-22 109.0 51 98.0
BolC3t14965H Brassica oleracea HOM05D001034 ORTHO05D023940 1.7e-19 100.1 58 79.3
C02p46920 Brassica napus HOM05D067971 ORTHO05D023940 5.4e-10 68.6 36 97.2
C09p36870 Brassica napus HOM05D001034 ORTHO05D040586 3.0e-08 62.8 39 76.9
BolC9t56518H Brassica oleracea HOM05D001034 ORTHO05D040586 3.9e-08 62.4 38 78.9
CARHR279780 Cardamine hirsuta HOM05D001034 ORTHO05D000955 1.1e-07 60.8 50 66.0
BcaB05g23137 Brassica carinata HOM05D001034 ORTHO05D000955 1.5e-07 60.5 50 66.0
AL8G43500 Arabidopsis lyrata HOM05D001034 ORTHO05D000955 4.3e-07 58.9 50 64.0
BcaC09g49966 Brassica carinata HOM05D001034 ORTHO05D000955 5.6e-07 58.5 36 77.8
A01p24600 Brassica napus HOM05D001034 ORTHO05D000955 5.6e-07 58.5 36 77.8
C01p30690 Brassica napus HOM05D001034 ORTHO05D000955 5.6e-07 58.5 36 77.8
BolC1t03003H Brassica oleracea HOM05D001034 ORTHO05D000955 5.6e-07 58.5 36 77.8
BraA01t02371Z Brassica rapa HOM05D001034 ORTHO05D000955 5.6e-07 58.5 36 77.8
Sp5g12410 Schrenkiella parvula HOM05D001034 ORTHO05D000955 5.6e-07 58.5 36 77.8
Actinidia36412 Actinidia chinensis HOM05D001034 ORTHO05D000955 7.4e-07 58.2 38 73.7
CAN.G416.36 Capsicum annuum HOM05D001034 ORTHO05D000955 7.4e-07 58.2 35 74.3
Peaxi162Scf00160g00837 Petunia axillaris HOM05D001034 ORTHO05D000955 7.4e-07 58.2 35 74.3
Rhsim10G0049400 Rhododendron simsii HOM05D001034 ORTHO05D000955 7.4e-07 58.2 72 45.8
Cc07_g07510 Coffea canephora HOM05D001034 ORTHO05D000955 9.6e-07 57.8 50 62.0
Haze_03971 Corylus avellana HOM05D001034 ORTHO05D000955 9.6e-07 57.8 47 63.8
unitig_736.g22612 Utricularia gibba HOM05D001034 ORTHO05D000955 9.6e-07 57.8 53 60.4
Aa31LG1G16290 Aethionema arabicum HOM05D001034 ORTHO05D000955 1.3e-06 57.4 50 62.0
AL5G29630 Arabidopsis lyrata HOM05D001034 ORTHO05D000955 1.3e-06 57.4 36 75.0
AT3G49680 Arabidopsis thaliana HOM05D001034 ORTHO05D000955 1.3e-06 57.4 36 75.0
Carub.0005s1603 Capsella rubella HOM05D001034 ORTHO05D000955 1.3e-06 57.4 36 75.0
CARHR158750 Cardamine hirsuta HOM05D001034 ORTHO05D000955 1.3e-06 57.4 50 64.0
FAN20G1333 Fragaria x ananassa HOM05D001034 ORTHO05D000955 1.3e-06 57.4 76 46.1
SGA_v2.0_scaffold121G33070 Striga asiatica HOM05D001034 ORTHO05D000955 1.3e-06 57.4 50 62.0
unitig_899.g14593 Utricularia gibba HOM05D001034 ORTHO05D000955 1.3e-06 57.4 49 63.3
Atru.chr3.1078 Acer truncatum HOM05D001034 ORTHO05D000955 1.6e-06 57.0 82 46.3
CAN.G1343.19 Capsicum annuum HOM05D001034 ORTHO05D000955 1.6e-06 57.0 50 62.0
CiPaw.07G038300 Carya illinoinensis HOM05D001034 ORTHO05D000955 1.6e-06 57.0 50 62.0
Hma1.2p1_0424F.1_g150330 Hydrangea macrophylla HOM05D001034 ORTHO05D000955 1.6e-06 57.0 34 76.5
Manes.12G118700 Manihot esculenta HOM05D001034 ORTHO05D000955 1.6e-06 57.0 34 76.5
Nitab4.5_0003478g0020 Nicotiana tabacum HOM05D001034 ORTHO05D000955 1.6e-06 57.0 50 62.0
Peaxi162Scf00096g01719 Petunia axillaris HOM05D001034 ORTHO05D000955 1.6e-06 57.0 50 62.0
SalBow3G2307 Salvia bowleyana HOM05D001034 ORTHO05D000955 1.6e-06 57.0 50 62.0
Solyc02g091970.4 Solanum lycopersicum HOM05D001034 ORTHO05D000955 1.6e-06 57.0 50 62.0
Sopen02g036540 Solanum pennellii HOM05D001034 ORTHO05D000955 1.6e-06 57.0 50 62.0
PGSC0003DMG400021425 Solanum tuberosum HOM05D001034 ORTHO05D000955 1.6e-06 57.0 50 62.0
THA.LOC104801908 Tarenaya hassleriana HOM05D001034 ORTHO05D000955 1.6e-06 57.0 36 75.0
THA.LOC104808469 Tarenaya hassleriana HOM05D001034 ORTHO05D000955 1.6e-06 57.0 36 75.0
THA.LOC104821218 Tarenaya hassleriana HOM05D001034 ORTHO05D000955 1.6e-06 57.0 36 75.0
Actinidia11954 Actinidia chinensis HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
MSTRG.2800 Avicennia marina HOM05D001034 ORTHO05D000955 2.1e-06 56.6 50 62.0
A08p03370 Brassica napus HOM05D001034 ORTHO05D000955 2.1e-06 56.6 77 46.8
BolC3t21259H Brassica oleracea HOM05D001034 ORTHO05D000955 2.1e-06 56.6 77 46.8
Cfa006786 Carpinus fangiana HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
COL.COLO4_11633 Corchorus olitorius HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
ECA233G3472 Erigeron canadensis HOM05D001034 ORTHO05D000955 2.1e-06 56.6 50 62.0
FvH4_1g18510 Fragaria vesca HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
FAN19G0276 Fragaria x ananassa HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
FAN23G1668 Fragaria x ananassa HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
FAN26G3394 Fragaria x ananassa HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
FAN28G0136 Fragaria x ananassa HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
Gohir.A11G211200 Gossypium hirsutum HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
Gohir.D11G211900 Gossypium hirsutum HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
Gorai.007G227600 Gossypium raimondii HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
HanXRQChr07g0190981 Helianthus annuus HOM05D001034 ORTHO05D000955 2.1e-06 56.6 50 62.0
MD02G1191100 Malus domestica HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
MD02G1191300 Malus domestica HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
MD15G1302500 Malus domestica HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
Nn3g18439 Nelumbo nucifera HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
Nn4g24485 Nelumbo nucifera HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
Nitab4.5_0000354g0020 Nicotiana tabacum HOM05D001034 ORTHO05D000955 2.1e-06 56.6 35 71.4
Nitab4.5_0001646g0050 Nicotiana tabacum HOM05D001034 ORTHO05D000955 2.1e-06 56.6 35 71.4
Nitab4.5_0003724g0020 Nicotiana tabacum HOM05D001034 ORTHO05D000955 2.1e-06 56.6 35 71.4
Oeu013350.1 Olea europaea HOM05D001034 ORTHO05D000955 2.1e-06 56.6 34 76.5
Oeu061536.1 Olea europaea HOM05D001034 ORTHO05D000955 2.1e-06 56.6 34 76.5
Oeu061810.1 Olea europaea HOM05D001034 ORTHO05D000955 2.1e-06 56.6 34 76.5
Peaxi162Scf00628g00006 Petunia axillaris HOM05D001034 ORTHO05D000955 2.1e-06 56.6 35 74.3
Potri.007G008000 Populus trichocarpa HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
QL06p038426 Quercus lobata HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
RcHm_v2.0_Chr2g0109141 Rosa chinensis HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
TWI12G0127 Tripterygium wilfordii HOM05D001034 ORTHO05D000955 2.1e-06 56.6 33 75.8
TWI53G0655 Tripterygium wilfordii HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
TWI74G0267 Tripterygium wilfordii HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
TAR376G0429 Trochodendron aralioides HOM05D001034 ORTHO05D000955 2.1e-06 56.6 36 75.0
CSS0039128 Camellia sinensis var. sinensis HOM05D001034 ORTHO05D000955 2.8e-06 56.2 50 58.0
CSS0044075 Camellia sinensis var. sinensis HOM05D001034 ORTHO05D000955 2.8e-06 56.2 50 58.0
CANSAT21G0415 Cannabis sativa HOM05D001034 ORTHO05D000955 2.8e-06 56.2 73 46.6
FAN27G2716 Fragaria x ananassa HOM05D001034 ORTHO05D000955 2.8e-06 56.2 37 73.0
Gohir.A05G263700 Gossypium hirsutum HOM05D001034 ORTHO05D000955 2.8e-06 56.2 34 73.5
Gohir.D05G266000 Gossypium hirsutum HOM05D001034 ORTHO05D000955 2.8e-06 56.2 34 73.5
Gorai.009G277800 Gossypium raimondii HOM05D001034 ORTHO05D000955 2.8e-06 56.2 34 73.5
Lsat_1_v5_gn_5_45560 Lactuca sativa HOM05D001034 ORTHO05D000955 2.8e-06 56.2 50 62.0
Lalb_Chr16g0379021 Lupinus albus HOM05D001034 ORTHO05D000955 2.8e-06 56.2 36 72.2
Hund05258 Selenicereus undatus HOM05D001034 ORTHO05D000955 2.8e-06 56.2 33 75.8
vmacro16487 Vaccinium macrocarpon HOM05D001034 ORTHO05D000955 2.8e-06 56.2 72 45.8
Aqoxy1G03498 Aquilegia oxysepala HOM05D001034 ORTHO05D000955 3.7e-06 55.8 36 75.0
Aqoxy7G01411 Aquilegia oxysepala HOM05D001034 ORTHO05D000955 3.7e-06 55.8 34 73.5
C03p89440 Brassica napus HOM05D001034 ORTHO05D000955 3.7e-06 55.8 77 46.8
CDE02G4321 Ceratophyllum demersum HOM05D001034 ORTHO05D000955 3.7e-06 55.8 36 75.0
CDE04G0326 Ceratophyllum demersum HOM05D001034 ORTHO05D000955 3.7e-06 55.8 36 75.0
DCAR_014322 Daucus carota HOM05D001034 ORTHO05D000955 3.7e-06 55.8 34 76.5
Dinv44919 Davidia involucrata HOM05D001034 ORTHO05D000955 3.7e-06 55.8 45 62.2
Migut.H00317 Erythranthe guttata HOM05D001034 ORTHO05D000955 3.7e-06 55.8 50 60.0
Lj2A424T68 Lonicera japonica HOM05D001034 ORTHO05D000955 3.7e-06 55.8 36 75.0
Lj2g0023341 Lotus japonicus HOM05D001034 ORTHO05D000955 3.7e-06 55.8 36 75.0
Manes.05G184700 Manihot esculenta HOM05D001034 ORTHO05D000955 3.7e-06 55.8 35 77.1
Nitab4.5_0000419g0010 Nicotiana tabacum HOM05D001034 ORTHO05D000955 3.7e-06 55.8 50 60.0
Nitab4.5_0002639g0010 Nicotiana tabacum HOM05D001034 ORTHO05D000955 3.7e-06 55.8 50 60.0
Phvul.009G075100 Phaseolus vulgaris HOM05D001034 ORTHO05D000955 3.7e-06 55.8 33 78.8
Sabra09G0064100 Salix brachista HOM05D001034 ORTHO05D000955 3.7e-06 55.8 35 71.4
Solyc07g021630.3 Solanum lycopersicum HOM05D001034 ORTHO05D000955 3.7e-06 55.8 35 71.4
Sopen07g011210 Solanum pennellii HOM05D001034 ORTHO05D000955 3.7e-06 55.8 35 71.4
SGA_v2.0_scaffold269G46266 Striga asiatica HOM05D001034 ORTHO05D000955 3.7e-06 55.8 50 60.0
VMungo1309G1768 Vigna mungo HOM05D001034 ORTHO05D000955 3.7e-06 55.8 33 78.8
BcaC07g39430 Brassica carinata HOM05D001034 ORTHO05D000955 4.8e-06 55.5 36 75.0
A06p18040 Brassica napus HOM05D001034 ORTHO05D000955 4.8e-06 55.5 36 75.0
A08p03360 Brassica napus HOM05D001034 ORTHO05D000955 4.8e-06 55.5 78 42.3
C08p24690 Brassica napus HOM05D001034 ORTHO05D000955 4.8e-06 55.5 36 75.0
BolC8t50083H Brassica oleracea HOM05D001034 ORTHO05D000955 4.8e-06 55.5 36 75.0
BraA06t24893Z Brassica rapa HOM05D001034 ORTHO05D000955 4.8e-06 55.5 36 75.0
BraA08t32368Z Brassica rapa HOM05D001034 ORTHO05D000955 4.8e-06 55.5 78 42.3
CSS0003140 Camellia sinensis var. sinensis HOM05D001034 ORTHO05D000955 4.8e-06 55.5 34 73.5
Cpa.g.sc129.58 Carica papaya HOM05D001034 ORTHO05D000955 4.8e-06 55.5 36 72.2
Haze_00896 Corylus avellana HOM05D001034 ORTHO05D000955 4.8e-06 55.5 43 58.1
Duzib093G0140 Durio zibethinus HOM05D001034 ORTHO05D000955 4.8e-06 55.5 48 58.3
Duzib264G0251 Durio zibethinus HOM05D001034 ORTHO05D000955 4.8e-06 55.5 36 72.2
Thhalv10010409m.g Eutrema salsugineum HOM05D001034 ORTHO05D000955 4.8e-06 55.5 50 60.0
Gohir.A05G212900 Gossypium hirsutum HOM05D001034 ORTHO05D000955 4.8e-06 55.5 33 75.8
Gohir.D05G216300 Gossypium hirsutum HOM05D001034 ORTHO05D000955 4.8e-06 55.5 33 75.8
Gorai.009G223000 Gossypium raimondii HOM05D001034 ORTHO05D000955 4.8e-06 55.5 33 75.8
PGR004G0848 Punica granatum HOM05D001034 ORTHO05D000955 4.8e-06 55.5 50 62.0
Sabra07G0006200 Salix brachista HOM05D001034 ORTHO05D000955 4.8e-06 55.5 36 72.2
Sc02g0008250 Simmondsia chinensis HOM05D001034 ORTHO05D000955 4.8e-06 55.5 33 72.7
Solyc03g043880.3 Solanum lycopersicum HOM05D001034 ORTHO05D000955 4.8e-06 55.5 50 58.0
Sopen03g007690 Solanum pennellii HOM05D001034 ORTHO05D000955 4.8e-06 55.5 50 58.0
PGSC0003DMG400017100 Solanum tuberosum HOM05D001034 ORTHO05D000955 4.8e-06 55.5 50 58.0
BcaB01g00684 Brassica carinata HOM05D001034 ORTHO05D000955 6.2e-06 55.1 36 75.0
BcaB04g17274 Brassica carinata HOM05D001034 ORTHO05D000955 6.2e-06 55.1 77 44.2
CANSAT21G2604 Cannabis sativa HOM05D001034 ORTHO05D000955 6.2e-06 55.1 35 74.3
AUR62033279 Chenopodium quinoa HOM05D001034 ORTHO05D000955 6.2e-06 55.1 33 72.7
Duzib187G1136 Durio zibethinus HOM05D001034 ORTHO05D000955 6.2e-06 55.1 36 72.2
Lj1g0016090 Lotus japonicus HOM05D001034 ORTHO05D000955 6.2e-06 55.1 33 75.8
Lj1g0025744 Lotus japonicus HOM05D001034 ORTHO05D000955 6.2e-06 55.1 33 75.8
Mapoly0063s0060 Marchantia polymorpha HOM05D001034 ORTHO05D000955 6.2e-06 55.1 34 73.5
Potri.009G082600 Populus trichocarpa HOM05D001034 ORTHO05D000955 6.2e-06 55.1 35 71.4
Sed0027666 Sechium edule HOM05D001034 ORTHO05D000955 6.2e-06 55.1 35 74.3
TWI12G0662 Tripterygium wilfordii HOM05D001034 ORTHO05D000955 6.2e-06 55.1 35 71.4
arahy.Tifrunner.gnm1.ann1.GL6CS5 Arachis hypogaea HOM05D001034 ORTHO05D000955 8.1e-06 54.7 35 74.3
arahy.Tifrunner.gnm1.ann1.WXR6C4 Arachis hypogaea HOM05D001034 ORTHO05D000955 8.1e-06 54.7 35 74.3
BraA08t32369Z Brassica rapa HOM05D001034 ORTHO05D000955 8.1e-06 54.7 77 45.5
Cc10_g07820 Coffea canephora HOM05D001034 ORTHO05D000955 8.1e-06 54.7 33 75.8
CsaV3_6G044420 Cucumis sativus L. HOM05D001034 ORTHO05D000955 8.1e-06 54.7 50 60.0
Hma1.2p1_2651F.1_g326160 Hydrangea macrophylla HOM05D001034 ORTHO05D000955 8.1e-06 54.7 45 60.0
Lalb_Chr23g0267691 Lupinus albus HOM05D001034 ORTHO05D000955 8.1e-06 54.7 35 74.3
Manes.05G184600 Manihot esculenta HOM05D001034 ORTHO05D000955 8.1e-06 54.7 35 74.3
Manes.13G107700 Manihot esculenta HOM05D001034 ORTHO05D000955 8.1e-06 54.7 36 72.2
Manes.18G051400 Manihot esculenta HOM05D001034 ORTHO05D000955 8.1e-06 54.7 35 74.3
Nitab4.5_0001646g0060 Nicotiana tabacum HOM05D001034 ORTHO05D000955 8.1e-06 54.7 35 71.4
Nitab4.5_0004211g0010 Nicotiana tabacum HOM05D001034 ORTHO05D000955 8.1e-06 54.7 35 71.4
Peaxi162Scf00861g00326 Petunia axillaris HOM05D001034 ORTHO05D000955 8.1e-06 54.7 35 68.6
Phvul.002G008700 Phaseolus vulgaris HOM05D001034 ORTHO05D000955 8.1e-06 54.7 36 72.2
Sp1g36940 Schrenkiella parvula HOM05D001034 ORTHO05D000955 8.1e-06 54.7 42 61.9
VMungo1215G1643 Vigna mungo HOM05D001034 ORTHO05D000955 8.1e-06 54.7 36 72.2


User provided reference genes

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