Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16779 Brassica carinata HOM05D006875 ORTHO05D008416 3.7e-88 328.2 163 100.0
BolC2t10706H Brassica oleracea HOM05D006875 ORTHO05D008416 3.7e-88 328.2 163 100.0
C02p46480 Brassica napus HOM05D006875 ORTHO05D008416 2.6e-86 322.0 163 98.8
Sp2g10480 Schrenkiella parvula HOM05D006875 ORTHO05D008416 8.2e-72 273.9 171 83.6
BcaC06g31539 Brassica carinata HOM05D006875 ORTHO05D008416 1.5e-70 269.6 165 82.4
Thhalv10001052m.g Eutrema salsugineum HOM05D006875 ORTHO05D008416 1.5e-70 269.6 174 81.0
Carub.0008s0244 Capsella rubella HOM05D006875 ORTHO05D008416 3.4e-70 268.5 172 80.2
AT5G45590 Arabidopsis thaliana HOM05D006875 ORTHO05D008416 5.0e-69 264.6 174 79.9
AL8G13090 Arabidopsis lyrata HOM05D006875 ORTHO05D008416 6.5e-69 264.2 171 81.3
A06p46520 Brassica napus HOM05D006875 ORTHO05D008416 2.7e-67 258.8 165 81.8
BolC7t43404H Brassica oleracea HOM05D006875 ORTHO05D008416 2.7e-67 258.8 164 81.7
BraA06t27526Z Brassica rapa HOM05D006875 ORTHO05D008416 2.7e-67 258.8 165 81.8
CARHR176440 Cardamine hirsuta HOM05D006875 ORTHO05D008416 2.7e-67 258.8 169 78.1
BcaC06g34424 Brassica carinata HOM05D006875 ORTHO05D008416 2.0e-65 252.7 164 80.5
C07p28660 Brassica napus HOM05D006875 ORTHO05D008416 2.0e-65 252.7 164 80.5
Aa31LG9G7450 Aethionema arabicum HOM05D006875 ORTHO05D008416 1.5e-62 243.0 171 74.9
A02p29280 Brassica napus HOM05D006875 ORTHO05D008416 3.0e-58 228.8 163 76.1
BraA02t07958Z Brassica rapa HOM05D006875 ORTHO05D008416 3.0e-58 228.8 163 76.1
THA.LOC104806179 Tarenaya hassleriana HOM05D006875 ORTHO05D008416 1.7e-56 223.0 178 67.4
Actinidia18144 Actinidia chinensis HOM05D006875 ORTHO05D008416 1.1e-39 167.2 178 56.2
Nitab4.5_0000109g0180 Nicotiana tabacum HOM05D006875 ORTHO05D008416 2.0e-38 162.9 168 56.0
Actinidia14761 Actinidia chinensis HOM05D006875 ORTHO05D008416 2.9e-37 159.1 178 55.6
CiPaw.12G070200 Carya illinoinensis HOM05D006875 ORTHO05D008416 3.8e-37 158.7 176 54.0
Solyc06g066190.3 Solanum lycopersicum HOM05D006875 ORTHO05D008416 1.1e-36 157.1 168 56.5
CSS0027486 Camellia sinensis var. sinensis HOM05D006875 ORTHO05D008416 5.5e-36 154.8 185 53.0
PGSC0003DMG400020470 Solanum tuberosum HOM05D006875 ORTHO05D008416 7.2e-36 154.5 170 55.9
Lalb_Chr05g0215561 Lupinus albus HOM05D006875 ORTHO05D008416 9.4e-36 154.1 169 53.8
Peaxi162Scf00185g01627 Petunia axillaris HOM05D006875 ORTHO05D008416 4.7e-35 151.8 170 56.5
Duzib068G0693 Durio zibethinus HOM05D006875 ORTHO05D008416 6.1e-35 151.4 162 51.2
Nitab4.5_0005761g0030 Nicotiana tabacum HOM05D006875 ORTHO05D008416 6.1e-35 151.4 184 50.5
Sopen06g024670 Solanum pennellii HOM05D006875 ORTHO05D008416 6.1e-35 151.4 172 54.7
Ca_25148_v3 Cicer arietinum L. HOM05D006875 ORTHO05D008416 8.0e-35 151.0 163 55.2
Duzib205G1866 Durio zibethinus HOM05D006875 ORTHO05D008416 8.0e-35 151.0 167 51.5
Prupe.5G024300 Prunus persica HOM05D006875 ORTHO05D008416 2.3e-34 149.4 172 51.7
Potri.001G133600 Populus trichocarpa HOM05D006875 ORTHO05D008416 8.8e-34 147.5 180 53.3
EL10Ac5g11986 Beta vulgaris HOM05D006875 ORTHO05D008416 2.0e-33 146.4 174 51.1
RcHm_v2.0_Chr7g0212891 Rosa chinensis HOM05D006875 ORTHO05D008416 2.0e-33 146.4 170 52.9
Cc08_g04080 Coffea canephora HOM05D006875 ORTHO05D008416 5.7e-33 144.8 169 52.1
Lalb_Chr16g0380861 Lupinus albus HOM05D006875 ORTHO05D008416 7.5e-33 144.4 169 54.4
GSVIVG01011544001 Vitis vinifera HOM05D006875 ORTHO05D008416 9.8e-33 144.1 143 55.9
Dinv29039 Davidia involucrata HOM05D006875 ORTHO05D008416 1.7e-32 143.3 170 52.9
TPR.G9090 Trifolium pratense HOM05D006875 ORTHO05D008416 2.2e-32 142.9 167 50.9
Ah.12g055650 Amaranthus hybridus HOM05D006875 ORTHO05D008416 3.7e-32 142.1 171 53.2
Hund14386 Selenicereus undatus HOM05D006875 ORTHO05D008416 3.7e-32 142.1 185 48.1
Sc01g0006090 Simmondsia chinensis HOM05D006875 ORTHO05D008416 6.3e-32 141.4 175 51.4
Gohir.D08G173100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 8.3e-32 141.0 172 48.8
Glyma.01G009800 Glycine max HOM05D006875 ORTHO05D008416 2.4e-31 139.4 163 51.5
Cfa012555 Carpinus fangiana HOM05D006875 ORTHO05D008416 4.1e-31 138.7 172 48.8
Migut.E01333 Erythranthe guttata HOM05D006875 ORTHO05D008416 5.4e-31 138.3 181 48.6
Oeu044464.1 Olea europaea HOM05D006875 ORTHO05D008416 5.4e-31 138.3 96 74.0
arahy.Tifrunner.gnm1.ann1.7H2E39 Arachis hypogaea HOM05D006875 ORTHO05D008416 7.0e-31 137.9 178 49.4
arahy.Tifrunner.gnm1.ann1.J2I619 Arachis hypogaea HOM05D006875 ORTHO05D008416 7.0e-31 137.9 178 49.4
Sabra01G0103300 Salix brachista HOM05D006875 ORTHO05D008416 7.0e-31 137.9 98 69.4
MSTRG.13901 Avicennia marina HOM05D006875 ORTHO05D008416 1.2e-30 137.1 178 50.6
Glyma.09G211300 Glycine max HOM05D006875 ORTHO05D008416 2.0e-30 136.3 166 54.2
TAR629G1490 Trochodendron aralioides HOM05D006875 ORTHO05D008416 3.5e-30 135.6 167 51.5
Medtr5g027470 Medicago truncatula HOM05D006875 ORTHO05D008416 4.5e-30 135.2 167 50.3
SGA_v2.0_scaffold144G35866 Striga asiatica HOM05D006875 ORTHO05D008416 1.0e-29 134.0 174 49.4
Phvul.002G132700 Phaseolus vulgaris HOM05D006875 ORTHO05D008416 1.7e-29 133.3 165 52.7
Sed0011128 Sechium edule HOM05D006875 ORTHO05D008416 1.7e-29 133.3 173 48.6
SalBow4G1271 Salvia bowleyana HOM05D006875 ORTHO05D008416 5.0e-29 131.7 178 51.7
HanXRQChr16g0510981 Helianthus annuus HOM05D006875 ORTHO05D008416 3.3e-28 129.0 169 49.1
Potri.003G099900 Populus trichocarpa HOM05D006875 ORTHO05D008416 3.3e-28 129.0 180 48.3
VMungo1215G2146 Vigna mungo HOM05D006875 ORTHO05D008416 3.3e-28 129.0 163 51.5
Eucgr.D02619 Eucalyptus grandis HOM05D006875 ORTHO05D008416 7.2e-28 127.9 174 48.3
Nn1g01960 Nelumbo nucifera HOM05D006875 ORTHO05D008416 1.2e-27 127.1 173 48.0
unitig_0.g2213 Utricularia gibba HOM05D006875 ORTHO05D008416 1.2e-27 127.1 92 69.6
CsaV3_3G030390 Cucumis sativus L. HOM05D006875 ORTHO05D008416 1.6e-27 126.7 173 45.7
Lj2g0021598 Lotus japonicus HOM05D006875 ORTHO05D008416 3.6e-27 125.6 170 49.4
CDE05G0418 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 2.3e-26 122.9 97 63.9
MELO3C022766.2 Cucumis melo HOM05D006875 ORTHO05D008416 2.0e-25 119.8 171 45.0
Thecc.03G314400 Theobroma cacao HOM05D006875 ORTHO05D008416 4.4e-25 118.6 172 43.0
TWI23G0606 Tripterygium wilfordii HOM05D006875 ORTHO05D008416 9.8e-25 117.5 180 44.4
Ciclev10002495m.g Citrus clementina HOM05D006875 ORTHO05D008416 1.7e-24 116.7 177 45.2
Atru.chr6.1576 Acer truncatum HOM05D006875 ORTHO05D008416 2.2e-24 116.3 181 42.5
Manes.17G011100 Manihot esculenta HOM05D006875 ORTHO05D008416 4.9e-24 115.2 183 43.7
Gohir.A08G152100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 6.3e-24 114.8 172 45.3
FAN08G3065 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.1e-23 114.0 170 47.6
FAN13G1224 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.1e-23 114.0 165 46.1
Os10g0579500 Oryza sativa ssp. japonica HOM05D006875 ORTHO05D008416 1.1e-23 114.0 95 64.2
Cpa.g.c33846 Carica papaya HOM05D006875 ORTHO05D008416 1.4e-23 113.6 142 49.3
FAN04G1681 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.8e-23 113.2 169 47.9
Hma1.2p1_0979F.1_g243510 Hydrangea macrophylla HOM05D006875 ORTHO05D008416 3.2e-23 112.5 176 44.9
FAN18G3512 Fragaria x ananassa HOM05D006875 ORTHO05D008416 4.1e-23 112.1 171 47.4
FvH4_5g23590 Fragaria vesca HOM05D006875 ORTHO05D008416 9.2e-23 110.9 171 46.8
FAN18G3946 Fragaria x ananassa HOM05D006875 ORTHO05D008416 9.2e-23 110.9 171 46.8
CANSAT21G2454 Cannabis sativa HOM05D006875 ORTHO05D008416 1.6e-22 110.2 170 42.9
vmacro14218 Vaccinium macrocarpon HOM05D006875 ORTHO05D008416 3.9e-21 105.5 253 37.2
Zm00001eb025290 Zea mays HOM05D006875 ORTHO05D008416 3.9e-21 105.5 98 58.2
Aqoxy3G02082 Aquilegia oxysepala HOM05D006875 ORTHO05D008416 5.0e-21 105.1 81 69.1
Sabra03G0067900 Salix brachista HOM05D006875 ORTHO05D008416 1.1e-20 104.0 94 58.5
COL.COLO4_16883 Corchorus olitorius HOM05D006875 ORTHO05D008416 1.9e-20 103.2 55 89.1
PSO063G1678 Papaver somniferum HOM05D006875 ORTHO05D008416 1.9e-20 103.2 100 59.0
Gorai.004G180500 Gossypium raimondii HOM05D006875 ORTHO05D008416 1.6e-19 100.1 166 41.6
PSO782G2435 Papaver somniferum HOM05D006875 ORTHO05D008416 1.6e-19 100.1 168 42.3
Psat2g139680 Pisum sativum HOM05D006875 ORTHO05D008416 4.0e-18 95.5 143 42.0
MD00G1000200 Malus domestica HOM05D006875 ORTHO05D008416 3.4e-17 92.4 182 39.6
HPP92_025490 Vanilla planifolia HOM05D006875 ORTHO05D008416 7.5e-17 91.3 72 68.1
Haze_08111 Corylus avellana HOM05D006875 ORTHO05D008416 1.3e-16 90.5 144 42.4
Haze_08105 Corylus avellana HOM05D006875 ORTHO05D008416 2.2e-16 89.7 67 62.7
Pp3c9_12060 Physcomitrium patens HOM05D006875 ORTHO05D008416 6.4e-16 88.2 67 62.7
Mapoly0025s0027 Marchantia polymorpha HOM05D006875 ORTHO05D008416 8.3e-16 87.8 67 62.7
Rhsim07G0136500 Rhododendron simsii HOM05D006875 ORTHO05D008416 1.2e-14 84.0 151 43.7
AagrBONN_evm.TU.Sc2ySwM_362.254 Anthoceros agrestis HOM05D006875 ORTHO05D008416 4.6e-14 82.0 72 59.7
ClCG07G002300 Citrullus lanatus HOM05D006875 ORTHO05D008416 4.6e-14 82.0 143 39.9
ECA233G1303 Erigeron canadensis HOM05D000321 ORTHO05D000204 3.3e-12 75.9 67 56.7
PGR031G1815 Punica granatum HOM05D006875 ORTHO05D008416 4.3e-12 75.5 138 42.0
ATR0829G201 Amborella trichopoda HOM05D006875 ORTHO05D008416 5.6e-12 75.1 93 48.4
RcHm_v2.0_Chr1g0382651 Rosa chinensis HOM05D006875 ORTHO05D008416 1.2e-11 73.9 44 77.3
QL12p000430 Quercus lobata HOM05D006875 ORTHO05D008416 2.8e-11 72.8 147 38.8
CDE11G0569 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 8.0e-11 71.2 100 45.0
SHI45156 Sapria himalayana HOM05D006875 ORTHO05D008416 1.1e-10 70.9 76 48.7
SEGI_22250 Sequoiadendron giganteum HOM05D006875 ORTHO05D008416 2.2e-08 63.2 73 47.9
Lsat_1_v5_gn_3_43041 Lactuca sativa HOM05D006875 ORTHO05D008416 3.7e-08 62.4 190 32.1
BcaB07g30436 Brassica carinata HOM05D000059 ORTHO05D091085 4.9e-08 62.0 150 37.3
MD06G1023100 Malus domestica HOM05D006875 ORTHO05D008416 1.2e-06 57.4 145 34.5


User provided reference genes

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