Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-136 490.0 279 100.0
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 2.4e-124 449.1 263 98.9
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 1.2e-118 430.3 289 88.6
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 6.0e-115 417.9 282 86.2
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 5.6e-113 411.4 278 87.8
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.8e-88 329.3 290 66.6
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 2.2e-80 303.1 280 68.9
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 4.4e-73 278.9 279 62.7
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 1.7e-69 266.9 280 60.0
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-69 266.9 280 60.0
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.1e-68 264.2 290 57.6
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 1.9e-68 263.5 280 59.6
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.9e-68 263.5 282 59.2
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.4e-66 257.3 280 60.0
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 1.6e-62 243.8 278 56.5
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.9e-60 236.9 289 54.0
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 3.2e-60 236.1 278 52.9
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 3.2e-60 236.1 276 54.0
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 5.5e-60 235.3 277 54.2
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 9.4e-60 234.6 278 52.5
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 2.3e-58 229.9 284 55.3
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 2.9e-53 213.0 285 54.4
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 3.6e-51 206.1 283 51.6
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 4.5e-46 189.1 276 47.5
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 1.2e-27 127.9 283 37.1
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 2.1e-27 127.1 284 37.0
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 2.8e-27 126.7 240 42.1
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 1.4e-26 124.4 303 36.0
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 2.3e-26 123.6 315 35.6
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 2.3e-26 123.6 304 36.2
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 4.0e-26 122.9 296 36.5
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 4.0e-26 122.9 296 36.5
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 6.8e-26 122.1 304 35.9
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 8.9e-26 121.7 287 40.4
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 2.0e-25 120.6 320 35.3
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 7.5e-25 118.6 294 36.1
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 2.2e-24 117.1 323 35.6
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 2.9e-24 116.7 309 33.3
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 8.3e-24 115.2 316 32.6
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.4e-23 114.4 315 34.9
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 2.4e-23 113.6 287 38.0
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 2.4e-23 113.6 287 38.0
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.4e-23 113.6 241 38.6
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 4.6e-22 109.4 266 35.7
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 6.0e-22 109.0 283 36.4
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 6.0e-22 109.0 283 36.4
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 3.0e-21 106.7 336 32.7
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.1e-20 104.8 297 33.0
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.8e-18 97.4 190 38.4
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 4.0e-18 96.3 184 37.5
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.0e-17 94.0 236 35.2
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 3.4e-17 93.2 187 39.6
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 7.5e-17 92.0 336 32.1
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 7.5e-17 92.0 311 31.8
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 7.5e-17 92.0 245 32.2
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.4e-15 87.8 192 36.5
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 1.4e-15 87.8 184 40.2
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 2.4e-15 87.0 188 39.4
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 2.7e-14 83.6 210 33.3
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 4.6e-14 82.8 204 35.8
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 6.0e-14 82.4 167 37.7
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 7.8e-14 82.0 169 40.2
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.0e-13 81.6 194 35.1
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 1.3e-13 81.3 208 33.7
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 2.3e-13 80.5 164 38.4
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 3.9e-13 79.7 188 34.6
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 5.1e-13 79.3 185 33.0
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 6.6e-13 79.0 182 37.9
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 6.6e-13 79.0 191 35.6
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 8.6e-13 78.6 167 37.7
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 8.6e-13 78.6 175 38.3
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 1.9e-12 77.4 164 37.2
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 1.9e-12 77.4 175 37.7
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 3.3e-12 76.6 65 61.5
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 3.3e-12 76.6 176 37.5
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 4.3e-12 76.3 173 37.0
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 4.3e-12 76.3 65 61.5
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 4.3e-12 76.3 65 61.5
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 4.3e-12 76.3 257 28.4
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 5.6e-12 75.9 187 35.8
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 5.6e-12 75.9 185 36.8
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 7.3e-12 75.5 185 37.3
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 9.5e-12 75.1 65 55.4
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 9.5e-12 75.1 204 33.3
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 9.5e-12 75.1 184 35.9
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.2e-11 74.7 181 35.9
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 2.8e-11 73.6 60 56.7
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 3.6e-11 73.2 243 30.0
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 3.6e-11 73.2 261 31.4
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 4.7e-11 72.8 165 36.4
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 4.7e-11 72.8 188 34.0
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 1.1e-10 71.6 187 33.2
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.8e-10 70.9 179 36.9
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.8e-10 70.9 176 34.1
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 1.8e-10 70.9 226 29.6
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 1.8e-10 70.9 167 38.3
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.4e-10 70.5 185 31.4
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 2.4e-10 70.5 61 59.0
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.1e-10 70.1 67 49.3
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 4.0e-10 69.7 181 34.3
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 5.2e-10 69.3 183 32.2
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 6.8e-10 68.9 206 31.6
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 6.8e-10 68.9 183 32.2
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 8.9e-10 68.6 184 31.5
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 8.9e-10 68.6 48 70.8
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.2e-09 68.2 183 33.3
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 1.2e-09 68.2 237 29.1
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 1.2e-09 68.2 175 36.0
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 1.5e-09 67.8 196 32.7
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.5e-09 67.8 208 30.3
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 2.0e-09 67.4 192 31.8
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 2.0e-09 67.4 239 28.9
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.4e-09 66.2 169 35.5
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 4.4e-09 66.2 183 31.7
C07p27070 Brassica napus HOM05D004305 ORTHO05D005159 5.8e-09 65.9 56 66.1
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 5.8e-09 65.9 184 31.5
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 7.6e-09 65.5 198 29.8
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 9.9e-09 65.1 179 34.1
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 9.9e-09 65.1 292 26.0
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.3e-08 64.7 182 32.4
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 1.7e-08 64.3 167 35.9
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 2.9e-08 63.5 178 33.7
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 4.9e-08 62.8 200 30.5
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 6.4e-08 62.4 189 33.9
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 6.4e-08 62.4 178 29.8
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 8.4e-08 62.0 188 28.2
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 1.1e-07 61.6 186 31.2
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 1.1e-07 61.6 184 29.3
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 1.9e-07 60.8 190 33.2
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.9e-07 60.8 190 31.1
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 2.4e-07 60.5 169 32.5
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 3.2e-07 60.1 58 56.9
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 4.1e-07 59.7 58 58.6
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 5.4e-07 59.3 87 42.5
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 1.2e-06 58.2 51 52.9
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 2.1e-06 57.4 182 29.1
HPP92_013922 Vanilla planifolia HOM05D004305 ORTHO05D005159 2.7e-06 57.0 168 36.3
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 3.5e-06 56.6 162 32.7
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 4.6e-06 56.2 217 30.4
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 7.8e-06 55.5 167 35.3


User provided reference genes

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