Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16594 Brassica carinata HOM05D007412 ORTHO05D009313 2.1e-126 455.7 223 100.0
C02p44160 Brassica napus HOM05D007412 ORTHO05D009313 2.1e-126 455.7 223 100.0
BolC2t10457H Brassica oleracea HOM05D007412 ORTHO05D009313 2.1e-126 455.7 223 100.0
BraA02t07833Z Brassica rapa HOM05D007412 ORTHO05D009313 1.1e-124 449.9 223 99.1
A02p27970 Brassica napus HOM05D007412 ORTHO05D009313 3.3e-124 448.4 223 98.7
BcaB07g30560 Brassica carinata HOM05D007412 ORTHO05D009313 1.1e-122 443.4 223 97.3
Sp2g08560 Schrenkiella parvula HOM05D007412 ORTHO05D009313 6.7e-117 424.1 223 92.8
CARHR179730 Cardamine hirsuta HOM05D007412 ORTHO05D009313 2.1e-110 402.5 223 89.7
Thhalv10003269m.g Eutrema salsugineum HOM05D007412 ORTHO05D009313 1.8e-109 399.4 223 89.2
Carub.0008s0489 Capsella rubella HOM05D007412 ORTHO05D009313 2.2e-104 382.5 218 86.7
AL37U10020 Arabidopsis lyrata HOM05D007412 ORTHO05D009313 3.8e-104 381.7 218 86.2
AL8G16510 Arabidopsis lyrata HOM05D007412 ORTHO05D009313 1.9e-103 379.4 218 86.2
THA.LOC104826067 Tarenaya hassleriana HOM05D007412 ORTHO05D009313 2.7e-102 375.6 223 79.8
AT5G43750 Arabidopsis thaliana HOM05D007412 ORTHO05D009313 3.6e-102 375.2 218 84.9
Cpa.g.sc58.20 Carica papaya HOM05D007412 ORTHO05D009313 1.3e-80 303.5 223 65.9
Eucgr.H00220 Eucalyptus grandis HOM05D007412 ORTHO05D009313 1.0e-77 293.9 217 65.4
Gorai.011G164700 Gossypium raimondii HOM05D007412 ORTHO05D009313 1.0e-77 293.9 222 63.1
Gohir.A10G118720 Gossypium hirsutum HOM05D007412 ORTHO05D009313 1.4e-77 293.5 222 63.1
COL.COLO4_15765 Corchorus olitorius HOM05D007412 ORTHO05D009313 1.8e-77 293.1 229 63.3
Gohir.D10G147600 Gossypium hirsutum HOM05D007412 ORTHO05D009313 6.8e-77 291.2 222 62.6
Duzib212G0542 Durio zibethinus HOM05D007412 ORTHO05D009313 1.5e-76 290.0 222 63.1
Thecc.04G243600 Theobroma cacao HOM05D007412 ORTHO05D009313 2.6e-76 289.3 222 63.1
Sed0016634 Sechium edule HOM05D007412 ORTHO05D009313 1.3e-75 287.0 228 61.8
CsaV3_3G012710 Cucumis sativus L. HOM05D007412 ORTHO05D009313 3.7e-75 285.4 224 62.1
Lj6g0001594 Lotus japonicus HOM05D007412 ORTHO05D009313 4.9e-75 285.0 219 62.6
FvH4_4g02220 Fragaria vesca HOM05D007412 ORTHO05D009313 8.3e-75 284.3 228 63.2
FAN12G2712 Fragaria x ananassa HOM05D007412 ORTHO05D009313 8.3e-75 284.3 228 63.2
FAN17G1959 Fragaria x ananassa HOM05D007412 ORTHO05D009313 4.1e-74 282.0 228 62.7
GSVIVG01018092001 Vitis vinifera HOM05D007412 ORTHO05D009313 2.7e-73 279.3 226 61.5
Manes.15G035500 Manihot esculenta HOM05D007412 ORTHO05D009313 4.5e-73 278.5 167 76.0
CANSAT78G1677 Cannabis sativa HOM05D007412 ORTHO05D009313 7.7e-73 277.7 217 60.4
Ca_12212_v3 Cicer arietinum L. HOM05D007412 ORTHO05D009313 7.7e-73 277.7 169 73.4
arahy.Tifrunner.gnm1.ann1.7ZK5QJ Arachis hypogaea HOM05D007412 ORTHO05D009313 1.7e-72 276.6 184 69.0
MELO3C006482.2 Cucumis melo HOM05D007412 ORTHO05D009313 2.9e-72 275.8 242 57.0
RcHm_v2.0_Chr4g0389531 Rosa chinensis HOM05D007412 ORTHO05D009313 2.9e-72 275.8 225 62.2
MD11G1069500 Malus domestica HOM05D007412 ORTHO05D009313 3.8e-72 275.4 223 62.8
Medtr5g042420 Medicago truncatula HOM05D007412 ORTHO05D009313 3.8e-72 275.4 169 72.8
Prupe.1G026900 Prunus persica HOM05D007412 ORTHO05D009313 3.8e-72 275.4 222 62.6
arahy.Tifrunner.gnm1.ann1.VMTG6G Arachis hypogaea HOM05D007412 ORTHO05D009313 5.6e-71 271.6 185 68.6
CiPaw.01G192500 Carya illinoinensis HOM05D007412 ORTHO05D009313 1.6e-70 270.0 167 73.7
Cc00_g20670 Coffea canephora HOM05D007412 ORTHO05D009313 2.8e-70 269.2 164 74.4
EL10Ac6g14279 Beta vulgaris HOM05D007412 ORTHO05D009313 8.0e-70 267.7 164 72.6
PGR142G1781 Punica granatum HOM05D007412 ORTHO05D009313 1.4e-69 266.9 223 60.5
Peaxi162Scf01416g00013 Petunia axillaris HOM05D007412 ORTHO05D009313 2.3e-69 266.2 219 60.7
Rhsim04G0195000 Rhododendron simsii HOM05D007412 ORTHO05D009313 4.0e-69 265.4 223 60.1
Ciclev10005847m.g Citrus clementina HOM05D007412 ORTHO05D009313 6.8e-69 264.6 218 57.3
Oeu022316.1 Olea europaea HOM05D007412 ORTHO05D009313 6.8e-69 264.6 223 60.1
SalBow2G0207 Salvia bowleyana HOM05D007412 ORTHO05D009313 9.8e-68 260.8 164 71.3
Potri.010G078800 Populus trichocarpa HOM05D007412 ORTHO05D009313 1.7e-67 260.0 219 55.7
Psat6g102120 Pisum sativum HOM05D007412 ORTHO05D009313 4.9e-67 258.5 172 68.6
Sopen09g032110 Solanum pennellii HOM05D007412 ORTHO05D009313 4.9e-67 258.5 219 57.5
Solyc09g083190.3 Solanum lycopersicum HOM05D007412 ORTHO05D009313 6.4e-67 258.1 219 57.5
Migut.G00414 Erythranthe guttata HOM05D007412 ORTHO05D009313 8.3e-67 257.7 218 57.8
VMungo0720G2555 Vigna mungo HOM05D007412 ORTHO05D009313 8.3e-67 257.7 164 68.9
QL06p015027 Quercus lobata HOM05D007412 ORTHO05D009313 1.1e-66 257.3 227 58.6
Lsat_1_v5_gn_3_124261 Lactuca sativa HOM05D007412 ORTHO05D009313 1.8e-66 256.5 232 56.5
Phvul.007G280100 Phaseolus vulgaris HOM05D007412 ORTHO05D009313 2.4e-66 256.1 164 68.9
CSS0011967 Camellia sinensis var. sinensis HOM05D007412 ORTHO05D009313 3.2e-66 255.8 224 57.6
CSS0029364 Camellia sinensis var. sinensis HOM05D007412 ORTHO05D009313 3.2e-66 255.8 224 57.6
MSTRG.4087 Avicennia marina HOM05D007412 ORTHO05D009313 4.1e-66 255.4 222 57.2
PGSC0003DMG400006085 Solanum tuberosum HOM05D007412 ORTHO05D009313 4.1e-66 255.4 218 57.8
Dinv14073 Davidia involucrata HOM05D007412 ORTHO05D009313 7.0e-66 254.6 222 60.4
Sabra10G0064500 Salix brachista HOM05D007412 ORTHO05D009313 7.0e-66 254.6 226 54.0
Lj6A653T76 Lonicera japonica HOM05D007412 ORTHO05D009313 2.0e-65 253.1 226 55.8
ECA240G0358 Erigeron canadensis HOM05D007412 ORTHO05D009313 2.7e-65 252.7 223 57.0
Glyma.10G000900 Glycine max HOM05D007412 ORTHO05D009313 2.7e-65 252.7 166 68.1
TAR362G0694 Trochodendron aralioides HOM05D007412 ORTHO05D009313 4.6e-65 251.9 217 57.6
Dinv44610 Davidia involucrata HOM05D007412 ORTHO05D009313 7.8e-65 251.1 166 71.1
PSO832G2518 Papaver somniferum HOM05D007412 ORTHO05D009313 3.9e-64 248.8 219 53.9
HanXRQChr03g0092521 Helianthus annuus HOM05D007412 ORTHO05D009313 6.6e-64 248.1 164 67.1
Lalb_Chr01g0020811 Lupinus albus HOM05D007412 ORTHO05D009313 6.6e-64 248.1 218 55.0
PSO210G6829 Papaver somniferum HOM05D007412 ORTHO05D009313 8.6e-64 247.7 219 53.9
vmacro08398 Vaccinium macrocarpon HOM05D007412 ORTHO05D009313 8.6e-64 247.7 217 58.1
Nn1g02544 Nelumbo nucifera HOM05D007412 ORTHO05D009313 1.5e-63 246.9 220 55.9
unitig_747.g21682 Utricularia gibba HOM05D002547 ORTHO05D009313 2.5e-63 246.1 174 66.7
Haze_11268 Corylus avellana HOM05D007412 ORTHO05D009313 1.0e-61 240.7 212 57.1
Aqoxy5G00362 Aquilegia oxysepala HOM05D007412 ORTHO05D009313 5.2e-61 238.4 216 54.6
Ah.03g138430 Amaranthus hybridus HOM05D007412 ORTHO05D009313 1.7e-59 233.4 146 72.6
FAN22G2201 Fragaria x ananassa HOM05D007412 ORTHO05D009313 7.8e-57 224.6 328 42.4
Os01g0929100 Oryza sativa ssp. japonica HOM05D007412 ORTHO05D009313 6.6e-56 221.5 166 60.2
ATR0665G092 Amborella trichopoda HOM05D007412 ORTHO05D009313 8.6e-56 221.1 175 55.4
Zm00001eb142440 Zea mays HOM05D007412 ORTHO05D009313 4.7e-54 215.3 179 58.7
DCAR_030707 Daucus carota HOM05D007412 ORTHO05D009313 3.1e-53 212.6 219 49.8
MBI11_g15916_MAGBIO Magnolia biondii HOM05D007412 ORTHO05D009313 3.1e-53 212.6 178 56.2
Glyma.19G263800 Glycine max HOM05D007412 ORTHO05D009313 5.2e-53 211.8 125 73.6
CDE06G0695 Ceratophyllum demersum HOM05D007412 ORTHO05D009313 1.7e-48 196.8 160 54.4
AUR62002782 Chenopodium quinoa HOM05D007412 ORTHO05D009313 1.7e-48 196.8 105 81.9
AUR62014099 Chenopodium quinoa HOM05D007412 ORTHO05D009313 5.1e-48 195.3 105 81.9
Nitab4.5_0010243g0010 Nicotiana tabacum HOM05D007412 ORTHO05D009313 1.1e-45 187.6 223 48.9
Aa31LG2G9890 Aethionema arabicum HOM05D007412 ORTHO05D009313 2.0e-44 183.3 124 77.4
Glyma.02G000300 Glycine max HOM05D007412 ORTHO05D009313 9.9e-44 181.0 110 72.7
Nitab4.5_0000525g0020 Nicotiana tabacum HOM05D007412 ORTHO05D009313 3.2e-42 176.0 119 71.4
Phvul.006G006300 Phaseolus vulgaris HOM05D007412 ORTHO05D009313 4.6e-41 172.2 163 52.8
SEGI_16394 Sequoiadendron giganteum HOM05D007412 ORTHO05D009313 6.9e-37 158.3 168 47.6
ClCG05G004710 Citrullus lanatus HOM05D000055 ORTHO05D000057 1.3e-35 154.1 219 42.9
TPR.G4008 Trifolium pratense HOM05D007412 ORTHO05D009313 2.1e-30 136.7 92 67.4
Hund25023 Selenicereus undatus HOM05D007412 ORTHO05D009313 7.1e-26 121.7 80 71.2
Actinidia40098 Actinidia chinensis HOM05D007412 ORTHO05D009313 3.0e-24 116.3 119 51.3
TWI73G0547 Tripterygium wilfordii HOM05D007412 ORTHO05D009313 3.9e-24 115.9 148 47.3
Pp3c21_10470 Physcomitrium patens HOM05D007412 ORTHO05D009313 1.5e-20 104.0 184 33.7
SMO137G0197 Selaginella moellendorffii HOM05D007412 ORTHO05D009313 2.0e-20 103.6 153 41.8
AagrBONN_evm.TU.Sc2ySwM_228.2018 Anthoceros agrestis HOM05D007412 ORTHO05D009313 3.5e-17 92.8 146 38.4
Mapoly0063s0063 Marchantia polymorpha HOM05D007412 ORTHO05D009313 9.0e-13 78.2 161 35.4
Eucgr.F02062 Eucalyptus grandis HOM05D007412 ORTHO05D009313 1.5e-12 77.4 41 78.0


User provided reference genes

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