Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 3.0e-169 598.6 342 100.0
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 3.0e-169 598.6 342 100.0
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 4.4e-168 594.7 342 99.1
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 8.6e-164 580.5 342 95.3
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 8.6e-164 580.5 342 95.3
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 6.4e-151 537.7 344 91.0
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 2.6e-136 489.2 344 84.0
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 2.2e-127 459.5 342 81.3
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 3.9e-124 448.7 348 79.6
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.5e-123 446.8 351 79.2
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 9.9e-120 434.1 352 75.0
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 2.2e-119 433.0 347 77.5
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 4.8e-74 282.3 355 56.1
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.2e-58 230.3 372 53.8
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 2.3e-44 183.7 308 44.8
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 8.9e-44 181.8 339 41.9
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 4.4e-43 179.5 322 44.1
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 4.4e-43 179.5 322 44.1
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 5.8e-43 179.1 309 44.7
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 2.9e-42 176.8 300 47.0
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.9e-42 176.8 306 48.0
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 6.4e-42 175.6 308 45.1
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 8.3e-42 175.3 344 41.9
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 1.9e-41 174.1 322 43.5
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 1.2e-40 171.4 363 42.7
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.2e-40 171.4 333 43.5
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 2.7e-40 170.2 337 41.5
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 2.7e-40 170.2 331 42.0
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 4.6e-40 169.5 334 43.7
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 4.6e-40 169.5 307 45.9
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.0e-39 168.3 335 44.8
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.3e-39 167.9 319 44.2
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.7e-39 167.5 316 42.1
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 2.3e-39 167.2 304 45.1
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 2.3e-39 167.2 331 42.0
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 3.0e-39 166.8 327 45.6
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 3.0e-39 166.8 325 44.0
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 3.0e-39 166.8 358 43.3
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 3.0e-39 166.8 334 43.4
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 6.6e-39 165.6 357 42.6
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 8.6e-39 165.2 302 42.4
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 3.3e-38 163.3 355 42.5
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 5.6e-38 162.5 331 40.8
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.6e-38 162.5 323 42.4
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.2e-37 161.4 310 42.9
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 2.1e-37 160.6 333 43.5
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.1e-37 160.6 319 42.3
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.6e-37 159.8 366 39.1
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.7e-37 159.5 319 42.0
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 6.2e-37 159.1 328 40.2
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 8.0e-37 158.7 327 41.3
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 1.1e-36 158.3 320 41.6
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 1.1e-36 158.3 272 44.5
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.4e-36 157.9 340 40.6
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.3e-36 157.1 346 40.5
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 3.1e-36 156.8 357 41.2
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 4.0e-36 156.4 309 43.4
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 4.0e-36 156.4 316 40.2
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 5.2e-36 156.0 272 43.4
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 6.8e-36 155.6 335 38.8
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 8.9e-36 155.2 321 45.5
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.5e-35 154.5 328 38.4
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.5e-35 154.5 332 42.8
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.5e-35 154.5 326 42.3
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 2.0e-35 154.1 345 36.8
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.0e-35 154.1 332 42.8
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 2.6e-35 153.7 326 39.6
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 2.6e-35 153.7 327 43.7
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 2.6e-35 153.7 343 38.8
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 3.4e-35 153.3 330 41.8
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 3.4e-35 153.3 323 41.8
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 3.4e-35 153.3 360 38.6
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 5.8e-35 152.5 334 41.0
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 5.8e-35 152.5 362 40.6
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 5.8e-35 152.5 324 41.0
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 9.8e-35 151.8 332 42.2
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 1.3e-34 151.4 297 42.1
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 2.2e-34 150.6 352 39.2
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 2.2e-34 150.6 346 40.8
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 3.7e-34 149.8 337 39.5
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 4.9e-34 149.4 330 40.0
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.2e-33 146.7 317 40.4
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 3.2e-33 146.7 359 37.0
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 3.2e-33 146.7 317 43.5
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 5.4e-33 146.0 326 39.3
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 7.0e-33 145.6 309 42.4
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.1e-32 144.1 266 41.0
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 3.5e-32 143.3 334 40.4
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 3.5e-32 143.3 308 41.2
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 3.9e-31 139.8 332 42.8
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 8.6e-31 138.7 337 42.7
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 3.3e-30 136.7 331 40.5
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 1.6e-29 134.4 376 37.2
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 1.6e-29 134.4 331 36.9
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 2.1e-29 134.0 364 36.8
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 2.1e-29 134.0 304 39.8
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 2.8e-29 133.7 256 39.5
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 4.7e-29 132.9 311 40.8
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 1.8e-28 131.0 266 40.2
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.8e-28 131.0 306 39.9
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 2.3e-28 130.6 256 38.7
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 6.8e-28 129.0 319 38.6
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 1.5e-27 127.9 297 38.4
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 2.0e-27 127.5 332 35.2
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.3e-26 124.8 348 37.6
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 1.7e-26 124.4 338 35.8
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 3.7e-26 123.2 393 34.4
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 3.7e-26 123.2 300 37.3
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 4.9e-26 122.9 285 36.5
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 4.9e-26 122.9 344 35.8
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 6.4e-26 122.5 344 35.8
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 1.1e-25 121.7 361 38.2
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 1.9e-25 120.9 327 37.9
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 3.2e-25 120.2 301 36.9
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 3.2e-25 120.2 309 37.5
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.1e-25 119.8 305 36.1
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 4.1e-25 119.8 308 36.7
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 7.1e-25 119.0 315 37.8
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 2.1e-24 117.5 327 36.7
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 2.7e-24 117.1 319 37.3
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 1.3e-23 114.8 354 38.4
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 6.6e-23 112.5 316 36.4
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 1.1e-22 111.7 324 38.3
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.5e-22 110.5 255 40.0
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 2.5e-22 110.5 307 39.7
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.2e-21 108.2 329 36.8
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 8.1e-21 105.5 310 39.4
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 1.8e-20 104.4 379 32.7
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 1.2e-19 101.7 182 44.0
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.5e-19 101.3 213 39.4
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 2.0e-19 100.9 294 35.4
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 4.4e-19 99.8 256 37.5
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 5.8e-19 99.4 312 37.2
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 2.9e-18 97.1 205 39.5
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 3.8e-18 96.7 303 33.0
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 4.2e-17 93.2 167 46.1
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.4e-17 92.8 255 39.6
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.6e-16 91.3 274 33.6
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.6e-16 91.3 274 33.6
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 4.6e-16 89.7 242 43.4
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 4.6e-16 89.7 143 49.0
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 6.0e-16 89.4 315 32.1
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 1.7e-15 87.8 96 50.0
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 5.1e-15 86.3 304 31.9
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 7.3e-14 82.4 235 34.0
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 1.2e-13 81.6 300 30.0
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.8e-13 80.5 335 32.5
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 2.8e-13 80.5 320 30.6
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 6.4e-10 69.3 359 28.4
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 1.1e-09 68.6 234 31.6
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.4e-09 67.4 316 29.4
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 3.2e-09 67.0 341 27.3
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.2e-08 65.1 135 39.3
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 2.1e-08 64.3 188 36.7
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 2.1e-08 64.3 128 41.4
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 2.7e-08 63.9 70 54.3
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 7.8e-08 62.4 273 31.1
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 1.0e-07 62.0 322 28.6
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 1.3e-07 61.6 290 26.9
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 3.0e-07 60.5 364 25.8
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 3.9e-07 60.1 300 26.0
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 3.9e-07 60.1 281 27.4
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 5.1e-07 59.7 295 28.5
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.6e-07 59.3 73 56.2
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 6.6e-07 59.3 351 25.9
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 8.7e-07 58.9 327 28.1
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 1.1e-06 58.5 285 27.4
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 1.1e-06 58.5 267 25.5
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 1.9e-06 57.8 285 26.0
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 1.9e-06 57.8 321 27.7
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 3.3e-06 57.0 356 27.0
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 4.3e-06 56.6 332 26.8
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 4.3e-06 56.6 363 25.3
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 5.6e-06 56.2 316 29.1
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 7.3e-06 55.8 271 25.8
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 7.3e-06 55.8 356 27.5
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 7.3e-06 55.8 85 48.2
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 7.3e-06 55.8 309 27.5
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 9.6e-06 55.5 343 25.1
Os08g0474500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 9.6e-06 55.5 59 55.9


User provided reference genes

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