Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16475 Brassica carinata HOM05D000003 ORTHO05D016704 7.8e-45 183.3 88 100.0
BcaC08g43188 Brassica carinata HOM05D000003 ORTHO05D016704 9.0e-25 116.7 88 67.0
BcaB06g26736 Brassica carinata HOM05D000003 ORTHO05D001498 2.6e-24 115.2 89 65.2
BcaC06g30852 Brassica carinata HOM05D000003 ORTHO05D015466 3.2e-22 108.2 87 62.1
BcaNung03952 Brassica carinata HOM05D000003 ORTHO05D016704 3.2e-22 108.2 87 62.1
BcaB02g10126 Brassica carinata HOM05D000003 ORTHO05D016704 5.5e-22 107.5 89 60.7
BcaB07g32628 Brassica carinata HOM05D000003 ORTHO05D001498 9.3e-22 106.7 89 60.7
BcaC02g12768 Brassica carinata HOM05D000003 ORTHO05D001498 1.2e-21 106.3 89 59.6
BolC7t43105H Brassica oleracea HOM05D000003 ORTHO05D001498 6.1e-21 104.0 89 60.7
BcaC04g24062 Brassica carinata HOM05D000003 ORTHO05D001498 1.8e-20 102.4 89 58.4
BcaC02g07192 Brassica carinata HOM05D000003 ORTHO05D001498 3.9e-20 101.3 88 60.2
BcaC08g46757 Brassica carinata HOM05D000003 ORTHO05D001498 1.5e-19 99.4 81 60.5
BolC1t01124H Brassica oleracea HOM05D000003 ORTHO05D001498 1.5e-19 99.4 85 60.0
C07p48220 Brassica napus HOM05D000003 ORTHO05D016704 3.3e-19 98.2 87 59.8
BcaB04g17607 Brassica carinata HOM05D000003 ORTHO05D001498 7.4e-19 97.1 85 57.6
BcaC03g18169 Brassica carinata HOM05D000003 ORTHO05D001498 1.4e-17 92.8 89 53.9
BcaC08g43351 Brassica carinata HOM05D000003 ORTHO05D001498 2.4e-17 92.0 89 53.9
BcaB02g07030 Brassica carinata HOM05D000003 ORTHO05D015466 3.1e-17 91.7 89 53.9
BcaB04g19028 Brassica carinata HOM05D000003 ORTHO05D000004 4.1e-17 91.3 89 52.8
BcaB01g02280 Brassica carinata HOM05D000003 ORTHO05D001498 6.9e-17 90.5 89 51.7
BcaB07g33879 Brassica carinata HOM05D000003 ORTHO05D015466 2.0e-16 89.0 89 50.6
BcaC08g45717 Brassica carinata HOM05D000003 ORTHO05D016704 3.4e-16 88.2 81 58.0
BcaB02g07356 Brassica carinata HOM05D000003 ORTHO05D001498 4.5e-16 87.8 88 50.0
BcaB04g18838 Brassica carinata HOM05D000003 ORTHO05D001498 4.5e-16 87.8 88 52.3
BcaB03g16045 Brassica carinata HOM05D000003 ORTHO05D001498 5.9e-16 87.4 89 49.4
BcaB04g17562 Brassica carinata HOM05D000003 ORTHO05D001498 5.9e-16 87.4 88 51.1
BcaB07g33494 Brassica carinata HOM05D000003 ORTHO05D001498 1.0e-15 86.7 89 48.3
BcaC01g06159 Brassica carinata HOM05D000003 ORTHO05D001498 1.3e-15 86.3 89 52.8
BcaNung05100 Brassica carinata HOM05D000003 ORTHO05D001498 1.7e-15 85.9 89 49.4
BcaC04g20486 Brassica carinata HOM05D000003 ORTHO05D001498 2.2e-15 85.5 89 56.2
BcaB07g32767 Brassica carinata HOM05D000003 ORTHO05D001498 2.9e-15 85.1 89 49.4
BcaC06g34691 Brassica carinata HOM05D000003 ORTHO05D001498 3.8e-15 84.7 89 50.6
BcaB02g10097 Brassica carinata HOM05D000003 ORTHO05D001498 5.0e-15 84.3 89 50.6
BcaB03g16821 Brassica carinata HOM05D000003 ORTHO05D001498 6.5e-15 84.0 85 50.6
BcaB04g16926 Brassica carinata HOM05D000003 ORTHO05D001498 8.5e-15 83.6 89 50.6
BcaC02g09541 Brassica carinata HOM05D000003 ORTHO05D001498 2.5e-14 82.0 89 49.4
BraA09t38728Z Brassica rapa HOM05D000003 ORTHO05D001498 5.5e-14 80.9 82 53.7
BolC5t32877H Brassica oleracea HOM05D000003 ORTHO05D001498 7.2e-14 80.5 89 48.3
BraA02t07610Z Brassica rapa HOM05D000003 ORTHO05D001498 4.6e-13 77.8 76 50.0
BcaNung01080 Brassica carinata HOM05D000003 ORTHO05D001498 7.9e-13 77.0 89 46.1
BolC8t51213H Brassica oleracea HOM05D000003 ORTHO05D016043 3.0e-12 75.1 82 46.3
BcaNung00269 Brassica carinata HOM05D000003 ORTHO05D001498 5.1e-12 74.3 88 46.6
Sp6g10470 Schrenkiella parvula HOM05D000003 ORTHO05D001498 2.0e-11 72.4 85 43.5
BcaC01g01226 Brassica carinata HOM05D000003 ORTHO05D001498 2.5e-11 72.0 82 45.1
BolC3t21277H Brassica oleracea HOM05D000003 ORTHO05D016043 2.5e-11 72.0 82 45.1
BcaC04g19633 Brassica carinata HOM05D000003 ORTHO05D001498 3.3e-11 71.6 84 45.2
BcaC06g34829 Brassica carinata HOM05D000003 ORTHO05D001498 3.3e-11 71.6 83 44.6
BolC7t42827H Brassica oleracea HOM05D000003 ORTHO05D016043 3.3e-11 71.6 83 44.6
BcaB05g22894 Brassica carinata HOM05D000003 ORTHO05D001498 4.3e-11 71.2 88 42.0
BcaC07g41849 Brassica carinata HOM05D000003 ORTHO05D027177 4.3e-11 71.2 85 42.4
BcaC05g25363 Brassica carinata HOM05D000003 ORTHO05D001498 7.4e-11 70.5 84 44.0
BolC7t44586H Brassica oleracea HOM05D000003 ORTHO05D016043 7.4e-11 70.5 82 43.9
Thhalv10009777m.g Eutrema salsugineum HOM05D000003 ORTHO05D001498 7.4e-11 70.5 84 46.4
BcaC05g29352 Brassica carinata HOM05D000003 ORTHO05D001498 1.3e-10 69.7 84 44.0
BolC3t16805H Brassica oleracea HOM05D000003 ORTHO05D016043 1.3e-10 69.7 83 42.2
BolC4t25304H Brassica oleracea HOM05D000003 ORTHO05D016704 2.2e-10 68.9 71 50.7
BcaC01g04069 Brassica carinata HOM05D000003 ORTHO05D016043 2.8e-10 68.6 83 43.4
BolC3t14078H Brassica oleracea HOM05D000003 ORTHO05D016704 3.7e-10 68.2 55 60.0
BraA01t02966Z Brassica rapa HOM05D000003 ORTHO05D014927 3.7e-10 68.2 81 44.4
BraA06t24122Z Brassica rapa HOM05D000003 ORTHO05D016043 4.8e-10 67.8 78 43.6
Thhalv10026817m.g Eutrema salsugineum HOM05D000003 ORTHO05D001498 4.8e-10 67.8 84 44.0
BcaC04g23534 Brassica carinata HOM05D000003 ORTHO05D000411 8.2e-10 67.0 83 42.2
BcaC06g35222 Brassica carinata HOM05D000003 ORTHO05D001498 8.2e-10 67.0 82 46.3
BcaC06g35337 Brassica carinata HOM05D000003 ORTHO05D000006 8.2e-10 67.0 77 44.2
BolC2t10194H Brassica oleracea HOM05D000003 ORTHO05D001498 8.2e-10 67.0 67 53.7
Sp7g03745 Schrenkiella parvula HOM05D000003 ORTHO05D001498 1.4e-09 66.2 84 41.7
BcaC04g23808 Brassica carinata HOM05D000003 ORTHO05D001498 2.4e-09 65.5 84 46.4
BcaC02g12838 Brassica carinata HOM05D000003 ORTHO05D001498 3.1e-09 65.1 80 46.2
BcaC09g47726 Brassica carinata HOM05D000003 ORTHO05D016043 5.3e-09 64.3 83 39.8
BcaC09g47764 Brassica carinata HOM05D000003 ORTHO05D016043 5.3e-09 64.3 83 39.8
BcaB08g35769 Brassica carinata HOM05D000003 ORTHO05D001498 6.9e-09 63.9 67 50.7
BcaB06g29528 Brassica carinata HOM05D000003 ORTHO05D001498 9.1e-09 63.5 84 44.0
BcaC05g28073 Brassica carinata HOM05D000003 ORTHO05D000411 1.2e-08 63.2 84 41.7
AL7G44730 Arabidopsis lyrata HOM05D000003 ORTHO05D001498 2.0e-08 62.4 83 41.0
BcaB04g17941 Brassica carinata HOM05D000003 ORTHO05D000004 2.6e-08 62.0 84 40.5
BcaC03g16617 Brassica carinata HOM05D000003 ORTHO05D000411 2.6e-08 62.0 85 41.2
BcaC06g34794 Brassica carinata HOM05D000003 ORTHO05D001498 2.6e-08 62.0 87 39.1
BcaC09g49254 Brassica carinata HOM05D000003 ORTHO05D001498 2.6e-08 62.0 86 39.5
BcaC09g51068 Brassica carinata HOM05D000003 ORTHO05D001498 2.6e-08 62.0 84 39.3
C07p24620 Brassica napus HOM05D000003 ORTHO05D001498 2.6e-08 62.0 87 39.1
BolC4t23645H Brassica oleracea HOM05D000003 ORTHO05D001498 2.6e-08 62.0 77 40.3
BolC7t42982H Brassica oleracea HOM05D000003 ORTHO05D001498 2.6e-08 62.0 87 39.1
BraA09t38311Z Brassica rapa HOM05D000003 ORTHO05D001498 2.6e-08 62.0 82 43.9
BcaB07g33516 Brassica carinata HOM05D000003 ORTHO05D000004 3.4e-08 61.6 88 44.3
BcaC03g13586 Brassica carinata HOM05D000003 ORTHO05D001498 5.9e-08 60.8 83 42.2
BcaC01g01503 Brassica carinata HOM05D000003 ORTHO05D001498 1.7e-07 59.3 84 42.9
BraA09t36313Z Brassica rapa HOM05D000003 ORTHO05D001498 1.7e-07 59.3 75 46.7
Carub.0007s3605 Capsella rubella HOM05D000003 ORTHO05D001498 1.7e-07 59.3 84 44.0
BolC2t08182H Brassica oleracea HOM05D000003 ORTHO05D016704 2.9e-07 58.5 67 49.3
BcaB05g24728 Brassica carinata HOM05D000003 ORTHO05D001498 3.8e-07 58.2 72 45.8
BcaC06g36425 Brassica carinata HOM05D000003 ORTHO05D001498 3.8e-07 58.2 78 44.9
BcaB05g22054 Brassica carinata HOM05D000003 ORTHO05D001498 5.0e-07 57.8 72 47.2
C07p15960 Brassica napus HOM05D009133 ORTHO05D016102 1.1e-06 56.6 84 34.5
C07p15980 Brassica napus HOM05D009133 ORTHO05D016102 1.1e-06 56.6 84 34.5
BcaC08g46350 Brassica carinata HOM05D000003 ORTHO05D001498 1.9e-06 55.8 84 39.3
C06p40810 Brassica napus HOM05D000003 ORTHO05D001498 1.9e-06 55.8 84 39.3
BolC6t39352H Brassica oleracea HOM05D000003 ORTHO05D001498 1.9e-06 55.8 84 39.3
BcaB03g15480 Brassica carinata HOM05D000003 ORTHO05D001498 3.2e-06 55.1 70 44.3
Sp6g06080 Schrenkiella parvula HOM05D000003 ORTHO05D001498 3.2e-06 55.1 84 44.0
BcaC09g50587 Brassica carinata HOM05D000003 ORTHO05D001498 4.2e-06 54.7 79 40.5
C04p37710 Brassica napus HOM05D000003 ORTHO05D014927 5.5e-06 54.3 61 41.0
BcaC04g19472 Brassica carinata HOM05D000003 ORTHO05D001498 7.2e-06 53.9 84 38.1
BcaC06g35891 Brassica carinata HOM05D000003 ORTHO05D001498 7.2e-06 53.9 79 40.5
BolC7t41443H Brassica oleracea HOM05D000003 ORTHO05D000004 7.2e-06 53.9 79 40.5
BraA06t25211Z Brassica rapa HOM05D000003 ORTHO05D001498 9.4e-06 53.5 79 40.5


User provided reference genes

Program Settings