Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16436 Brassica carinata HOM05D000603 ORTHO05D027317 5.9e-46 187.2 96 100.0
BolC2t10304H Brassica oleracea HOM05D000603 ORTHO05D027317 1.7e-45 185.7 96 99.0
BraA06t24006Z Brassica rapa HOM05D000603 ORTHO05D002642 2.0e-25 119.0 102 67.6
Sp1g10070 Schrenkiella parvula HOM05D000603 ORTHO05D002642 2.9e-24 115.2 98 67.3
BraA08t35263Z Brassica rapa HOM05D000603 ORTHO05D002642 2.4e-23 112.1 99 67.7
Thhalv10008605m.g Eutrema salsugineum HOM05D000603 ORTHO05D002642 5.4e-23 110.9 98 64.3
A08p33470 Brassica napus HOM05D000603 ORTHO05D002642 9.2e-23 110.2 99 66.7
AT1G11430 Arabidopsis thaliana HOM05D000603 ORTHO05D002642 6.0e-22 107.5 98 63.3
A06p08070 Brassica napus HOM05D000603 ORTHO05D002642 6.0e-22 107.5 96 64.6
C05p09650 Brassica napus HOM05D000603 ORTHO05D002642 6.0e-22 107.5 97 66.0
BolC5t29706H Brassica oleracea HOM05D000603 ORTHO05D002642 6.0e-22 107.5 97 66.0
AL1G22520 Arabidopsis lyrata HOM05D000603 ORTHO05D002642 1.0e-21 106.7 98 64.3
BcaB03g13256 Brassica carinata HOM05D000603 ORTHO05D002642 2.3e-21 105.5 96 65.6
BcaC05g25021 Brassica carinata HOM05D000603 ORTHO05D002642 2.3e-21 105.5 66 84.8
BcaC07g38665 Brassica carinata HOM05D000603 ORTHO05D002642 3.9e-21 104.8 99 64.6
C08p14490 Brassica napus HOM05D000603 ORTHO05D002642 3.9e-21 104.8 99 64.6
BolC8t49098H Brassica oleracea HOM05D000603 ORTHO05D002642 3.9e-21 104.8 99 64.6
CARHR011710 Cardamine hirsuta HOM05D000603 ORTHO05D002642 1.1e-20 103.2 96 66.7
Carub.0001s1105 Capsella rubella HOM05D000603 ORTHO05D002642 3.3e-20 101.7 98 61.2
Aa31LG1G3290 Aethionema arabicum HOM05D000603 ORTHO05D002642 5.2e-18 94.4 98 59.2
BcaC06g36122 Brassica carinata HOM05D037101 ORTHO05D032690 8.9e-18 93.6 58 79.3
BolC7t41180H Brassica oleracea HOM05D037101 ORTHO05D032690 8.9e-18 93.6 58 79.3
C07p07590 Brassica napus HOM05D037101 ORTHO05D032690 9.9e-17 90.1 58 77.6
Aa31LG2G9180 Aethionema arabicum HOM05D000603 ORTHO05D002642 3.5e-14 81.6 100 50.0
BcaC03g16504 Brassica carinata HOM05D052281 ORTHO05D027317 1.2e-11 73.2 54 75.9
THA.LOC104809532 Tarenaya hassleriana HOM05D000603 ORTHO05D002642 2.1e-11 72.4 86 50.0
Gorai.007G317600 Gossypium raimondii HOM05D000603 ORTHO05D002642 4.0e-10 68.2 98 43.9
Gohir.A08G020400 Gossypium hirsutum HOM05D000603 ORTHO05D002642 6.8e-10 67.4 98 45.9
Gorai.004G028600 Gossypium raimondii HOM05D000603 ORTHO05D002642 6.8e-10 67.4 98 45.9
Ciclev10009235m.g Citrus clementina HOM05D000603 ORTHO05D002642 1.2e-09 66.6 105 43.8
Gohir.D08G031000 Gossypium hirsutum HOM05D000603 ORTHO05D002642 2.0e-09 65.9 98 44.9
Prupe.4G197100 Prunus persica HOM05D000603 ORTHO05D002642 2.6e-09 65.5 90 47.8
C04p26200 Brassica napus HOM05D000603 ORTHO05D027317 3.4e-09 65.1 54 68.5
Sed0009050 Sechium edule HOM05D000603 ORTHO05D002642 4.4e-09 64.7 72 54.2
Gohir.A11G281800 Gossypium hirsutum HOM05D000603 ORTHO05D002642 5.8e-09 64.3 98 40.8
MD11G1230300 Malus domestica HOM05D000603 ORTHO05D002642 5.8e-09 64.3 94 47.9
Duzib213G0295 Durio zibethinus HOM05D000603 ORTHO05D002642 7.6e-09 63.9 101 44.6
MD03G1215700 Malus domestica HOM05D000603 ORTHO05D002642 1.3e-08 63.2 94 45.7
Gohir.D11G294400 Gossypium hirsutum HOM05D000603 ORTHO05D002642 1.7e-08 62.8 98 41.8
MELO3C018163.2 Cucumis melo HOM05D000603 ORTHO05D002642 2.9e-08 62.0 79 54.4
CsaV3_3G022620 Cucumis sativus L. HOM05D000603 ORTHO05D002642 2.9e-08 62.0 79 54.4
Thecc.07G058800 Theobroma cacao HOM05D000603 ORTHO05D002642 2.9e-08 62.0 97 43.3
Cpa.g.sc80.128 Carica papaya HOM05D000603 ORTHO05D002642 3.8e-08 61.6 97 44.3
RcHm_v2.0_Chr5g0036911 Rosa chinensis HOM05D000603 ORTHO05D002642 6.4e-08 60.8 80 48.8
Sed0016262 Sechium edule HOM05D000603 ORTHO05D002642 6.4e-08 60.8 72 54.2
Gohir.D05G363650 Gossypium hirsutum HOM05D000603 ORTHO05D002642 8.4e-08 60.5 63 54.0
Gorai.009G429000 Gossypium raimondii HOM05D000603 ORTHO05D002642 8.4e-08 60.5 63 54.0
Atru.chr2.3127 Acer truncatum HOM05D000603 ORTHO05D002642 1.1e-07 60.1 96 46.9
Duzib170G0341 Durio zibethinus HOM05D000603 ORTHO05D002642 1.1e-07 60.1 68 50.0
Eucgr.E03613 Eucalyptus grandis HOM05D000603 ORTHO05D002642 1.1e-07 60.1 77 49.4
Atru.chr10.2081 Acer truncatum HOM05D000603 ORTHO05D002642 1.4e-07 59.7 83 44.6
FAN11G0796 Fragaria x ananassa HOM05D000603 ORTHO05D002642 1.4e-07 59.7 91 46.2
FAN16G1010 Fragaria x ananassa HOM05D000603 ORTHO05D002642 1.4e-07 59.7 91 46.2
FAN21G1772 Fragaria x ananassa HOM05D000603 ORTHO05D002642 1.4e-07 59.7 91 46.2
Atru.chr2.3116 Acer truncatum HOM05D000603 ORTHO05D002642 1.9e-07 59.3 59 57.6
BcaC02g10648 Brassica carinata HOM05D000603 ORTHO05D091984 1.9e-07 59.3 35 80.0
ClCG05G015010 Citrullus lanatus HOM05D000603 ORTHO05D002642 1.9e-07 59.3 77 49.4
TWI38G0356 Tripterygium wilfordii HOM05D000603 ORTHO05D002642 1.9e-07 59.3 68 47.1
FvH4_3g21470 Fragaria vesca HOM05D000603 ORTHO05D002642 2.4e-07 58.9 80 48.8
Aqoxy1G03984 Aquilegia oxysepala HOM05D000603 ORTHO05D002642 4.2e-07 58.2 82 47.6
Peaxi162Scf00781g00011 Petunia axillaris HOM05D000603 ORTHO05D002642 4.2e-07 58.2 70 50.0
ATR0804G061 Amborella trichopoda HOM05D000603 ORTHO05D002642 7.1e-07 57.4 60 53.3
COL.COLO4_09530 Corchorus olitorius HOM05D000603 ORTHO05D002642 7.1e-07 57.4 84 45.2
unitig_52.g17547 Utricularia gibba HOM05D000603 ORTHO05D002642 7.1e-07 57.4 90 43.3
HanXRQChr16g0517081 Helianthus annuus HOM05D000603 ORTHO05D002642 9.3e-07 57.0 82 45.1
HPP92_005891 Vanilla planifolia HOM05D000603 ORTHO05D002642 9.3e-07 57.0 84 46.4
Lsat_1_v5_gn_4_58361 Lactuca sativa HOM05D000603 ORTHO05D002642 1.2e-06 56.6 80 45.0
CDE11G0854 Ceratophyllum demersum HOM05D000603 ORTHO05D002642 1.6e-06 56.2 76 44.7
FAN25G3185 Fragaria x ananassa HOM05D000603 ORTHO05D002642 1.6e-06 56.2 91 45.1
Medtr2g011000 Medicago truncatula HOM05D000603 ORTHO05D002642 2.1e-06 55.8 82 46.3
arahy.Tifrunner.gnm1.ann1.MDX7G2 Arachis hypogaea HOM05D000603 ORTHO05D002642 2.7e-06 55.5 81 45.7
Oeu016142.2 Olea europaea HOM05D000603 ORTHO05D002642 2.7e-06 55.5 66 48.5
TWI38G1620 Tripterygium wilfordii HOM05D000603 ORTHO05D002642 2.7e-06 55.5 104 40.4
MBI02_g37278_MAGBIO Magnolia biondii HOM05D000603 ORTHO05D002642 3.5e-06 55.1 58 53.4
Nitab4.5_0012549g0020 Nicotiana tabacum HOM05D000603 ORTHO05D002642 3.5e-06 55.1 71 46.5
Lalb_Chr15g0090171 Lupinus albus HOM05D000603 ORTHO05D002642 4.6e-06 54.7 69 44.9
PSO541G5515 Papaver somniferum HOM05D000603 ORTHO05D002642 4.6e-06 54.7 77 44.2
PSO675G6332 Papaver somniferum HOM05D000603 ORTHO05D002642 4.6e-06 54.7 77 44.2
QL03p073268 Quercus lobata HOM05D000603 ORTHO05D002642 4.6e-06 54.7 84 42.9
CSS0008579 Camellia sinensis var. sinensis HOM05D000603 ORTHO05D002642 6.0e-06 54.3 60 51.7
Dinv18959 Davidia involucrata HOM05D000603 ORTHO05D002642 6.0e-06 54.3 60 50.0
ECA234G1226 Erigeron canadensis HOM05D000603 ORTHO05D002642 6.0e-06 54.3 70 47.1
Gohir.A04G023599 Gossypium hirsutum HOM05D000603 ORTHO05D002642 6.0e-06 54.3 63 49.2
Peaxi162Scf00931g00036 Petunia axillaris HOM05D000603 ORTHO05D002642 6.0e-06 54.3 74 44.6
PGR042G2219 Punica granatum HOM05D000603 ORTHO05D002642 6.0e-06 54.3 60 51.7
TPR.G32668 Trifolium pratense HOM05D000603 ORTHO05D002642 7.8e-06 53.9 60 50.0


User provided reference genes

Program Settings