Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 1.4e-34 149.1 76 100.0
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 1.4e-34 149.1 76 100.0
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 1.4e-34 149.1 76 100.0
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 7.0e-34 146.7 76 97.4
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 7.0e-34 146.7 76 97.4
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 3.0e-32 141.4 76 93.4
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 3.0e-32 141.4 76 96.1
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 5.0e-32 140.6 76 93.4
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 5.0e-32 140.6 76 93.4
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 5.0e-32 140.6 76 93.4
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 8.6e-32 139.8 76 92.1
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-31 139.0 76 90.8
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-31 139.0 76 90.8
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 1.5e-31 139.0 76 90.8
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.9e-31 138.7 76 92.1
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 3.3e-31 137.9 76 90.8
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 3.3e-31 137.9 76 90.8
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 7.3e-31 136.7 76 89.5
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 7.3e-31 136.7 76 89.5
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 3.6e-30 134.4 76 88.2
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 6.2e-30 133.7 76 88.2
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 2.3e-29 131.7 76 86.8
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 5.2e-29 130.6 76 88.2
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 5.4e-18 94.0 76 65.8
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.1e-15 86.3 74 63.5
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.3e-15 84.7 76 59.2
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 4.3e-15 84.3 76 61.8
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.1e-14 82.0 74 62.2
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 6.2e-14 80.5 74 62.2
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 8.1e-14 80.1 87 54.0
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 8.1e-14 80.1 89 53.9
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 8.1e-14 80.1 76 55.3
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.4e-13 79.3 70 60.0
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.8e-13 79.0 76 56.6
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 8.9e-13 76.6 76 56.6
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 8.9e-13 76.6 76 53.9
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 2.6e-12 75.1 69 59.4
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 2.6e-12 75.1 68 60.3
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 3.4e-12 74.7 61 62.3
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 7.6e-12 73.6 66 62.1
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 9.9e-12 73.2 76 56.6
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 9.9e-12 73.2 62 61.3
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.3e-11 72.8 68 58.8
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.3e-11 72.8 70 57.1
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.3e-11 72.8 69 56.5
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 2.9e-11 71.6 77 55.8
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 3.8e-11 71.2 68 52.9
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.8e-11 71.2 71 50.7
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.8e-11 71.2 76 55.3
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 3.8e-11 71.2 75 52.0
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 6.4e-11 70.5 83 54.2
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 8.4e-11 70.1 68 55.9
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 1.1e-10 69.7 69 58.0
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.4e-10 69.3 70 52.9
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.4e-10 69.3 73 53.4
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 1.4e-10 69.3 76 55.3
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.9e-10 68.9 70 57.1
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.9e-10 68.9 70 57.1
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.4e-10 68.6 69 50.7
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 2.4e-10 68.6 81 51.9
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.2e-10 68.2 87 47.1
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.2e-10 68.2 87 47.1
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.2e-10 68.2 87 47.1
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 3.2e-10 68.2 70 54.3
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 5.4e-10 67.4 65 53.8
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 7.1e-10 67.0 66 54.5
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 7.1e-10 67.0 66 54.5
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 7.1e-10 67.0 68 54.4
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 7.1e-10 67.0 64 57.8
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 9.2e-10 66.6 61 52.5
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 9.2e-10 66.6 63 55.6
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 9.2e-10 66.6 75 49.3
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 9.2e-10 66.6 70 58.6
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 4.6e-09 64.3 74 52.7
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 7.8e-09 63.5 74 50.0
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.0e-08 63.2 64 56.2
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.3e-08 62.8 69 52.2
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.7e-08 62.4 64 54.7
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.7e-08 62.4 61 55.7
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.3e-08 62.0 69 47.8
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 2.3e-08 62.0 63 54.0
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 3.0e-08 61.6 60 53.3
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 3.0e-08 61.6 61 55.7
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.9e-08 61.2 64 54.7
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.9e-08 61.2 61 47.5
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.9e-08 61.2 57 54.4
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 1.1e-07 59.7 61 54.1
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.1e-07 59.7 66 51.5
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.5e-07 59.3 63 52.4
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.9e-07 58.9 68 47.1
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.9e-07 58.9 68 47.1
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 3.3e-07 58.2 63 50.8
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 4.3e-07 57.8 63 49.2
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 4.3e-07 57.8 61 55.7
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 5.6e-07 57.4 62 54.8
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 7.3e-07 57.0 63 49.2
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 7.3e-07 57.0 61 50.8
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 7.3e-07 57.0 61 50.8
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 7.3e-07 57.0 61 45.9
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 7.3e-07 57.0 73 45.2
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 7.3e-07 57.0 62 50.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 7.3e-07 57.0 63 54.0
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 7.3e-07 57.0 63 52.4
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 7.3e-07 57.0 62 50.0
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 1.2e-06 56.2 52 57.7
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.2e-06 56.2 61 54.1
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 1.2e-06 56.2 63 46.0
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 1.6e-06 55.8 64 48.4
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 2.1e-06 55.5 63 50.8
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 2.1e-06 55.5 75 45.3
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 2.1e-06 55.5 75 45.3
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 2.1e-06 55.5 63 49.2
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 2.8e-06 55.1 66 50.0
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 2.8e-06 55.1 77 46.8
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 2.8e-06 55.1 63 50.8
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 3.6e-06 54.7 64 50.0
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 3.6e-06 54.7 50 58.0
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 3.6e-06 54.7 62 51.6
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 4.7e-06 54.3 62 53.2
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 4.7e-06 54.3 62 53.2
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.7e-06 54.3 63 50.8
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 6.2e-06 53.9 62 46.8
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 6.2e-06 53.9 63 47.6
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 6.2e-06 53.9 63 47.6
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 6.2e-06 53.9 63 47.6
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 6.2e-06 53.9 79 43.0
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 6.2e-06 53.9 63 47.6
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 6.2e-06 53.9 63 52.4
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 8.1e-06 53.5 70 45.7


User provided reference genes

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