Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16235 Brassica carinata HOM05D004107 ORTHO05D004738 9.7e-104 380.2 195 100.0
Thhalv10028516m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 4.0e-65 251.9 162 80.9
AL6G48260 Arabidopsis lyrata HOM05D004107 ORTHO05D004738 5.2e-65 251.5 162 80.9
Carub.0006s3269 Capsella rubella HOM05D004107 ORTHO05D004738 5.2e-65 251.5 162 80.2
CARHR252770 Cardamine hirsuta HOM05D004107 ORTHO05D004738 8.9e-65 250.8 162 80.9
Sp6g04170 Schrenkiella parvula HOM05D004107 ORTHO05D004738 1.2e-64 250.4 162 80.2
AT4G04770 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 2.6e-64 249.2 162 80.2
Aa31LG9G9700 Aethionema arabicum HOM05D004107 ORTHO05D004738 9.8e-64 247.3 162 79.6
A09p26110 Brassica napus HOM05D004107 ORTHO05D004738 9.8e-64 247.3 162 79.6
BraA09t38178Z Brassica rapa HOM05D004107 ORTHO05D004738 9.8e-64 247.3 162 79.6
BcaC04g21323 Brassica carinata HOM05D004107 ORTHO05D004738 4.9e-63 245.0 162 79.0
C09p33150 Brassica napus HOM05D004107 ORTHO05D004738 4.9e-63 245.0 162 79.0
BolC9t56149H Brassica oleracea HOM05D004107 ORTHO05D004738 4.9e-63 245.0 162 79.0
BcaB01g01836 Brassica carinata HOM05D004107 ORTHO05D004738 6.4e-63 244.6 162 78.4
Ca_09479_v3 Cicer arietinum L. HOM05D004107 ORTHO05D004738 8.3e-63 244.2 162 78.4
Psat3g165680 Pisum sativum HOM05D004107 ORTHO05D004738 8.3e-63 244.2 162 78.4
Medtr7g030030 Medicago truncatula HOM05D004107 ORTHO05D004738 1.1e-62 243.8 162 78.4
Medtr7g038720 Medicago truncatula HOM05D004107 ORTHO05D004738 1.1e-62 243.8 162 78.4
Medtr8g019500 Medicago truncatula HOM05D004107 ORTHO05D004738 1.1e-62 243.8 162 78.4
THA.LOC104813092 Tarenaya hassleriana HOM05D004107 ORTHO05D004738 1.1e-62 243.8 162 77.2
MD05G1344000 Malus domestica HOM05D004107 ORTHO05D004738 1.8e-62 243.0 162 78.4
COL.COLO4_31757 Corchorus olitorius HOM05D004107 ORTHO05D004738 3.2e-62 242.3 162 76.5
Prupe.4G022500 Prunus persica HOM05D004107 ORTHO05D004738 4.1e-62 241.9 162 77.2
Sabra04G0009200 Salix brachista HOM05D004107 ORTHO05D004738 5.4e-62 241.5 162 76.5
Potri.004G016900 Populus trichocarpa HOM05D004107 ORTHO05D004738 7.0e-62 241.1 162 76.5
TPR.G39070 Trifolium pratense HOM05D004107 ORTHO05D004738 9.2e-62 240.7 162 77.8
Lalb_Chr23g0269471 Lupinus albus HOM05D004107 ORTHO05D004738 1.2e-61 240.4 162 76.5
ClCG03G004800 Citrullus lanatus HOM05D004107 ORTHO05D004738 1.6e-61 240.0 162 75.9
MELO3C002463.2 Cucumis melo HOM05D004107 ORTHO05D004738 1.6e-61 240.0 162 75.9
CsaV3_1G010840 Cucumis sativus L. HOM05D004107 ORTHO05D004738 1.6e-61 240.0 162 75.9
Gohir.A05G169500 Gossypium hirsutum HOM05D004107 ORTHO05D004738 1.6e-61 240.0 162 75.9
Gorai.009G177900 Gossypium raimondii HOM05D004107 ORTHO05D004738 1.6e-61 240.0 162 75.9
Lalb_Chr11g0064371 Lupinus albus HOM05D004107 ORTHO05D004738 1.6e-61 240.0 162 75.3
Sed0011656 Sechium edule HOM05D004107 ORTHO05D004738 1.6e-61 240.0 162 75.9
Manes.16G008200 Manihot esculenta HOM05D004107 ORTHO05D004738 2.0e-61 239.6 162 75.9
PGR042G1667 Punica granatum HOM05D004107 ORTHO05D004738 2.0e-61 239.6 162 76.5
Eucgr.E04076 Eucalyptus grandis HOM05D004107 ORTHO05D004738 3.5e-61 238.8 162 76.5
Atru.chr10.2206 Acer truncatum HOM05D004107 ORTHO05D004738 4.6e-61 238.4 162 76.5
arahy.Tifrunner.gnm1.ann1.1W8BNJ Arachis hypogaea HOM05D004107 ORTHO05D004738 4.6e-61 238.4 162 75.9
arahy.Tifrunner.gnm1.ann1.G9MXMR Arachis hypogaea HOM05D004107 ORTHO05D004738 4.6e-61 238.4 162 75.9
CARHR107510 Cardamine hirsuta HOM05D004107 ORTHO05D004738 4.6e-61 238.4 163 76.7
Haze_14623 Corylus avellana HOM05D004107 ORTHO05D004738 4.6e-61 238.4 162 75.3
Dinv13883 Davidia involucrata HOM05D004107 ORTHO05D004738 4.6e-61 238.4 162 75.3
HanXRQChr01g0004241 Helianthus annuus HOM05D004107 ORTHO05D004738 4.6e-61 238.4 161 76.4
ECA248G0760 Erigeron canadensis HOM05D004107 ORTHO05D004738 5.9e-61 238.0 161 77.0
Nitab4.5_0003343g0020 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.9e-61 238.0 161 77.0
FvH4_3g02300 Fragaria vesca HOM05D004107 ORTHO05D004738 7.8e-61 237.7 162 75.9
FAN21G0289 Fragaria x ananassa HOM05D004107 ORTHO05D004738 7.8e-61 237.7 162 75.9
FAN25G2291 Fragaria x ananassa HOM05D004107 ORTHO05D004738 7.8e-61 237.7 162 75.9
Sed0003265 Sechium edule HOM05D004107 ORTHO05D004738 7.8e-61 237.7 162 75.3
vmacro10117 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 7.8e-61 237.7 161 75.8
VMungo1215G1998 Vigna mungo HOM05D004107 ORTHO05D004738 7.8e-61 237.7 162 75.9
GSVIVG01012742001 Vitis vinifera HOM05D004107 ORTHO05D004738 7.8e-61 237.7 162 75.3
Phvul.003G172700 Phaseolus vulgaris HOM05D004107 ORTHO05D004738 1.0e-60 237.3 162 75.3
Rhsim02G0109300 Rhododendron simsii HOM05D004107 ORTHO05D004738 1.0e-60 237.3 161 75.2
Rhsim02G0109900 Rhododendron simsii HOM05D004107 ORTHO05D004738 1.0e-60 237.3 161 75.2
Thecc.06G087700 Theobroma cacao HOM05D004107 ORTHO05D004738 1.0e-60 237.3 162 75.3
Duzib192G0236 Durio zibethinus HOM05D004107 ORTHO05D004738 1.3e-60 236.9 162 75.3
Nitab4.5_0003254g0100 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.3e-60 236.9 161 75.8
Nitab4.5_0006137g0030 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.3e-60 236.9 161 75.8
Nitab4.5_0009691g0010 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.3e-60 236.9 161 76.4
Peaxi162Scf00079g01510 Petunia axillaris HOM05D004107 ORTHO05D004738 1.3e-60 236.9 161 75.8
Peaxi162Scf00853g00314 Petunia axillaris HOM05D004107 ORTHO05D004738 1.3e-60 236.9 161 75.8
BolC2t10037H Brassica oleracea HOM05D004107 ORTHO05D004738 1.7e-60 236.5 120 97.5
Cfa007474 Carpinus fangiana HOM05D004107 ORTHO05D004738 1.7e-60 236.5 162 74.7
Migut.M01308 Erythranthe guttata HOM05D004107 ORTHO05D004738 1.7e-60 236.5 161 75.8
Glyma.13G163700 Glycine max HOM05D004107 ORTHO05D004738 1.7e-60 236.5 162 75.3
Solyc03g031700.4 Solanum lycopersicum HOM05D004107 ORTHO05D004738 1.7e-60 236.5 161 75.8
Sopen03g005570 Solanum pennellii HOM05D004107 ORTHO05D004738 1.7e-60 236.5 161 75.8
TWI38G1857 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 1.7e-60 236.5 162 75.3
Actinidia11849 Actinidia chinensis HOM05D004107 ORTHO05D004738 2.3e-60 236.1 161 74.5
CiPaw.03G033800 Carya illinoinensis HOM05D004107 ORTHO05D004738 2.3e-60 236.1 162 75.3
Cc01_g06630 Coffea canephora HOM05D004107 ORTHO05D004738 2.3e-60 236.1 161 75.2
PGSC0003DMG400016484 Solanum tuberosum HOM05D004107 ORTHO05D004738 2.3e-60 236.1 161 75.8
HanXRQChr11g0323581 Helianthus annuus HOM05D004107 ORTHO05D004738 3.0e-60 235.7 161 74.5
Oeu002728.1 Olea europaea HOM05D004107 ORTHO05D004738 3.0e-60 235.7 161 75.2
QL02p078433 Quercus lobata HOM05D004107 ORTHO05D004738 3.0e-60 235.7 162 74.7
RcHm_v2.0_Chr5g0003451 Rosa chinensis HOM05D004107 ORTHO05D004738 3.0e-60 235.7 162 75.3
Solyc02g080440.3 Solanum lycopersicum HOM05D004107 ORTHO05D004738 3.0e-60 235.7 161 75.2
Sopen02g025130 Solanum pennellii HOM05D004107 ORTHO05D004738 3.0e-60 235.7 161 75.2
Glyma.17G107200 Glycine max HOM05D004107 ORTHO05D004738 3.9e-60 235.3 162 74.7
Gohir.D05G172700 Gossypium hirsutum HOM05D004107 ORTHO05D004738 3.9e-60 235.3 162 74.7
Lj5g0005763 Lotus japonicus HOM05D004107 ORTHO05D004738 3.9e-60 235.3 162 75.3
CSS0040304 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 5.0e-60 235.0 162 74.7
Oeu033892.1 Olea europaea HOM05D004107 ORTHO05D004738 5.0e-60 235.0 161 75.2
PGSC0003DMG400005080 Solanum tuberosum HOM05D004107 ORTHO05D004738 5.0e-60 235.0 161 75.8
Thecc.06G219000 Theobroma cacao HOM05D004107 ORTHO05D004738 5.0e-60 235.0 162 74.7
CSS0041721 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 6.6e-60 234.6 161 75.2
CiPaw.04G022400 Carya illinoinensis HOM05D004107 ORTHO05D004738 6.6e-60 234.6 162 74.7
CAN.G569.15 Capsicum annuum HOM05D004107 ORTHO05D004738 8.6e-60 234.2 161 75.2
DCAR_008142 Daucus carota HOM05D004107 ORTHO05D004738 8.6e-60 234.2 161 75.2
Hma1.2p1_0558F.1_g178480 Hydrangea macrophylla HOM05D004107 ORTHO05D004738 8.6e-60 234.2 162 74.7
TWI63G0549 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 8.6e-60 234.2 162 74.1
AUR62021968 Chenopodium quinoa HOM05D004107 ORTHO05D004738 1.9e-59 233.0 162 75.9
Ciclev10014785m.g Citrus clementina HOM05D004107 ORTHO05D004738 3.3e-59 232.3 162 73.5
MSTRG.15982 Avicennia marina HOM05D004107 ORTHO05D004738 7.3e-59 231.1 161 73.9
TAR629G1093 Trochodendron aralioides HOM05D004107 ORTHO05D004738 7.3e-59 231.1 162 73.5
Lsat_1_v5_gn_1_128700 Lactuca sativa HOM05D004107 ORTHO05D004738 9.5e-59 230.7 161 74.5
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 1.2e-58 230.3 161 74.5
CANSAT56G3413 Cannabis sativa HOM05D004107 ORTHO05D004738 1.6e-58 229.9 162 72.8
AUR62012688 Chenopodium quinoa HOM05D004107 ORTHO05D004738 2.8e-58 229.2 162 74.7
Cpa.g.sc198.44 Carica papaya HOM05D004107 ORTHO05D004738 3.6e-58 228.8 162 73.5
Ah.07g208390 Amaranthus hybridus HOM05D004107 ORTHO05D004738 4.7e-58 228.4 162 73.5
EL10Ac3g05771 Beta vulgaris HOM05D004107 ORTHO05D004738 4.7e-58 228.4 162 73.5
C02p40090 Brassica napus HOM05D004107 ORTHO05D004738 6.2e-58 228.0 120 95.0
Aqoxy1G02185 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.8e-57 226.5 161 73.3
MBI02_g22110_MAGBIO Magnolia biondii HOM05D004107 ORTHO05D004738 2.3e-57 226.1 162 71.6
MSTRG.7222 Avicennia marina HOM05D004107 ORTHO05D004738 5.2e-57 224.9 161 72.0
Hund21401 Selenicereus undatus HOM05D004107 ORTHO05D004738 5.2e-57 224.9 162 72.8
SEGI_39818 Sequoiadendron giganteum HOM05D004107 ORTHO05D004738 2.6e-56 222.6 162 69.8
Sc05g0009110 Simmondsia chinensis HOM05D004107 ORTHO05D004738 1.7e-55 219.9 162 71.0
CDE07G0300 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 2.2e-55 219.5 162 69.8
vmacro15813 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 2.2e-55 219.5 148 76.4
PSO675G6282 Papaver somniferum HOM05D004107 ORTHO05D004738 2.9e-55 219.2 162 69.8
PSO541G4368 Papaver somniferum HOM05D004107 ORTHO05D004738 3.7e-55 218.8 162 69.1
Lj1A1229G40 Lonicera japonica HOM05D004107 ORTHO05D004738 6.4e-55 218.0 162 69.8
CDE06G1524 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 1.1e-54 217.2 162 69.1
Mapoly0043s0049 Marchantia polymorpha HOM05D004107 ORTHO05D004738 1.1e-54 217.2 162 71.0
HPP92_023742 Vanilla planifolia HOM05D004107 ORTHO05D004738 1.1e-54 217.2 161 70.2
Duzib211G0221 Durio zibethinus HOM05D004107 ORTHO05D004738 1.4e-54 216.9 162 69.1
CBR_g37549 Chara braunii HOM05D004107 ORTHO05D004738 3.2e-54 215.7 162 70.4
AagrBONN_evm.TU.Sc2ySwM_344.3731 Anthoceros agrestis HOM05D004107 ORTHO05D004738 4.1e-54 215.3 162 69.8
Aqoxy1G02187 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 7.0e-54 214.5 161 70.8
Pp3c2_37190 Physcomitrium patens HOM05D004107 ORTHO05D004738 1.6e-53 213.4 160 69.4
SMO118G0281 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 2.0e-53 213.0 161 67.7
Pp3c1_9330 Physcomitrium patens HOM05D004107 ORTHO05D004738 2.7e-53 212.6 160 69.4
ATR0772G029 Amborella trichopoda HOM05D004107 ORTHO05D004738 3.5e-53 212.2 162 67.9
Cre15.g643600 Chlamydomonas reinhardtii HOM05D004107 ORTHO05D004738 7.8e-53 211.1 162 68.5
Os01g0830000 Oryza sativa ssp. japonica HOM05D004107 ORTHO05D004738 1.0e-52 210.7 162 69.1
Rhsim04G0103400 Rhododendron simsii HOM05D004107 ORTHO05D004738 5.0e-52 208.4 162 67.9
EL10Ac8g18634 Beta vulgaris HOM05D004107 ORTHO05D004738 6.6e-52 208.0 163 65.6
MCO07G339 Micromonas commoda HOM05D004107 ORTHO05D004738 4.3e-51 205.3 162 66.7
PRCOL_00000395 Prasinoderma coloniale HOM05D004107 ORTHO05D004738 8.1e-50 201.1 162 64.8
Hund23481 Selenicereus undatus HOM05D004107 ORTHO05D004738 1.8e-49 199.9 162 68.5
VMungo0251G0494 Vigna mungo HOM05D004107 ORTHO05D004738 8.9e-49 197.6 150 70.7
BraA02t07513Z Brassica rapa HOM05D004107 ORTHO05D004738 1.7e-47 193.4 103 94.2
SMO347G0487 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 2.1e-45 186.4 186 54.8
PSO339G3293 Papaver somniferum HOM05D004107 ORTHO05D004738 4.7e-42 175.3 156 60.3
vmacro09068 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 8.9e-41 171.0 125 69.6
Haze_26807 Corylus avellana HOM05D004107 ORTHO05D004738 1.2e-40 170.6 161 57.1
TAR627G0615 Trochodendron aralioides HOM05D004107 ORTHO05D004738 2.9e-39 166.0 162 57.4
Thhalv10022515m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 2.3e-36 156.4 141 60.3
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 6.6e-36 154.8 162 51.2
Pp3c25_3020 Physcomitrium patens HOM05D004107 ORTHO05D004738 4.9e-23 112.1 162 38.3
Pp3c4_7780 Physcomitrium patens HOM05D004107 ORTHO05D004738 3.9e-20 102.4 86 60.5
unitig_748.g7575 Utricularia gibba HOM05D004107 ORTHO05D004738 1.5e-19 100.5 63 79.4
RcHm_v2.0_Chr5g0003431 Rosa chinensis HOM05D004107 ORTHO05D004738 1.5e-16 90.5 64 67.2
AT5G44316 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 7.6e-16 88.2 150 41.3
C04p43300 Brassica napus HOM05D000171 ORTHO05D000101 1.3e-15 87.4 44 97.7
SHI00520 Sapria himalayana HOM05D004107 ORTHO05D004738 5.5e-14 82.0 150 38.7
VMungo1383G1914 Vigna mungo HOM05D004107 ORTHO05D004738 2.2e-07 60.1 40 72.5


User provided reference genes

Program Settings