Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16191 Brassica carinata HOM05D003286 ORTHO05D002463 5.6e-41 170.6 94 100.0
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 5.1e-34 147.5 107 83.2
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.7e-26 120.6 87 71.3
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 1.5e-25 119.4 86 70.9
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.4e-25 117.1 86 69.8
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 9.6e-25 116.7 86 67.4
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.3e-24 116.3 86 69.8
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 3.1e-23 111.7 86 66.3
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 4.0e-23 111.3 86 64.0
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 5.3e-23 110.9 86 66.3
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 2.6e-22 108.6 86 66.3
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 2.6e-22 108.6 86 66.3
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 2.6e-22 108.6 86 66.3
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 2.6e-22 108.6 86 66.3
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 2.6e-22 108.6 86 66.3
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 2.6e-22 108.6 86 62.8
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 3.4e-22 108.2 86 65.1
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 3.4e-22 108.2 86 65.1
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 5.8e-22 107.5 86 65.1
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 5.8e-22 107.5 86 65.1
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 5.8e-22 107.5 86 65.1
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 1.0e-21 106.7 86 60.5
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.3e-21 106.3 86 65.1
CARHR252290 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.3e-21 106.3 68 73.5
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 2.9e-21 105.1 86 64.0
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 3.8e-21 104.8 86 59.3
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 1.1e-20 103.2 87 57.5
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.1e-20 103.2 86 66.3
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 1.1e-20 103.2 86 59.3
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 1.1e-20 103.2 86 59.3
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 2.5e-20 102.1 86 60.5
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 3.2e-20 101.7 87 58.6
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 4.2e-20 101.3 86 58.1
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 5.5e-20 100.9 87 57.5
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 5.5e-20 100.9 87 56.3
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 9.3e-20 100.1 87 57.5
CSS0013854 Camellia sinensis var. sinensis HOM05D003286 ORTHO05D002463 1.2e-19 99.8 86 58.1
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 2.1e-19 99.0 74 62.2
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 2.1e-19 99.0 85 56.5
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 2.1e-19 99.0 87 56.3
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 2.1e-19 99.0 84 59.5
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 2.7e-19 98.6 74 62.2
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 2.7e-19 98.6 86 57.0
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 2.7e-19 98.6 87 57.5
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 3.5e-19 98.2 86 53.5
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 3.5e-19 98.2 85 57.6
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 3.5e-19 98.2 87 54.0
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 3.5e-19 98.2 87 54.0
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 3.5e-19 98.2 85 57.6
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 4.6e-19 97.8 87 56.3
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 4.6e-19 97.8 87 54.0
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 6.0e-19 97.4 86 55.8
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 6.0e-19 97.4 86 57.0
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 1.0e-18 96.7 87 55.2
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 1.0e-18 96.7 87 55.2
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 1.3e-18 96.3 85 55.3
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 1.8e-18 95.9 82 58.5
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 1.8e-18 95.9 104 50.0
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 3.0e-18 95.1 89 55.1
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 3.0e-18 95.1 87 55.2
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 3.9e-18 94.7 81 59.3
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 6.7e-18 94.0 87 54.0
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 6.7e-18 94.0 74 59.5
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 1.1e-17 93.2 87 55.2
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 1.5e-17 92.8 87 50.6
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 1.5e-17 92.8 86 53.5
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 2.5e-17 92.0 82 58.5
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 2.5e-17 92.0 87 49.4
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 2.5e-17 92.0 87 52.9
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 3.3e-17 91.7 85 54.1
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 3.3e-17 91.7 76 56.6
Cfa000701 Carpinus fangiana HOM05D003286 ORTHO05D002463 4.3e-17 91.3 81 55.6
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 4.3e-17 91.3 82 53.7
AUR62015794 Chenopodium quinoa HOM05D003286 ORTHO05D002463 1.3e-16 89.7 85 54.1
AUR62020422 Chenopodium quinoa HOM05D003286 ORTHO05D002463 2.2e-16 89.0 86 53.5
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 2.2e-16 89.0 80 55.0
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 3.7e-16 88.2 101 43.6
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 4.8e-16 87.8 101 43.6
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 4.8e-16 87.8 87 52.9
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 6.3e-16 87.4 89 58.4
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 6.3e-16 87.4 87 49.4
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 8.2e-16 87.0 86 51.2
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 1.4e-15 86.3 83 54.2
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 2.4e-15 85.5 81 55.6
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 3.1e-15 85.1 76 56.6
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 3.1e-15 85.1 76 56.6
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 6.9e-15 84.0 83 57.8
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 1.5e-14 82.8 87 50.6
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 2.6e-14 82.0 87 50.6
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 2.6e-14 82.0 82 50.0
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 3.4e-14 81.6 85 47.1
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 4.5e-14 81.3 87 47.1
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 4.5e-14 81.3 87 51.7
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 5.9e-14 80.9 85 48.2
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 1.0e-13 80.1 100 43.0
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 1.7e-13 79.3 83 48.2
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 2.2e-13 79.0 74 50.0
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 2.9e-13 78.6 87 46.0
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 2.9e-13 78.6 72 52.8
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 2.9e-13 78.6 74 50.0
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 2.9e-13 78.6 74 50.0
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 6.5e-13 77.4 84 48.8
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 6.5e-13 77.4 87 48.3
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 5.5e-12 74.3 87 46.0
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 4.6e-11 71.2 84 46.4
MD05G1341300 Malus domestica HOM05D003286 ORTHO05D002463 7.9e-11 70.5 50 60.0
Sp6g03000 Schrenkiella parvula HOM05D011698 ORTHO05D013798 7.9e-11 70.5 69 47.8
Sc07g0002820 Simmondsia chinensis HOM05D003286 ORTHO05D002463 1.0e-10 70.1 85 42.4
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 1.4e-10 69.7 84 45.2
A09p02280 Brassica napus HOM05D003286 ORTHO05D021628 2.3e-10 68.9 69 46.4
BraA09t35877Z Brassica rapa HOM05D003286 ORTHO05D021628 2.3e-10 68.9 69 46.4
BolC9t53169H Brassica oleracea HOM05D003286 ORTHO05D021628 8.8e-10 67.0 69 44.9
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.1e-09 66.6 73 50.7
C09p02380 Brassica napus HOM05D003286 ORTHO05D021628 1.5e-09 66.2 69 44.9
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 2.0e-09 65.9 70 44.3
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 2.5e-09 65.5 70 47.1
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 4.3e-09 64.7 77 44.2
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 7.4e-09 63.9 63 52.4
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 9.7e-09 63.5 71 42.3
BolC9t53171H Brassica oleracea HOM05D003286 ORTHO05D020140 1.3e-08 63.2 68 45.6
Eucgr.D01290 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.3e-08 63.2 72 43.1
C09p02390 Brassica napus HOM05D003286 ORTHO05D020140 1.7e-08 62.8 52 53.8
BolC9t53170H Brassica oleracea HOM05D003286 ORTHO05D020140 1.7e-08 62.8 52 53.8
Zm00001eb225210 Zea mays HOM05D003286 ORTHO05D002463 1.7e-08 62.8 72 44.4
C09p02400 Brassica napus HOM05D003286 ORTHO05D020140 3.7e-08 61.6 69 43.5
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 3.7e-08 61.6 45 53.3
A09p02290 Brassica napus HOM05D003286 ORTHO05D020140 1.1e-07 60.1 52 51.9
BraA09t35878Z Brassica rapa HOM05D003286 ORTHO05D020140 1.1e-07 60.1 52 51.9
CDE04G2878 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 1.8e-07 59.3 78 39.7
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 4.1e-07 58.2 71 40.8
Zm00001eb101690 Zea mays HOM05D003286 ORTHO05D002463 4.1e-07 58.2 43 62.8
Nn1g07029 Nelumbo nucifera HOM05D007466 ORTHO05D002463 6.9e-07 57.4 40 60.0
PSO541G5792 Papaver somniferum HOM05D007466 ORTHO05D002463 9.1e-07 57.0 40 60.0
PSO675G1565 Papaver somniferum HOM05D007466 ORTHO05D002463 9.1e-07 57.0 40 60.0
Os09g0481650 Oryza sativa ssp. japonica HOM05D003286 ORTHO05D002463 1.2e-06 56.6 60 45.0
Potri.017G037600 Populus trichocarpa HOM05D007466 ORTHO05D002463 1.5e-06 56.2 40 57.5
BcaC01g06718 Brassica carinata HOM05D011698 ORTHO05D013798 2.0e-06 55.8 46 50.0
C03p37410 Brassica napus HOM05D011698 ORTHO05D013798 2.0e-06 55.8 46 50.0
BolC3t16033H Brassica oleracea HOM05D011698 ORTHO05D013798 2.0e-06 55.8 46 50.0
Thhalv10029513m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 2.0e-06 55.8 52 53.8
TAR624G0858 Trochodendron aralioides HOM05D003286 ORTHO05D002463 2.0e-06 55.8 66 43.9
CARHR251340 Cardamine hirsuta HOM05D003286 ORTHO05D116431 3.4e-06 55.1 66 39.4
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 3.4e-06 55.1 38 55.3
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 3.4e-06 55.1 38 55.3
Sabra17G0024500 Salix brachista HOM05D007466 ORTHO05D002463 3.4e-06 55.1 40 57.5
TAR624G0182 Trochodendron aralioides HOM05D003286 ORTHO05D002463 3.4e-06 55.1 66 42.4
BraA05t20253Z Brassica rapa HOM05D007466 ORTHO05D002463 4.5e-06 54.7 43 51.2
Ciclev10017724m.g Citrus clementina HOM05D007466 ORTHO05D002463 4.5e-06 54.7 42 54.8
CsaV3_7G003740 Cucumis sativus L. HOM05D007466 ORTHO05D002463 4.5e-06 54.7 42 54.8
HanXRQChr14g0459021 Helianthus annuus HOM05D007466 ORTHO05D002463 4.5e-06 54.7 43 53.5
BcaB02g10474 Brassica carinata HOM05D007466 ORTHO05D002463 5.9e-06 54.3 43 48.8
BcaC02g11328 Brassica carinata HOM05D007466 ORTHO05D002463 5.9e-06 54.3 43 48.8
A05p13150 Brassica napus HOM05D007466 ORTHO05D002463 5.9e-06 54.3 43 48.8
C04p17280 Brassica napus HOM05D007466 ORTHO05D002463 5.9e-06 54.3 43 48.8
BolC4t23280H Brassica oleracea HOM05D007466 ORTHO05D002463 5.9e-06 54.3 43 48.8
SGA_v2.0_scaffold49G18335 Striga asiatica HOM05D003065 ORTHO05D003802 5.9e-06 54.3 40 55.0
TAR624G0130 Trochodendron aralioides HOM05D003286 ORTHO05D002463 5.9e-06 54.3 66 42.4
TAR624G1349 Trochodendron aralioides HOM05D003286 ORTHO05D002463 5.9e-06 54.3 66 42.4
Atru.chr6.3156 Acer truncatum HOM05D007466 ORTHO05D002463 7.7e-06 53.9 40 57.5
Lj1C757T0 Lonicera japonica HOM05D007466 ORTHO05D002463 7.7e-06 53.9 42 54.8
Manes.13G072400 Manihot esculenta HOM05D007466 ORTHO05D002463 7.7e-06 53.9 40 52.5


User provided reference genes

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