Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16182 Brassica carinata HOM05D009523 ORTHO05D000721 7.7e-103 377.1 182 100.0
BolC2t09971H Brassica oleracea HOM05D009523 ORTHO05D000721 7.7e-103 377.1 182 100.0
A02p25000 Brassica napus HOM05D009523 ORTHO05D000721 7.9e-100 367.1 182 97.3
C02p39580 Brassica napus HOM05D009523 ORTHO05D000721 1.8e-99 365.9 182 97.3
BraA02t07489Z Brassica rapa HOM05D009523 ORTHO05D000721 6.7e-99 364.0 182 96.7
BcaB05g23666 Brassica carinata HOM05D009523 ORTHO05D000721 1.4e-83 313.2 186 84.9
Thhalv10029004m.g Eutrema salsugineum HOM05D009523 ORTHO05D000721 1.5e-77 293.1 185 79.5
AL6G50100 Arabidopsis lyrata HOM05D009523 ORTHO05D000721 3.6e-76 288.5 186 78.5
Sp6g02860 Schrenkiella parvula HOM05D009523 ORTHO05D000721 2.2e-73 279.3 187 75.4
AT4G02830 Arabidopsis thaliana HOM05D009523 ORTHO05D000721 2.4e-72 275.8 187 76.5
CARHR251200 Cardamine hirsuta HOM05D009523 ORTHO05D000721 6.1e-68 261.2 187 72.7
Carub.0006s3422 Capsella rubella HOM05D009523 ORTHO05D000721 8.3e-65 250.8 186 71.5
C03p37500 Brassica napus HOM05D009523 ORTHO05D000721 8.9e-59 230.7 185 68.1
BolC3t16043H Brassica oleracea HOM05D009523 ORTHO05D000721 1.2e-58 230.3 194 65.5
A03p30820 Brassica napus HOM05D009523 ORTHO05D000721 1.5e-58 229.9 185 68.1
BraA03t12260Z Brassica rapa HOM05D009523 ORTHO05D000721 6.4e-57 224.6 188 67.0
BcaC01g06726 Brassica carinata HOM05D009523 ORTHO05D000721 8.0e-52 207.6 185 63.2
Aa31LG5G2410 Aethionema arabicum HOM05D009523 ORTHO05D000721 5.8e-50 201.4 184 59.2
A09p02220 Brassica napus HOM05D009523 ORTHO05D000721 1.1e-24 117.5 157 47.8
BraA09t35871Z Brassica rapa HOM05D009523 ORTHO05D000721 1.1e-24 117.5 157 47.8
C09p02310 Brassica napus HOM05D009523 ORTHO05D000721 1.4e-24 117.1 157 48.4
BolC9t53159H Brassica oleracea HOM05D009523 ORTHO05D000721 1.4e-24 117.1 157 48.4
THA.LOC104825998 Tarenaya hassleriana HOM05D009523 ORTHO05D000721 2.7e-23 112.8 146 47.3
BcaC04g24018 Brassica carinata HOM05D009523 ORTHO05D000721 3.5e-23 112.5 155 47.7
Hund05343 Selenicereus undatus HOM05D001128 ORTHO05D000721 5.3e-19 98.6 193 37.3
Thecc.01G280100 Theobroma cacao HOM05D001128 ORTHO05D000721 2.6e-18 96.3 193 37.8
Glyma.19G155600 Glycine max HOM05D001128 ORTHO05D000721 4.5e-18 95.5 194 38.1
MD11G1286400 Malus domestica HOM05D001128 ORTHO05D000721 7.6e-18 94.7 191 37.2
Glyma.03G153200 Glycine max HOM05D001128 ORTHO05D000721 1.3e-17 94.0 195 36.4
Prupe.8G241700 Prunus persica HOM05D001128 ORTHO05D000721 2.2e-17 93.2 191 36.1
Gohir.D08G204000 Gossypium hirsutum HOM05D009523 ORTHO05D000721 3.8e-17 92.4 182 38.5
Gorai.004G216000 Gossypium raimondii HOM05D009523 ORTHO05D000721 8.4e-17 91.3 182 38.5
Duzib138G1095 Durio zibethinus HOM05D001128 ORTHO05D000721 1.1e-16 90.9 187 39.0
Gorai.004G080700 Gossypium raimondii HOM05D001128 ORTHO05D000721 2.4e-16 89.7 194 37.1
Lj1g0006514 Lotus japonicus HOM05D001128 ORTHO05D000721 5.4e-16 88.6 182 35.2
Atru.chr5.1430 Acer truncatum HOM05D001128 ORTHO05D000721 2.7e-15 86.3 192 35.9
Gohir.A08G185900 Gossypium hirsutum HOM05D009523 ORTHO05D000721 2.7e-15 86.3 182 37.4
Sc17g0004110 Simmondsia chinensis HOM05D001128 ORTHO05D000721 1.0e-14 84.3 195 37.4
Ciclev10023667m.g Citrus clementina HOM05D001128 ORTHO05D000721 1.3e-14 84.0 191 39.3
Phvul.001G150600 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 1.3e-14 84.0 192 32.8
arahy.Tifrunner.gnm1.ann1.S3CEFB Arachis hypogaea HOM05D001128 ORTHO05D000721 1.8e-14 83.6 144 41.0
Cpa.g.sc52.31 Carica papaya HOM05D001128 ORTHO05D000721 3.0e-14 82.8 183 38.3
QL12p021963 Quercus lobata HOM05D001128 ORTHO05D000721 6.7e-14 81.6 191 35.6
Potri.005G208800 Populus trichocarpa HOM05D001128 ORTHO05D000721 8.7e-14 81.3 196 36.7
Gohir.D08G076400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.5e-13 79.7 191 34.0
Glyma.02G147700 Glycine max HOM05D001128 ORTHO05D000721 3.3e-13 79.3 192 33.3
Manes.01G208200 Manihot esculenta HOM05D001128 ORTHO05D000721 4.3e-13 79.0 189 36.5
Dinv32942 Davidia involucrata HOM05D001128 ORTHO05D000721 5.6e-13 78.6 188 36.2
Lalb_Chr06g0163041 Lupinus albus HOM05D001128 ORTHO05D000721 5.6e-13 78.6 192 32.8
MD03G1266000 Malus domestica HOM05D001128 ORTHO05D000721 9.6e-13 77.8 189 36.0
CiPaw.08G105000 Carya illinoinensis HOM05D001128 ORTHO05D000721 1.3e-12 77.4 119 46.2
FvH4_2g23650 Fragaria vesca HOM05D001128 ORTHO05D000721 1.3e-12 77.4 201 34.8
FAN24G2693 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.6e-12 77.0 201 34.8
QL12p021827 Quercus lobata HOM05D001128 ORTHO05D000721 1.6e-12 77.0 185 33.5
Phvul.007G171600 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 2.1e-12 76.6 196 32.7
Potri.002G053700 Populus trichocarpa HOM05D001128 ORTHO05D000721 2.1e-12 76.6 199 34.7
Psat6g060440 Pisum sativum HOM05D001128 ORTHO05D000721 3.6e-12 75.9 197 33.5
Glyma.10G026100 Glycine max HOM05D001128 ORTHO05D000721 4.8e-12 75.5 199 32.2
Sabra05G0158900 Salix brachista HOM05D001128 ORTHO05D000721 4.8e-12 75.5 140 40.7
RcHm_v2.0_Chr6g0291121 Rosa chinensis HOM05D001128 ORTHO05D000721 6.2e-12 75.1 196 35.2
VMungo0720G0300 Vigna mungo HOM05D001128 ORTHO05D000721 8.1e-12 74.7 196 32.1
Migut.D00291 Erythranthe guttata HOM05D001128 ORTHO05D000721 1.4e-11 73.9 148 39.2
TAR633G0329 Trochodendron aralioides HOM05D001128 ORTHO05D000721 1.4e-11 73.9 198 36.4
FAN15G2738 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.8e-11 73.6 198 33.8
Haze_04722 Corylus avellana HOM05D001128 ORTHO05D000721 2.4e-11 73.2 146 37.0
FAN20G0154 Fragaria x ananassa HOM05D001128 ORTHO05D000721 2.4e-11 73.2 197 33.5
Gohir.A08G067900 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.4e-11 73.2 137 38.7
GSVIVG01011088001 Vitis vinifera HOM05D001128 ORTHO05D000721 2.4e-11 73.2 232 30.6
Aqoxy2G03314 Aquilegia oxysepala HOM05D001128 ORTHO05D000721 3.1e-11 72.8 202 31.7
PGR044G1404 Punica granatum HOM05D001128 ORTHO05D000721 3.1e-11 72.8 132 41.7
Duzib211G0347 Durio zibethinus HOM05D001128 ORTHO05D000721 4.0e-11 72.4 209 34.0
SalBow4G1333 Salvia bowleyana HOM05D001128 ORTHO05D000721 4.0e-11 72.4 116 44.0
COL.COLO4_09103 Corchorus olitorius HOM05D005331 ORTHO05D007596 5.3e-11 72.0 148 39.9
Lsat_1_v5_gn_5_188320 Lactuca sativa HOM05D001128 ORTHO05D000721 5.3e-11 72.0 172 36.0
HanXRQChr01g0003181 Helianthus annuus HOM05D001128 ORTHO05D000721 6.9e-11 71.6 191 34.0
Sabra02G0043700 Salix brachista HOM05D001128 ORTHO05D000721 6.9e-11 71.6 200 35.0
Manes.05G075700 Manihot esculenta HOM05D001128 ORTHO05D000721 9.0e-11 71.2 192 33.3
FAN27G0408 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.2e-10 70.9 175 35.4
CANSAT25G3618 Cannabis sativa HOM05D001128 ORTHO05D000721 1.5e-10 70.5 186 33.9
Actinidia21110 Actinidia chinensis HOM05D001128 ORTHO05D000721 2.6e-10 69.7 131 38.2
Nn4g26238 Nelumbo nucifera HOM05D001128 ORTHO05D000721 4.5e-10 68.9 194 34.5
PSO541G6419 Papaver somniferum HOM05D001128 ORTHO05D000721 9.9e-10 67.8 228 30.7
SGA_v2.0_scaffold1G00467 Striga asiatica HOM05D001128 ORTHO05D000721 1.7e-09 67.0 126 38.1
Medtr1g072310 Medicago truncatula HOM05D001128 ORTHO05D000721 2.9e-09 66.2 195 32.8
ClCG09G006980 Citrullus lanatus HOM05D001128 ORTHO05D000721 3.8e-09 65.9 183 33.9
TPR.G9121 Trifolium pratense HOM05D001128 ORTHO05D000721 3.8e-09 65.9 192 31.2
Oeu028076.1 Olea europaea HOM05D001128 ORTHO05D000721 4.9e-09 65.5 180 35.0
Oeu028077.1 Olea europaea HOM05D001128 ORTHO05D000721 1.1e-08 64.3 179 33.5
Actinidia24889 Actinidia chinensis HOM05D000300 ORTHO05D000383 1.4e-08 63.9 147 36.1
Nn1g02211 Nelumbo nucifera HOM05D001128 ORTHO05D000721 1.4e-08 63.9 200 33.0
Peaxi162Scf01622g00014 Petunia axillaris HOM05D001128 ORTHO05D000721 1.9e-08 63.5 181 32.0
MELO3C015842.2 Cucumis melo HOM05D001128 ORTHO05D000721 4.2e-08 62.4 208 33.2
CsaV3_7G028180 Cucumis sativus L. HOM05D001128 ORTHO05D000721 9.3e-08 61.2 203 32.5
Eucgr.K03372 Eucalyptus grandis HOM05D001128 ORTHO05D000721 9.3e-08 61.2 203 31.5
Rhsim01G0275000 Rhododendron simsii HOM05D005331 ORTHO05D007596 1.2e-07 60.8 111 43.2
PSO675G1334 Papaver somniferum HOM05D001128 ORTHO05D000721 1.6e-07 60.5 123 38.2
Sed0019989 Sechium edule HOM05D001128 ORTHO05D000721 6.0e-07 58.5 174 34.5
Sed0025256 Sechium edule HOM05D001128 ORTHO05D000721 6.0e-07 58.5 126 37.3
Zm00001eb147910 Zea mays HOM05D001128 ORTHO05D000721 7.9e-07 58.2 108 41.7
HPP92_026966 Vanilla planifolia HOM05D001128 ORTHO05D000721 1.0e-06 57.8 108 41.7
MSTRG.21564 Avicennia marina HOM05D001128 ORTHO05D000721 1.3e-06 57.4 71 54.9
Sopen09g006510 Solanum pennellii HOM05D001128 ORTHO05D000721 2.3e-06 56.6 210 30.5
SGA_v2.0_scaffold11G05806 Striga asiatica HOM05D009523 ORTHO05D000721 2.3e-06 56.6 73 49.3
PSO384G2375 Papaver somniferum HOM05D001128 ORTHO05D000721 3.0e-06 56.2 140 32.9
Solyc09g011690.4 Solanum lycopersicum HOM05D001128 ORTHO05D000721 5.1e-06 55.5 210 30.5
PGSC0003DMG400011730 Solanum tuberosum HOM05D001128 ORTHO05D000721 8.7e-06 54.7 213 30.5


User provided reference genes

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