Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16178 Brassica carinata HOM05D000103 ORTHO05D012717 2.2e-58 228.8 117 100.0
C02p39540 Brassica napus HOM05D000103 ORTHO05D012717 3.2e-54 214.9 112 98.2
BolC2t09967H Brassica oleracea HOM05D000103 ORTHO05D012717 3.2e-54 214.9 112 98.2
BcaB01g03147 Brassica carinata HOM05D000103 ORTHO05D000049 5.7e-51 204.1 113 92.9
C03p31170 Brassica napus HOM05D000103 ORTHO05D000049 5.7e-51 204.1 113 92.9
BolC3t15464H Brassica oleracea HOM05D000103 ORTHO05D000049 5.7e-51 204.1 113 92.9
A03p26130 Brassica napus HOM05D000103 ORTHO05D000049 2.8e-50 201.8 113 92.0
BraA03t11828Z Brassica rapa HOM05D000103 ORTHO05D000049 2.8e-50 201.8 113 92.0
BcaC01g05009 Brassica carinata HOM05D000103 ORTHO05D000049 3.1e-49 198.4 113 91.2
C08p36550 Brassica napus HOM05D000103 ORTHO05D012717 1.2e-48 196.4 114 88.6
BolC8t51237H Brassica oleracea HOM05D000103 ORTHO05D012717 1.2e-48 196.4 114 88.6
Sp4g12500 Schrenkiella parvula HOM05D000103 ORTHO05D000049 2.9e-47 191.8 117 86.3
BcaC02g08066 Brassica carinata HOM05D000103 ORTHO05D000049 3.8e-47 191.4 118 85.6
C04p58820 Brassica napus HOM05D000103 ORTHO05D000049 3.8e-47 191.4 118 85.6
BolC4t27400H Brassica oleracea HOM05D000103 ORTHO05D000049 3.8e-47 191.4 118 85.6
BcaB06g28330 Brassica carinata HOM05D000103 ORTHO05D000049 8.5e-47 190.3 117 86.3
A04p22660 Brassica napus HOM05D000103 ORTHO05D000049 8.5e-47 190.3 118 84.7
BraA04t17809Z Brassica rapa HOM05D000103 ORTHO05D000049 8.5e-47 190.3 118 84.7
AT2G29940 Arabidopsis thaliana HOM05D000103 ORTHO05D000049 2.1e-45 185.7 117 83.8
Thhalv10016143m.g Eutrema salsugineum HOM05D000103 ORTHO05D000049 2.1e-45 185.7 117 83.8
Carub.0004s1102 Capsella rubella HOM05D000103 ORTHO05D000049 5.2e-44 181.0 118 80.5
AL4G24670 Arabidopsis lyrata HOM05D000103 ORTHO05D000049 1.5e-43 179.5 117 81.2
Aa31LG5G6750 Aethionema arabicum HOM05D000103 ORTHO05D000049 3.7e-42 174.9 116 80.2
CARHR123160 Cardamine hirsuta HOM05D000103 ORTHO05D000049 1.8e-41 172.6 117 78.6
BolC2t09965H Brassica oleracea HOM05D000103 ORTHO05D012717 7.7e-40 167.2 90 94.4
C02p39520 Brassica napus HOM05D000103 ORTHO05D012717 1.2e-35 153.3 112 75.9
MD11G1075100 Malus domestica HOM05D000103 ORTHO05D000049 1.6e-29 132.9 113 61.1
Dinv28638 Davidia involucrata HOM05D000103 ORTHO05D000049 1.4e-28 129.8 110 61.8
PSO017G1397 Papaver somniferum HOM05D000103 ORTHO05D000049 2.3e-28 129.0 113 57.5
Lj1A138T77 Lonicera japonica HOM05D000103 ORTHO05D012717 8.9e-28 127.1 111 64.0
PSO478G2414 Papaver somniferum HOM05D000103 ORTHO05D000049 1.5e-27 126.3 113 56.6
Aqoxy4G02587 Aquilegia oxysepala HOM05D000103 ORTHO05D000049 3.4e-27 125.2 111 60.4
Migut.N00795 Erythranthe guttata HOM05D000103 ORTHO05D000049 4.4e-27 124.8 111 61.3
Actinidia16092 Actinidia chinensis HOM05D000103 ORTHO05D000049 9.8e-27 123.6 109 58.7
PGR119G1012 Punica granatum HOM05D000103 ORTHO05D000049 1.3e-26 123.2 111 62.2
Lj2A1082G51 Lonicera japonica HOM05D000103 ORTHO05D012717 2.2e-26 122.5 110 58.2
Cpa.g.sc112.27 Carica papaya HOM05D000103 ORTHO05D000049 3.7e-26 121.7 115 55.7
Eucgr.E03908 Eucalyptus grandis HOM05D000103 ORTHO05D000049 3.7e-26 121.7 114 58.8
Duzib170G1142 Durio zibethinus HOM05D000103 ORTHO05D000049 4.9e-26 121.3 112 61.6
Eucgr.J01914 Eucalyptus grandis HOM05D000103 ORTHO05D000049 4.9e-26 121.3 110 58.2
Prupe.6G057900 Prunus persica HOM05D000103 ORTHO05D000049 8.3e-26 120.6 113 57.5
Rhsim13G0069800 Rhododendron simsii HOM05D000103 ORTHO05D000049 8.3e-26 120.6 111 59.5
SGA_v2.0_scaffold120G32915 Striga asiatica HOM05D000103 ORTHO05D000049 1.1e-25 120.2 112 56.2
CANSAT54G1913 Cannabis sativa HOM05D000103 ORTHO05D000049 1.9e-25 119.4 110 62.7
CsaV3_6G016230 Cucumis sativus L. HOM05D000103 ORTHO05D000049 1.9e-25 119.4 114 57.9
TWI79G0564 Tripterygium wilfordii HOM05D000103 ORTHO05D000049 1.9e-25 119.4 113 54.9
C04p63440 Brassica napus HOM05D000103 ORTHO05D012717 2.4e-25 119.0 65 90.8
MELO3C025851.2 Cucumis melo HOM05D000103 ORTHO05D000049 2.4e-25 119.0 114 61.4
Potri.001G251100 Populus trichocarpa HOM05D000103 ORTHO05D000049 2.4e-25 119.0 118 55.9
ClCG02G019560 Citrullus lanatus HOM05D000103 ORTHO05D000049 3.2e-25 118.6 114 58.8
unitig_26.g10206 Utricularia gibba HOM05D000103 ORTHO05D000049 3.2e-25 118.6 111 58.6
Ciclev10027679m.g Citrus clementina HOM05D000103 ORTHO05D000049 9.2e-25 117.1 111 57.7
C07p58340 Brassica napus HOM05D000103 ORTHO05D012717 1.2e-24 116.7 64 90.6
CiPaw.13G078000 Carya illinoinensis HOM05D000103 ORTHO05D000049 1.2e-24 116.7 110 59.1
Hma1.2p1_0146F.1_g065740 Hydrangea macrophylla HOM05D000103 ORTHO05D000049 1.2e-24 116.7 110 55.5
Nn2g11474 Nelumbo nucifera HOM05D000103 ORTHO05D000049 4.6e-24 114.8 113 55.8
CSS0026774 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 6.0e-24 114.4 110 55.5
FvH4_3g38510 Fragaria vesca HOM05D000103 ORTHO05D000049 6.0e-24 114.4 110 58.2
FAN11G1065 Fragaria x ananassa HOM05D000103 ORTHO05D000049 6.0e-24 114.4 110 58.2
FAN16G0120 Fragaria x ananassa HOM05D000103 ORTHO05D000049 6.0e-24 114.4 110 58.2
Manes.02G119800 Manihot esculenta HOM05D000103 ORTHO05D000049 6.0e-24 114.4 119 56.3
Peaxi162Scf00540g00518 Petunia axillaris HOM05D000103 ORTHO05D000049 6.0e-24 114.4 110 52.7
Thecc.09G302200 Theobroma cacao HOM05D000103 ORTHO05D000049 6.0e-24 114.4 115 54.8
COL.COLO4_19152 Corchorus olitorius HOM05D000103 ORTHO05D000049 7.8e-24 114.0 117 55.6
Sabra16G0152700 Salix brachista HOM05D000103 ORTHO05D000049 7.8e-24 114.0 118 55.1
TWI12G0082 Tripterygium wilfordii HOM05D000103 ORTHO05D000049 7.8e-24 114.0 113 53.1
QL01p038139 Quercus lobata HOM05D000103 ORTHO05D012717 2.3e-23 112.5 111 57.7
FAN21G2057 Fragaria x ananassa HOM05D000103 ORTHO05D000049 3.0e-23 112.1 110 57.3
Gohir.D07G107800 Gossypium hirsutum HOM05D000103 ORTHO05D000049 3.0e-23 112.1 115 55.7
Gorai.001G115700 Gossypium raimondii HOM05D000103 ORTHO05D000049 3.0e-23 112.1 115 55.7
Lsat_1_v5_gn_9_19181 Lactuca sativa HOM05D000103 ORTHO05D000049 3.9e-23 111.7 113 50.4
Medtr5g070320 Medicago truncatula HOM05D000103 ORTHO05D000049 6.6e-23 110.9 111 56.8
RcHm_v2.0_Chr5g0069411 Rosa chinensis HOM05D000103 ORTHO05D000049 6.6e-23 110.9 110 56.4
vmacro02965 Vaccinium macrocarpon HOM05D000103 ORTHO05D012717 1.9e-22 109.4 111 55.0
Lalb_Chr17g0345071 Lupinus albus HOM05D000103 ORTHO05D000049 3.3e-22 108.6 114 53.5
arahy.Tifrunner.gnm1.ann1.XJRE93 Arachis hypogaea HOM05D000103 ORTHO05D000049 4.3e-22 108.2 120 53.3
SalBow2G2553 Salvia bowleyana HOM05D000103 ORTHO05D000049 5.6e-22 107.8 111 56.8
arahy.Tifrunner.gnm1.ann1.WF5046 Arachis hypogaea HOM05D000103 ORTHO05D000049 7.3e-22 107.5 120 53.3
DCAR_007372 Daucus carota HOM05D000103 ORTHO05D000049 7.3e-22 107.5 114 53.5
Nitab4.5_0000010g0280 Nicotiana tabacum HOM05D000103 ORTHO05D000049 9.5e-22 107.1 109 51.4
Nitab4.5_0004421g0010 Nicotiana tabacum HOM05D000103 ORTHO05D000049 9.5e-22 107.1 109 51.4
Sed0008805 Sechium edule HOM05D000103 ORTHO05D000049 9.5e-22 107.1 120 53.3
Ciclev10027680m.g Citrus clementina HOM05D000103 ORTHO05D000049 1.6e-21 106.3 110 57.3
Gohir.A07G104100 Gossypium hirsutum HOM05D000103 ORTHO05D000049 1.6e-21 106.3 112 57.1
Solyc06g076930.2 Solanum lycopersicum HOM05D000103 ORTHO05D000049 2.8e-21 105.5 109 50.5
TPR.G5753 Trifolium pratense HOM05D000103 ORTHO05D012717 3.6e-21 105.1 113 54.0
vmacro02964 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 4.7e-21 104.8 110 54.5
CAN.G394.124 Capsicum annuum HOM05D000103 ORTHO05D000049 1.1e-20 103.6 109 47.7
Ca_05596_v3 Cicer arietinum L. HOM05D000103 ORTHO05D000049 1.1e-20 103.6 113 53.1
QL01p038189 Quercus lobata HOM05D000103 ORTHO05D000049 1.1e-20 103.6 110 52.7
HanXRQChr08g0229431 Helianthus annuus HOM05D000103 ORTHO05D000049 1.4e-20 103.2 110 50.0
Sopen06g033330 Solanum pennellii HOM05D000103 ORTHO05D000049 1.4e-20 103.2 109 49.5
Cfa011692 Carpinus fangiana HOM05D000103 ORTHO05D000049 2.3e-20 102.4 110 54.5
ATR0618G045 Amborella trichopoda HOM05D000103 ORTHO05D000049 3.1e-20 102.1 112 50.0
AUR62001767 Chenopodium quinoa HOM05D000103 ORTHO05D000049 3.1e-20 102.1 110 54.5
MBI14_g31685_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D000049 3.1e-20 102.1 109 48.6
LjContig00155g0003118 Lotus japonicus HOM05D000103 ORTHO05D000049 4.0e-20 101.7 118 51.7
Ah.08g221150 Amaranthus hybridus HOM05D000103 ORTHO05D000049 5.2e-20 101.3 112 51.8
AUR62009550 Chenopodium quinoa HOM05D000103 ORTHO05D000049 5.2e-20 101.3 110 54.5
Nn2g13700 Nelumbo nucifera HOM05D000103 ORTHO05D000049 6.8e-20 100.9 109 52.3
Phvul.008G261600 Phaseolus vulgaris HOM05D000103 ORTHO05D000049 6.8e-20 100.9 113 53.1
Gohir.D07G107900 Gossypium hirsutum HOM05D000103 ORTHO05D000049 8.9e-20 100.5 118 55.1
Gorai.001G116000 Gossypium raimondii HOM05D000103 ORTHO05D000049 8.9e-20 100.5 118 55.1
ECA247G3606 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.5e-19 99.8 110 50.9
VMungo0540G0427 Vigna mungo HOM05D000103 ORTHO05D000049 2.6e-19 99.0 107 51.4
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 4.4e-19 98.2 109 50.5
VMungo0647G0687 Vigna mungo HOM05D000103 ORTHO05D000049 5.8e-19 97.8 110 53.6
Glyma.14G193300 Glycine max HOM05D000103 ORTHO05D000049 9.8e-19 97.1 116 50.9
Psat2g058680 Pisum sativum HOM05D000103 ORTHO05D000049 1.7e-18 96.3 113 50.4
Phvul.006G067700 Phaseolus vulgaris HOM05D000103 ORTHO05D000049 2.9e-18 95.5 107 50.5
Lalb_Chr15g0082881 Lupinus albus HOM05D000103 ORTHO05D012717 4.9e-18 94.7 109 53.2
AUR62001651 Chenopodium quinoa HOM05D000103 ORTHO05D000049 8.3e-18 94.0 114 49.1
Nn2g13697 Nelumbo nucifera HOM05D000103 ORTHO05D000049 8.3e-18 94.0 109 47.7
AUR62020126 Chenopodium quinoa HOM05D000103 ORTHO05D000049 4.1e-17 91.7 109 49.5
Glyma.18G063400 Glycine max HOM05D000103 ORTHO05D000049 5.4e-17 91.3 109 48.6
Ca_14929_v3 Cicer arietinum L. HOM05D000103 ORTHO05D000049 9.2e-17 90.5 110 50.0
EL10Ac7g16163 Beta vulgaris HOM05D000103 ORTHO05D000049 1.2e-16 90.1 111 50.5
Lj6g0006050 Lotus japonicus HOM05D000103 ORTHO05D000049 5.1e-15 84.7 112 46.4
Medtr3g463680 Medicago truncatula HOM05D000103 ORTHO05D000049 6.6e-15 84.3 103 48.5
GSVIVG01024743001 Vitis vinifera HOM05D000103 ORTHO05D000049 1.1e-14 83.6 93 52.7
Psat5g158800 Pisum sativum HOM05D000103 ORTHO05D000049 1.5e-14 83.2 107 48.6
TPR.G21169 Trifolium pratense HOM05D000103 ORTHO05D000049 3.3e-14 82.0 101 49.5
Actinidia14199 Actinidia chinensis HOM05D000103 ORTHO05D012717 4.0e-12 75.1 92 50.0
Sopen02g026490 Solanum pennellii HOM05D000103 ORTHO05D000049 6.8e-12 74.3 110 43.6
Solyc02g081870.4 Solanum lycopersicum HOM05D000103 ORTHO05D000049 1.2e-11 73.6 110 43.6
CiPaw.05G225200 Carya illinoinensis HOM05D000103 ORTHO05D012717 9.9e-11 70.5 82 48.8
Haze_24311 Corylus avellana HOM05D000103 ORTHO05D000049 2.7e-08 62.4 56 55.4
Haze_08242 Corylus avellana HOM05D000103 ORTHO05D000049 3.3e-06 55.5 41 65.9


User provided reference genes

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