Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16177 Brassica carinata HOM05D000461 ORTHO05D016800 2.5e-47 191.8 100 100.0
C06p08340 Brassica napus HOM05D000313 ORTHO05D016800 4.6e-33 144.4 92 88.0
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 1.7e-32 142.5 77 98.7
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 1.7e-32 142.5 77 98.7
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 1.1e-31 139.8 77 96.1
BcaC04g21511 Brassica carinata HOM05D000313 ORTHO05D016800 2.4e-26 122.1 96 75.0
BcaB05g24137 Brassica carinata HOM05D000461 ORTHO05D001840 4.3e-23 111.3 66 89.4
BcaC03g14722 Brassica carinata HOM05D000461 ORTHO05D001840 2.1e-22 109.0 66 87.9
C02p21660 Brassica napus HOM05D000461 ORTHO05D001840 2.1e-22 109.0 66 87.9
BolC2t08301H Brassica oleracea HOM05D000461 ORTHO05D001840 2.1e-22 109.0 66 87.9
A02p13380 Brassica napus HOM05D000461 ORTHO05D001840 6.2e-22 107.5 66 86.4
BraA02t06397Z Brassica rapa HOM05D000461 ORTHO05D001840 6.2e-22 107.5 66 86.4
Thhalv10018447m.g Eutrema salsugineum HOM05D000461 ORTHO05D001840 9.0e-21 103.6 66 86.4
Sp5g20840 Schrenkiella parvula HOM05D000461 ORTHO05D001840 2.6e-20 102.1 66 83.3
C09p30920 Brassica napus HOM05D000313 ORTHO05D016800 1.3e-19 99.8 69 84.1
CARHR057700 Cardamine hirsuta HOM05D000461 ORTHO05D001840 1.7e-19 99.4 66 83.3
Carub.0002s1172 Capsella rubella HOM05D000461 ORTHO05D001840 2.2e-19 99.0 66 81.8
AT1G65840 Arabidopsis thaliana HOM05D000461 ORTHO05D001840 1.6e-17 92.8 64 81.2
AL2G23210 Arabidopsis lyrata HOM05D000461 ORTHO05D001840 2.7e-17 92.0 64 79.7
C04p23610 Brassica napus HOM05D000313 ORTHO05D000065 7.9e-17 90.5 65 81.5
THA.LOC104805661 Tarenaya hassleriana HOM05D000461 ORTHO05D001840 3.0e-16 88.6 66 69.7
Aa31LG2G2640 Aethionema arabicum HOM05D000461 ORTHO05D001840 8.7e-16 87.0 66 75.8
THA.LOC104822137 Tarenaya hassleriana HOM05D000461 ORTHO05D001840 8.7e-16 87.0 66 71.2
arahy.Tifrunner.gnm1.ann1.EM7V1A Arachis hypogaea HOM05D000461 ORTHO05D001840 4.9e-11 71.2 66 57.6
arahy.Tifrunner.gnm1.ann1.I6VHAV Arachis hypogaea HOM05D000461 ORTHO05D001840 4.9e-11 71.2 66 57.6
VMungo0540G2033 Vigna mungo HOM05D000461 ORTHO05D001840 4.9e-11 71.2 66 59.1
Medtr3g064370 Medicago truncatula HOM05D000461 ORTHO05D001840 1.9e-10 69.3 66 54.5
TPR.G37363 Trifolium pratense HOM05D000461 ORTHO05D001840 2.5e-10 68.9 66 54.5
Glyma.02G240000 Glycine max HOM05D000461 ORTHO05D001840 3.2e-10 68.6 66 57.6
Glyma.18G045100 Glycine max HOM05D000461 ORTHO05D001840 4.2e-10 68.2 66 56.1
Lalb_Chr04g0251541 Lupinus albus HOM05D000461 ORTHO05D001840 4.2e-10 68.2 66 57.6
Ciclev10011567m.g Citrus clementina HOM05D000461 ORTHO05D001840 5.5e-10 67.8 66 54.5
Glyma.11G209027 Glycine max HOM05D000461 ORTHO05D001840 5.5e-10 67.8 66 54.5
FvH4_1g27430 Fragaria vesca HOM05D000461 ORTHO05D001840 1.2e-09 66.6 67 53.7
arahy.Tifrunner.gnm1.ann1.31PAIA Arachis hypogaea HOM05D000461 ORTHO05D001840 1.6e-09 66.2 66 57.6
Prupe.3G013800 Prunus persica HOM05D000461 ORTHO05D001840 1.6e-09 66.2 66 54.5
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 2.7e-09 65.5 77 54.5
FAN23G0841 Fragaria x ananassa HOM05D000461 ORTHO05D001840 2.7e-09 65.5 67 53.7
FAN28G0505 Fragaria x ananassa HOM05D000461 ORTHO05D001840 2.7e-09 65.5 67 53.7
Glyma.14G209400 Glycine max HOM05D000461 ORTHO05D001840 2.7e-09 65.5 66 56.1
Lalb_Chr18g0053781 Lupinus albus HOM05D000461 ORTHO05D001840 2.7e-09 65.5 66 54.5
MD09G1280300 Malus domestica HOM05D000461 ORTHO05D001840 2.7e-09 65.5 66 54.5
Phvul.006G085900 Phaseolus vulgaris HOM05D000461 ORTHO05D001840 2.7e-09 65.5 66 54.5
VMungo0647G1549 Vigna mungo HOM05D000461 ORTHO05D001840 2.7e-09 65.5 66 57.6
FAN26G2136 Fragaria x ananassa HOM05D000461 ORTHO05D001840 3.5e-09 65.1 67 52.2
Lj6g0026993 Lotus japonicus HOM05D000461 ORTHO05D001840 3.5e-09 65.1 66 57.6
RcHm_v2.0_Chr3g0488611 Rosa chinensis HOM05D000461 ORTHO05D001840 3.5e-09 65.1 67 53.7
Phvul.008G241700 Phaseolus vulgaris HOM05D000461 ORTHO05D001840 4.6e-09 64.7 66 53.0
QL02p063999 Quercus lobata HOM05D000461 ORTHO05D001840 4.6e-09 64.7 66 54.5
Haze_14334 Corylus avellana HOM05D000461 ORTHO05D001840 7.9e-09 63.9 66 54.5
Nn4g24826 Nelumbo nucifera HOM05D000461 ORTHO05D001840 1.3e-08 63.2 66 54.5
vmacro20456 Vaccinium macrocarpon HOM05D000461 ORTHO05D016800 1.3e-08 63.2 66 51.5
Cfa007742 Carpinus fangiana HOM05D000461 ORTHO05D001840 1.8e-08 62.8 66 53.0
CDE08G0540 Ceratophyllum demersum HOM05D000461 ORTHO05D001840 1.8e-08 62.8 66 53.0
Cpa.g.sc904.4 Carica papaya HOM05D000461 ORTHO05D001840 3.0e-08 62.0 54 61.1
CDE04G2570 Ceratophyllum demersum HOM05D000461 ORTHO05D001840 3.0e-08 62.0 66 53.0
PGR042G0985 Punica granatum HOM05D000461 ORTHO05D001840 3.0e-08 62.0 66 54.5
Lj2A510G34 Lonicera japonica HOM05D000461 ORTHO05D001840 3.9e-08 61.6 66 53.0
DCAR_003397 Daucus carota HOM05D000461 ORTHO05D001840 5.1e-08 61.2 67 55.2
Eucgr.J01648 Eucalyptus grandis HOM05D000461 ORTHO05D001840 1.1e-07 60.1 68 54.4
MD17G1287500 Malus domestica HOM05D000461 ORTHO05D001840 1.1e-07 60.1 73 50.7
CiPaw.04G050100 Carya illinoinensis HOM05D000461 ORTHO05D001840 1.5e-07 59.7 66 50.0
Hma1.2p1_2537F.1_g324090 Hydrangea macrophylla HOM05D000461 ORTHO05D001840 1.9e-07 59.3 66 51.5
Actinidia17155 Actinidia chinensis HOM05D000461 ORTHO05D001840 2.5e-07 58.9 66 48.5
TAR374G1607 Trochodendron aralioides HOM05D000461 ORTHO05D001840 3.3e-07 58.5 66 51.5
Solyc12g006370.3 Solanum lycopersicum HOM05D000461 ORTHO05D001840 5.7e-07 57.8 45 64.4
Sopen12g002320 Solanum pennellii HOM05D000461 ORTHO05D001840 5.7e-07 57.8 45 64.4
FAN19G2162 Fragaria x ananassa HOM05D005252 ORTHO05D006788 7.4e-07 57.4 53 54.7
CSS0020181 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D001840 9.6e-07 57.0 66 48.5
Potri.017G144001 Populus trichocarpa HOM05D000461 ORTHO05D001840 9.6e-07 57.0 53 56.6
Sabra17G0120300 Salix brachista HOM05D000461 ORTHO05D001840 9.6e-07 57.0 57 54.4
PGSC0003DMG400028810 Solanum tuberosum HOM05D000461 ORTHO05D001840 9.6e-07 57.0 44 65.9
Ah.01g013220 Amaranthus hybridus HOM05D000461 ORTHO05D001840 1.3e-06 56.6 37 75.7
Cc07_g12680 Coffea canephora HOM05D000461 ORTHO05D001840 1.6e-06 56.2 65 52.3
SGA_v2.0_scaffold45G17102 Striga asiatica HOM05D000461 ORTHO05D001840 1.6e-06 56.2 61 49.2
TWI53G0856 Tripterygium wilfordii HOM05D000461 ORTHO05D001840 1.6e-06 56.2 35 80.0
unitig_699.g19634 Utricularia gibba HOM05D000461 ORTHO05D001840 2.1e-06 55.8 45 62.2
Ah.01g002030 Amaranthus hybridus HOM05D000461 ORTHO05D001840 2.8e-06 55.5 37 73.0
EL10Ac9g22876 Beta vulgaris HOM05D000461 ORTHO05D001840 2.8e-06 55.5 37 73.0
Migut.K00981 Erythranthe guttata HOM05D000461 ORTHO05D001840 2.8e-06 55.5 61 50.8
Peaxi162Scf00047g02337 Petunia axillaris HOM05D000461 ORTHO05D001840 2.8e-06 55.5 41 70.7
Sc15g0002330 Simmondsia chinensis HOM05D000461 ORTHO05D001840 2.8e-06 55.5 66 47.0
SGA_v2.0_scaffold115G32034 Striga asiatica HOM05D000461 ORTHO05D001840 2.8e-06 55.5 61 49.2
MSTRG.3666 Avicennia marina HOM05D000461 ORTHO05D001840 3.7e-06 55.1 61 47.5
Manes.01G124500 Manihot esculenta HOM05D000461 ORTHO05D001840 3.7e-06 55.1 62 46.8
Peaxi162Scf00351g00911 Petunia axillaris HOM05D000461 ORTHO05D001840 3.7e-06 55.1 37 78.4
Potri.004G075800 Populus trichocarpa HOM05D000461 ORTHO05D001840 3.7e-06 55.1 56 51.8
PGR042G1527 Punica granatum HOM05D000461 ORTHO05D001840 3.7e-06 55.1 37 75.7
Hund08345 Selenicereus undatus HOM05D000461 ORTHO05D001840 3.7e-06 55.1 37 73.0
Solyc07g043590.3 Solanum lycopersicum HOM05D000461 ORTHO05D001840 3.7e-06 55.1 37 78.4
Sopen07g023160 Solanum pennellii HOM05D000461 ORTHO05D001840 3.7e-06 55.1 37 78.4
PGSC0003DMG400015925 Solanum tuberosum HOM05D000461 ORTHO05D001840 3.7e-06 55.1 37 78.4
unitig_85.g27321 Utricularia gibba HOM05D000461 ORTHO05D001840 3.7e-06 55.1 37 75.7
AUR62015169 Chenopodium quinoa HOM05D000461 ORTHO05D001840 4.8e-06 54.7 37 75.7
Cc05_g00340 Coffea canephora HOM05D000461 ORTHO05D001840 4.8e-06 54.7 37 75.7
Gohir.A12G092200 Gossypium hirsutum HOM05D000461 ORTHO05D001840 4.8e-06 54.7 37 75.7
Gohir.D12G092000 Gossypium hirsutum HOM05D000461 ORTHO05D001840 4.8e-06 54.7 37 75.7
Gorai.008G099600 Gossypium raimondii HOM05D000461 ORTHO05D001840 4.8e-06 54.7 37 75.7
LjContig00049g0017622 Lotus japonicus HOM05D000461 ORTHO05D001840 4.8e-06 54.7 66 50.0
Nitab4.5_0001843g0100 Nicotiana tabacum HOM05D000461 ORTHO05D001840 4.8e-06 54.7 37 75.7
Nitab4.5_0007665g0030 Nicotiana tabacum HOM05D000461 ORTHO05D001840 4.8e-06 54.7 37 75.7
COL.COLO4_13434 Corchorus olitorius HOM05D000461 ORTHO05D016800 8.2e-06 53.9 57 52.6
SMO119G0288 Selaginella moellendorffii HOM05D000461 ORTHO05D001840 8.2e-06 53.9 35 74.3
SMO351G0092 Selaginella moellendorffii HOM05D000461 ORTHO05D001840 8.2e-06 53.9 35 74.3
SGA_v2.0_scaffold181G39731 Striga asiatica HOM05D000461 ORTHO05D001840 8.2e-06 53.9 44 61.4
THA.LOC104821208 Tarenaya hassleriana HOM05D000461 ORTHO05D001840 8.2e-06 53.9 38 73.7


User provided reference genes

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