Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 4.5e-83 311.2 159 100.0
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-49 199.9 105 94.3
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-49 199.9 105 94.3
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-49 199.9 105 94.3
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-49 199.9 105 94.3
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.5e-49 199.9 105 94.3
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.5e-49 199.9 105 94.3
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 1.5e-49 199.9 105 94.3
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 4.3e-49 198.4 105 93.3
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 5.6e-49 198.0 105 93.3
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 9.5e-49 197.2 105 93.3
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 9.5e-49 197.2 105 92.4
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 9.5e-49 197.2 105 92.4
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 9.5e-49 197.2 105 92.4
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-48 196.8 105 93.3
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-48 196.8 105 93.3
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 4.7e-48 194.9 105 92.4
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 6.2e-48 194.5 152 69.7
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 1.8e-47 193.0 105 91.4
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-47 193.0 153 69.3
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.8e-47 193.0 105 91.4
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 3.1e-47 192.2 105 91.4
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 8.9e-47 190.7 152 69.7
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-46 189.9 100 93.0
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-46 189.9 100 93.0
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-46 189.9 104 90.4
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-46 189.9 100 93.0
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.5e-46 189.9 100 93.0
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.5e-46 189.9 105 88.6
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 4.4e-46 188.3 105 88.6
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 7.5e-46 187.6 105 87.6
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 4.9e-45 184.9 105 85.7
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 1.6e-43 179.9 96 91.7
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.6e-43 179.9 96 91.7
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 7.8e-43 177.6 103 84.5
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 7.8e-43 177.6 103 84.5
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 2.5e-41 172.6 103 80.6
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 3.3e-41 172.2 103 80.6
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 5.6e-41 171.4 103 81.6
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 5.6e-41 171.4 103 80.6
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 7.3e-41 171.0 103 81.6
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 7.3e-41 171.0 103 79.6
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 7.3e-41 171.0 103 80.6
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 9.5e-41 170.6 87 96.6
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 9.5e-41 170.6 103 79.6
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 9.5e-41 170.6 103 79.6
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 9.5e-41 170.6 100 83.0
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 1.6e-40 169.9 103 78.6
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 1.6e-40 169.9 103 78.6
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 2.1e-40 169.5 103 81.6
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 2.1e-40 169.5 105 80.0
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 2.1e-40 169.5 105 78.1
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.8e-40 169.1 87 95.4
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 2.8e-40 169.1 105 78.1
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 3.6e-40 168.7 101 80.2
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.6e-40 168.7 103 78.6
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.6e-40 168.7 103 78.6
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 3.6e-40 168.7 103 80.6
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 3.6e-40 168.7 103 78.6
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 4.7e-40 168.3 104 80.8
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 6.2e-40 167.9 105 77.1
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 6.2e-40 167.9 103 78.6
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 8.1e-40 167.5 103 77.7
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 8.1e-40 167.5 103 79.6
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 8.1e-40 167.5 104 80.8
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 8.1e-40 167.5 103 79.6
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 8.1e-40 167.5 103 79.6
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.1e-39 167.2 103 81.6
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.1e-39 167.2 104 79.8
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 1.1e-39 167.2 104 79.8
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 1.1e-39 167.2 103 79.6
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.1e-39 167.2 103 79.6
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.4e-39 166.8 103 77.7
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 1.4e-39 166.8 106 78.3
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.4e-39 166.8 95 84.2
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.4e-39 166.8 103 78.6
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.4e-39 166.8 96 83.3
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 1.4e-39 166.8 103 77.7
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 1.8e-39 166.4 103 79.6
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.8e-39 166.4 103 77.7
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.8e-39 166.4 103 77.7
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 2.3e-39 166.0 104 77.9
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 3.1e-39 165.6 104 78.8
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 3.1e-39 165.6 103 77.7
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 3.1e-39 165.6 103 77.7
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 3.1e-39 165.6 103 76.7
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 4.0e-39 165.2 103 78.6
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 4.0e-39 165.2 103 76.7
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 4.0e-39 165.2 103 78.6
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 5.2e-39 164.9 101 80.2
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 5.2e-39 164.9 104 76.0
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.2e-39 164.9 104 76.0
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.2e-39 164.9 104 76.0
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.2e-39 164.9 104 76.0
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 5.2e-39 164.9 104 76.0
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 5.2e-39 164.9 105 77.1
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 5.2e-39 164.9 105 77.1
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 5.2e-39 164.9 105 77.1
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 5.2e-39 164.9 103 76.7
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 6.8e-39 164.5 95 82.1
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 6.8e-39 164.5 105 76.2
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 6.8e-39 164.5 103 76.7
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 6.8e-39 164.5 103 76.7
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 8.9e-39 164.1 96 82.3
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 8.9e-39 164.1 103 77.7
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 8.9e-39 164.1 104 76.0
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 8.9e-39 164.1 104 76.0
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.2e-38 163.7 103 75.7
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 1.2e-38 163.7 94 83.0
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 1.2e-38 163.7 103 76.7
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 2.0e-38 162.9 94 83.0
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 2.0e-38 162.9 103 76.7
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.0e-38 162.9 103 79.6
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.0e-38 162.9 103 79.6
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 2.0e-38 162.9 103 75.7
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.0e-38 162.9 149 61.1
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.6e-38 162.5 103 76.7
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 2.6e-38 162.5 103 79.6
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 2.6e-38 162.5 103 79.6
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 2.6e-38 162.5 103 79.6
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.6e-38 162.5 156 59.0
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 2.6e-38 162.5 103 79.6
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 4.4e-38 161.8 103 76.7
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 4.4e-38 161.8 105 75.2
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 4.4e-38 161.8 86 93.0
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 4.4e-38 161.8 103 75.7
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 4.4e-38 161.8 103 75.7
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 5.8e-38 161.4 94 81.9
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 7.5e-38 161.0 94 80.9
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 9.8e-38 160.6 103 78.6
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 9.8e-38 160.6 96 81.2
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.3e-37 160.2 96 80.2
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.3e-37 160.2 96 80.2
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.3e-37 160.2 95 81.1
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.7e-37 159.8 101 78.2
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 2.2e-37 159.5 100 77.0
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 3.7e-37 158.7 94 80.9
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 1.1e-36 157.1 104 76.0
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.4e-36 156.8 97 79.4
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 1.9e-36 156.4 96 78.1
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 3.2e-36 155.6 86 89.5
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 3.0e-34 149.1 103 73.8
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 5.1e-34 148.3 96 75.0
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.5e-33 146.0 87 81.6
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 3.3e-33 145.6 86 82.6
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-31 140.6 104 74.0
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.4e-30 135.6 113 62.8
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 1.9e-28 129.8 87 74.7
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 7.8e-27 124.4 70 88.6
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 5.1e-26 121.7 70 87.1
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 8.6e-26 120.9 82 69.5
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 8.6e-26 120.9 73 82.2
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 2.1e-24 116.3 69 85.5
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 3.6e-24 115.5 70 78.6
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.4e-23 113.6 80 63.8
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.5e-22 110.2 105 55.2
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 7.6e-22 107.8 56 91.1
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.3e-21 107.1 65 76.9
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 2.2e-21 106.3 89 53.9
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 3.5e-19 99.0 65 73.8
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 1.7e-18 96.7 80 63.8
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 5.1e-18 95.1 89 55.1
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.5e-17 92.8 56 80.4
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 2.1e-16 89.7 55 76.4
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 2.1e-16 89.7 48 87.5
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 6.2e-16 88.2 56 78.6
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 6.2e-16 88.2 60 71.7
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.2e-14 84.0 56 75.0
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.9e-13 78.6 166 39.2
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 1.6e-11 73.6 141 36.9
BNapus_Darmor_BZH_scaffold_38p02420 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-09 67.0 34 91.2


User provided reference genes

Program Settings