Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 2.1e-49 198.7 101 100.0
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 4.3e-47 191.0 101 96.0
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 4.3e-47 191.0 101 96.0
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 1.3e-46 189.5 101 96.0
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 1.3e-46 189.5 101 96.0
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 1.3e-46 189.5 101 96.0
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 2.8e-46 188.3 101 95.0
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 2.8e-46 188.3 101 95.0
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 2.8e-46 188.3 101 95.0
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 2.8e-46 188.3 101 95.0
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 2.8e-46 188.3 101 95.0
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 2.8e-46 188.3 101 95.0
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 2.8e-46 188.3 101 95.0
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 2.8e-46 188.3 101 95.0
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 2.8e-46 188.3 101 95.0
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 3.7e-46 188.0 101 94.1
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 6.2e-46 187.2 101 93.1
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 8.1e-46 186.8 101 93.1
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 1.4e-45 186.0 101 92.1
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 1.4e-45 186.0 101 92.1
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 1.4e-45 186.0 101 92.1
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 3.4e-44 181.4 98 91.8
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 3.8e-43 177.9 98 88.8
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 3.8e-43 177.9 98 88.8
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 4.9e-43 177.6 98 87.8
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 1.1e-42 176.4 98 87.8
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 1.1e-42 176.4 98 84.7
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.1e-42 176.4 98 86.7
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.1e-42 176.4 98 86.7
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.1e-42 176.4 98 86.7
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 1.4e-42 176.0 98 86.7
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 1.9e-42 175.6 98 86.7
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 1.9e-42 175.6 98 86.7
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.5e-42 175.3 98 85.7
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.5e-42 175.3 98 85.7
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 2.5e-42 175.3 98 85.7
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 2.5e-42 175.3 98 85.7
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 2.5e-42 175.3 98 85.7
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 2.5e-42 175.3 98 85.7
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 3.2e-42 174.9 98 86.7
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 3.2e-42 174.9 98 85.7
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 3.2e-42 174.9 98 84.7
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 3.2e-42 174.9 98 86.7
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 3.2e-42 174.9 98 86.7
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 3.2e-42 174.9 98 84.7
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 3.2e-42 174.9 98 86.7
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 4.2e-42 174.5 98 85.7
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 4.2e-42 174.5 98 86.7
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 5.5e-42 174.1 98 86.7
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 5.5e-42 174.1 98 83.7
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 7.1e-42 173.7 98 84.7
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 7.1e-42 173.7 98 84.7
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 7.1e-42 173.7 98 84.7
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 7.1e-42 173.7 98 84.7
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 9.3e-42 173.3 98 85.7
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 9.3e-42 173.3 98 84.7
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 9.3e-42 173.3 98 84.7
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 9.3e-42 173.3 98 84.7
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 9.3e-42 173.3 98 83.7
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 9.3e-42 173.3 98 83.7
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 1.2e-41 172.9 98 83.7
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 1.2e-41 172.9 98 83.7
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.2e-41 172.9 98 82.7
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 1.2e-41 172.9 98 85.7
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.6e-41 172.6 98 85.7
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.6e-41 172.6 98 83.7
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.6e-41 172.6 98 85.7
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 1.6e-41 172.6 98 84.7
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 1.6e-41 172.6 98 82.7
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 2.1e-41 172.2 98 82.7
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 2.1e-41 172.2 98 84.7
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 2.1e-41 172.2 98 84.7
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 2.1e-41 172.2 98 84.7
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 2.1e-41 172.2 98 84.7
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 2.1e-41 172.2 98 83.7
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 2.1e-41 172.2 98 83.7
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 2.1e-41 172.2 98 83.7
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 2.1e-41 172.2 98 85.7
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.7e-41 171.8 98 83.7
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.7e-41 171.8 98 83.7
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.7e-41 171.8 98 83.7
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 2.7e-41 171.8 98 84.7
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 2.7e-41 171.8 98 83.7
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 2.7e-41 171.8 98 83.7
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 3.5e-41 171.4 95 85.3
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 3.5e-41 171.4 98 83.7
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 3.5e-41 171.4 98 84.7
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 3.5e-41 171.4 98 82.7
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 4.6e-41 171.0 98 84.7
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 4.6e-41 171.0 98 81.6
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 4.6e-41 171.0 98 83.7
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 6.0e-41 170.6 98 83.7
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 6.0e-41 170.6 98 83.7
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 6.0e-41 170.6 98 84.7
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 6.0e-41 170.6 98 81.6
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.9e-41 170.2 98 82.7
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 7.9e-41 170.2 98 82.7
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 7.9e-41 170.2 98 82.7
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 7.9e-41 170.2 98 81.6
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 1.0e-40 169.9 98 81.6
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.0e-40 169.9 98 82.7
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 1.0e-40 169.9 98 82.7
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 1.3e-40 169.5 98 82.7
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 1.3e-40 169.5 98 82.7
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 1.3e-40 169.5 98 82.7
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 1.3e-40 169.5 98 82.7
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 1.3e-40 169.5 98 81.6
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 1.3e-40 169.5 98 81.6
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 1.3e-40 169.5 98 81.6
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 1.3e-40 169.5 98 82.7
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.8e-40 169.1 98 81.6
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.8e-40 169.1 98 80.6
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 1.8e-40 169.1 98 81.6
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 1.8e-40 169.1 98 83.7
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 1.8e-40 169.1 98 83.7
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 1.8e-40 169.1 98 82.7
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 1.8e-40 169.1 98 81.6
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 1.8e-40 169.1 98 81.6
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 2.3e-40 168.7 98 80.6
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 2.3e-40 168.7 98 80.6
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.3e-40 168.7 98 81.6
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 2.3e-40 168.7 98 82.7
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.3e-40 168.7 98 81.6
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 2.3e-40 168.7 98 81.6
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 2.3e-40 168.7 98 80.6
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 3.0e-40 168.3 98 80.6
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 3.0e-40 168.3 98 82.7
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 3.9e-40 167.9 98 81.6
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 3.9e-40 167.9 98 78.6
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 3.9e-40 167.9 98 84.7
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 3.9e-40 167.9 98 83.7
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 3.9e-40 167.9 98 83.7
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 3.9e-40 167.9 98 80.6
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 5.1e-40 167.5 98 81.6
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 6.7e-40 167.2 98 82.7
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 8.7e-40 166.8 98 81.6
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 1.5e-39 166.0 98 80.6
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 1.9e-39 165.6 98 81.6
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 2.5e-39 165.2 98 81.6
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 3.3e-39 164.9 98 80.6
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 5.7e-39 164.1 98 80.6
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 9.6e-39 163.3 98 77.6
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 1.6e-38 162.5 109 74.3
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 4.8e-38 161.0 98 79.6
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 5.3e-37 157.5 95 73.7
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.9e-37 157.1 93 77.4
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.9e-37 157.1 93 77.4
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.9e-37 157.1 93 77.4
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 6.9e-37 157.1 95 72.6
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 1.5e-36 156.0 100 69.0
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 3.8e-35 151.4 88 80.7
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.5e-34 147.5 93 73.1
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 7.2e-34 147.1 98 70.4
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 7.2e-34 147.1 98 66.3
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 1.8e-32 142.5 80 81.2
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.1e-31 139.8 80 81.2
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 1.1e-31 139.8 79 83.5
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.5e-31 139.4 98 68.4
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.5e-31 138.7 89 75.3
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 3.3e-31 138.3 98 73.5
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 3.3e-31 138.3 98 73.5
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 7.4e-31 137.1 98 72.4
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 9.7e-31 136.7 93 68.8
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 6.3e-30 134.0 136 60.3
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.4e-29 132.9 77 79.2
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 4.5e-28 127.9 93 60.2
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 7.7e-28 127.1 98 57.1
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 3.8e-27 124.8 91 61.5
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 6.1e-25 117.5 81 67.9
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 2.5e-23 112.1 98 60.2
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 7.4e-23 110.5 63 81.0
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 9.7e-23 110.2 98 63.3
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.0e-19 100.1 57 80.7
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 3.2e-18 95.1 50 88.0
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 4.2e-18 94.7 97 44.3
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 1.6e-17 92.8 47 89.4
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 1.6e-17 92.8 47 89.4
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 3.6e-17 91.7 62 64.5
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 2.2e-14 82.4 52 71.2
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 4.5e-12 74.7 53 62.3
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 4.2e-10 68.2 35 85.7
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.2e-10 67.4 35 80.0
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 1.2e-09 66.6 51 68.6
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 8.8e-08 60.5 41 68.3


User provided reference genes

Program Settings