Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16006 Brassica carinata HOM05D003604 ORTHO05D004110 6.4e-113 411.0 243 100.0
A05p02960 Brassica napus HOM05D003604 ORTHO05D016132 8.8e-38 161.4 169 67.5
A09p03180 Brassica napus HOM05D003604 ORTHO05D004110 3.5e-34 149.4 248 50.8
C02p37610 Brassica napus HOM05D003604 ORTHO05D004110 4.5e-34 149.1 122 86.9
BcaC03g16005 Brassica carinata HOM05D003604 ORTHO05D004110 1.5e-29 134.0 205 45.9
BcaC05g28687 Brassica carinata HOM05D003604 ORTHO05D004110 1.5e-29 134.0 222 42.3
Phvul.011G146000 Phaseolus vulgaris HOM05D003604 ORTHO05D004110 4.1e-27 125.9 203 41.9
BcaB06g26132 Brassica carinata HOM05D003604 ORTHO05D004110 1.3e-25 120.9 225 40.9
BcaC05g28298 Brassica carinata HOM05D003604 ORTHO05D004110 1.3e-25 120.9 225 40.9
A05p28150 Brassica napus HOM05D003604 ORTHO05D004110 1.3e-25 120.9 225 40.9
BolC5t33080H Brassica oleracea HOM05D003604 ORTHO05D004110 1.3e-25 120.9 225 40.9
BraA05t21698Z Brassica rapa HOM05D003604 ORTHO05D004110 1.3e-25 120.9 225 40.9
BcaB04g20641 Brassica carinata HOM05D003604 ORTHO05D004110 1.7e-25 120.6 225 40.4
BcaC09g49007 Brassica carinata HOM05D003604 ORTHO05D004110 1.7e-25 120.6 225 40.4
C01p43560 Brassica napus HOM05D003604 ORTHO05D004110 1.7e-25 120.6 225 40.4
BolC1t04317H Brassica oleracea HOM05D003604 ORTHO05D004110 1.7e-25 120.6 225 40.4
Sp3g18690 Schrenkiella parvula HOM05D003604 ORTHO05D004110 2.3e-25 120.2 225 40.4
C05p43600 Brassica napus HOM05D003604 ORTHO05D004110 2.9e-25 119.8 225 40.4
A01p34140 Brassica napus HOM05D003604 ORTHO05D004110 5.0e-25 119.0 225 40.0
BraA01t03518Z Brassica rapa HOM05D003604 ORTHO05D004110 5.0e-25 119.0 225 40.0
Thhalv10020966m.g Eutrema salsugineum HOM05D003604 ORTHO05D004110 5.0e-25 119.0 225 40.4
AL3G34530 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 8.6e-25 118.2 225 40.0
Carub.0003s2063 Capsella rubella HOM05D003604 ORTHO05D004110 8.6e-25 118.2 225 40.0
THA.LOC104817889 Tarenaya hassleriana HOM05D003604 ORTHO05D004110 8.6e-25 118.2 225 38.2
CARHR096460 Cardamine hirsuta HOM05D003604 ORTHO05D004110 1.1e-24 117.9 225 39.6
BolC5t33544H Brassica oleracea HOM05D003604 ORTHO05D004110 1.9e-24 117.1 113 85.0
Aa31LG10G3370 Aethionema arabicum HOM05D003604 ORTHO05D004110 3.3e-24 116.3 225 39.1
AT3G20650 Arabidopsis thaliana HOM05D003604 ORTHO05D004110 3.3e-24 116.3 225 39.6
Cfa020470 Carpinus fangiana HOM05D003604 ORTHO05D004110 2.1e-23 113.6 224 37.5
PGR031G2944 Punica granatum HOM05D003604 ORTHO05D004110 2.1e-23 113.6 237 37.6
Duzib268G0095 Durio zibethinus HOM05D003604 ORTHO05D004110 2.8e-23 113.2 237 35.9
Cpa.g.sc80.125 Carica papaya HOM05D003604 ORTHO05D004110 4.7e-23 112.5 237 37.6
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 1.0e-22 111.3 220 37.3
arahy.Tifrunner.gnm1.ann1.QJA41V Arachis hypogaea HOM05D003604 ORTHO05D004110 1.0e-22 111.3 220 37.3
Ciclev10008689m.g Citrus clementina HOM05D003604 ORTHO05D004110 1.0e-22 111.3 237 36.3
Duzib213G0846 Durio zibethinus HOM05D003604 ORTHO05D004110 1.4e-22 110.9 237 35.4
Glyma.08G209500 Glycine max HOM05D003604 ORTHO05D004110 1.4e-22 110.9 237 36.7
arahy.Tifrunner.gnm1.ann1.R4IE40 Arachis hypogaea HOM05D003604 ORTHO05D004110 1.8e-22 110.5 220 37.3
Lalb_Chr03g0030231 Lupinus albus HOM05D003604 ORTHO05D004110 1.8e-22 110.5 237 36.7
ClCG05G014980 Citrullus lanatus HOM05D003604 ORTHO05D004110 2.3e-22 110.2 225 36.0
COL.COLO4_09536 Corchorus olitorius HOM05D003604 ORTHO05D004110 2.3e-22 110.2 237 35.9
Gohir.A13G142800 Gossypium hirsutum HOM05D003604 ORTHO05D004110 3.0e-22 109.8 237 35.4
HanXRQChr13g0407501 Helianthus annuus HOM05D003604 ORTHO05D004110 3.0e-22 109.8 225 36.9
arahy.Tifrunner.gnm1.ann1.B3WQY9 Arachis hypogaea HOM05D003604 ORTHO05D004110 4.0e-22 109.4 237 35.9
CsaV3_3G022660 Cucumis sativus L. HOM05D003604 ORTHO05D004110 4.0e-22 109.4 237 36.7
MELO3C018155.2 Cucumis melo HOM05D003604 ORTHO05D004110 5.2e-22 109.0 237 36.3
Lalb_Chr01g0006251 Lupinus albus HOM05D003604 ORTHO05D004110 5.2e-22 109.0 237 36.7
Gorai.013G165200 Gossypium raimondii HOM05D003604 ORTHO05D004110 6.8e-22 108.6 237 35.0
Thecc.07G059200 Theobroma cacao HOM05D003604 ORTHO05D004110 6.8e-22 108.6 237 35.9
arahy.Tifrunner.gnm1.ann1.6T0369 Arachis hypogaea HOM05D003604 ORTHO05D004110 8.9e-22 108.2 209 39.2
MD11G1230000 Malus domestica HOM05D003604 ORTHO05D004110 8.9e-22 108.2 237 35.9
Manes.14G113200 Manihot esculenta HOM05D003604 ORTHO05D004110 8.9e-22 108.2 237 35.4
RcHm_v2.0_Chr5g0036961 Rosa chinensis HOM05D003604 ORTHO05D004110 8.9e-22 108.2 237 35.9
VMungo1127G0543 Vigna mungo HOM05D003604 ORTHO05D004110 8.9e-22 108.2 237 35.4
CSS0036620 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 1.2e-21 107.8 237 35.4
CSS0043024 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 1.2e-21 107.8 237 35.4
Eucgr.F03392 Eucalyptus grandis HOM05D003604 ORTHO05D004110 1.2e-21 107.8 237 35.0
Sed0007679 Sechium edule HOM05D003604 ORTHO05D004110 1.2e-21 107.8 237 35.4
TWI38G1923 Tripterygium wilfordii HOM05D003604 ORTHO05D004110 1.2e-21 107.8 237 35.4
Glyma.06G263000 Glycine max HOM05D003604 ORTHO05D004110 1.5e-21 107.5 237 36.3
Medtr7g110030 Medicago truncatula HOM05D003604 ORTHO05D004110 1.5e-21 107.5 236 36.0
TPR.G4607 Trifolium pratense HOM05D003604 ORTHO05D004110 1.5e-21 107.5 236 36.0
Ca_26239_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 2.0e-21 107.1 236 35.6
Ca_30045_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 2.0e-21 107.1 236 35.6
ECA240G0441 Erigeron canadensis HOM05D003604 ORTHO05D004110 2.0e-21 107.1 225 35.6
Medtr6g003920 Medicago truncatula HOM05D003604 ORTHO05D004110 2.0e-21 107.1 236 36.0
Sed0017338 Sechium edule HOM05D003604 ORTHO05D004110 2.0e-21 107.1 237 35.9
TAR624G0573 Trochodendron aralioides HOM05D003604 ORTHO05D004110 2.0e-21 107.1 237 35.4
Atru.chr2.3114 Acer truncatum HOM05D003604 ORTHO05D004110 2.6e-21 106.7 237 36.3
Atru.chr2.3131 Acer truncatum HOM05D003604 ORTHO05D004110 2.6e-21 106.7 237 36.3
BraA07t29088Z Brassica rapa HOM05D003604 ORTHO05D016132 2.6e-21 106.7 113 71.7
FvH4_3g21511 Fragaria vesca HOM05D003604 ORTHO05D004110 2.6e-21 106.7 237 35.4
FAN11G1546 Fragaria x ananassa HOM05D000073 ORTHO05D004110 2.6e-21 106.7 237 35.4
FAN25G2942 Fragaria x ananassa HOM05D000073 ORTHO05D004110 2.6e-21 106.7 237 35.4
MD03G1215400 Malus domestica HOM05D003604 ORTHO05D004110 2.6e-21 106.7 237 35.4
Psat7g153240 Pisum sativum HOM05D003604 ORTHO05D004110 2.6e-21 106.7 236 35.6
Lj8C164T0 Lonicera japonica HOM05D003604 ORTHO05D004110 3.4e-21 106.3 237 35.0
GSVIVG01014550001 Vitis vinifera HOM05D003604 ORTHO05D004110 3.4e-21 106.3 237 35.0
CiPaw.12G124800 Carya illinoinensis HOM05D003604 ORTHO05D004110 4.4e-21 105.9 225 35.1
Haze_09573 Corylus avellana HOM05D003604 ORTHO05D004110 4.4e-21 105.9 237 35.4
Peaxi162Scf00141g00107 Petunia axillaris HOM05D003604 ORTHO05D004110 9.8e-21 104.8 220 35.0
Hund23359 Selenicereus undatus HOM05D003604 ORTHO05D004110 9.8e-21 104.8 230 36.1
CDE05G1290 Ceratophyllum demersum HOM05D003604 ORTHO05D004110 1.3e-20 104.4 225 35.1
FvH4_6g24821 Fragaria vesca HOM05D003604 ORTHO05D004110 1.7e-20 104.0 237 35.4
Lj1g0019007 Lotus japonicus HOM05D003604 ORTHO05D004110 1.7e-20 104.0 237 35.0
Nn2g10854 Nelumbo nucifera HOM05D003604 ORTHO05D004110 1.7e-20 104.0 237 34.2
Cc05_g12990 Coffea canephora HOM05D003604 ORTHO05D004110 2.2e-20 103.6 237 33.8
Gohir.A01G072200 Gossypium hirsutum HOM05D003604 ORTHO05D004110 2.2e-20 103.6 237 34.6
SGA_v2.0_scaffold9G05001 Striga asiatica HOM05D003604 ORTHO05D004110 2.2e-20 103.6 238 35.7
RcHm_v2.0_Chr1g0332461 Rosa chinensis HOM05D003604 ORTHO05D004110 2.8e-20 103.2 243 34.6
Nitab4.5_0000335g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 3.7e-20 102.8 237 34.2
PSO832G4297 Papaver somniferum HOM05D003604 ORTHO05D004110 3.7e-20 102.8 237 34.6
AL1G58850 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 4.9e-20 102.4 225 35.1
CAN.G5.14 Capsicum annuum HOM05D003604 ORTHO05D004110 4.9e-20 102.4 237 33.8
Nitab4.5_0000511g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 4.9e-20 102.4 237 33.8
QL08p014504 Quercus lobata HOM05D003604 ORTHO05D004110 4.9e-20 102.4 237 34.2
CSS0042481 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 6.3e-20 102.1 237 35.0
Lsat_1_v5_gn_9_94841 Lactuca sativa HOM05D003604 ORTHO05D004110 6.3e-20 102.1 244 34.0
PSO210G6085 Papaver somniferum HOM05D003604 ORTHO05D004110 6.3e-20 102.1 237 34.6
Solyc09g005300.3 Solanum lycopersicum HOM05D003604 ORTHO05D004110 6.3e-20 102.1 237 33.8
Sopen09g001270 Solanum pennellii HOM05D003604 ORTHO05D004110 6.3e-20 102.1 237 33.8
Actinidia00329 Actinidia chinensis HOM05D003604 ORTHO05D004110 8.3e-20 101.7 237 34.2
BolC2t09773H Brassica oleracea HOM05D003604 ORTHO05D004110 8.3e-20 101.7 53 90.6
CANSAT11G1782 Cannabis sativa HOM05D003604 ORTHO05D004110 8.3e-20 101.7 237 33.3
Lj3g0004246 Lotus japonicus HOM05D003604 ORTHO05D004110 8.3e-20 101.7 237 34.6
Sc03g0009420 Simmondsia chinensis HOM05D003604 ORTHO05D004110 8.3e-20 101.7 225 34.7
Solyc03g118250.4 Solanum lycopersicum HOM05D003604 ORTHO05D004110 8.3e-20 101.7 237 33.8
Hma1.2p1_0456F.1_g156560 Hydrangea macrophylla HOM05D003604 ORTHO05D004110 1.1e-19 101.3 237 34.6
vmacro01905 Vaccinium macrocarpon HOM05D003604 ORTHO05D004110 1.1e-19 101.3 237 34.6
Migut.H01877 Erythranthe guttata HOM05D003604 ORTHO05D004110 1.4e-19 100.9 237 34.6
MBI18_g38395_MAGBIO Magnolia biondii HOM05D003604 ORTHO05D004110 2.4e-19 100.1 232 34.1
Sopen03g037160 Solanum pennellii HOM05D003604 ORTHO05D004110 2.4e-19 100.1 237 33.3
Aqoxy1G03843 Aquilegia oxysepala HOM05D003604 ORTHO05D004110 4.1e-19 99.4 237 34.2
Gorai.002G080000 Gossypium raimondii HOM05D003604 ORTHO05D004110 4.1e-19 99.4 237 33.8
DCAR_010007 Daucus carota HOM05D003604 ORTHO05D004110 5.4e-19 99.0 237 33.3
Zm00001eb054690 Zea mays HOM05D003604 ORTHO05D004110 5.4e-19 99.0 236 33.1
Gohir.D01G059000 Gossypium hirsutum HOM05D003604 ORTHO05D004110 7.0e-19 98.6 237 33.3
Os08g0180000 Oryza sativa ssp. japonica HOM05D003604 ORTHO05D004110 9.2e-19 98.2 236 33.5
CARHR041070 Cardamine hirsuta HOM05D003604 ORTHO05D004110 2.0e-18 97.1 225 35.1
Potri.011G130100 Populus trichocarpa HOM05D003604 ORTHO05D004110 3.5e-18 96.3 237 33.8
CAN.G843.15 Capsicum annuum HOM05D003604 ORTHO05D004110 1.0e-17 94.7 237 32.5
ATR0721G088 Amborella trichopoda HOM05D003604 ORTHO05D004110 1.3e-17 94.4 223 32.3
Sabra11G0117500 Salix brachista HOM05D003604 ORTHO05D004110 2.3e-17 93.6 246 32.9
Oeu005439.1 Olea europaea HOM05D003604 ORTHO05D004110 2.9e-17 93.2 237 32.9
AUR62029271 Chenopodium quinoa HOM05D003604 ORTHO05D004110 1.5e-16 90.9 232 31.9
PSO541G3797 Papaver somniferum HOM05D003604 ORTHO05D004110 4.3e-16 89.4 232 31.9
AUR62041148 Chenopodium quinoa HOM05D003604 ORTHO05D004110 1.2e-15 87.8 239 30.5
EL10Ac4g08013 Beta vulgaris HOM05D003604 ORTHO05D004110 1.6e-15 87.4 237 32.5
Oeu060531.1 Olea europaea HOM05D003604 ORTHO05D004110 2.8e-15 86.7 237 33.3
SHI31882 Sapria himalayana HOM05D003604 ORTHO05D004110 3.6e-15 86.3 247 29.1
PSO675G0229 Papaver somniferum HOM05D003604 ORTHO05D004110 4.7e-15 85.9 225 31.6
BolC5t33545H Brassica oleracea HOM05D003604 ORTHO05D004110 6.1e-15 85.5 44 90.9
HPP92_020594 Vanilla planifolia HOM05D003604 ORTHO05D004110 1.4e-14 84.3 225 32.4
BolC5t33536H Brassica oleracea HOM05D003604 ORTHO05D004110 2.3e-14 83.6 44 88.6
AUR62034817 Chenopodium quinoa HOM05D003604 ORTHO05D004110 5.2e-14 82.4 231 30.3
FAN16G3577 Fragaria x ananassa HOM05D003604 ORTHO05D004110 8.9e-14 81.6 44 81.8
FAN24G0344 Fragaria x ananassa HOM05D003604 ORTHO05D004110 3.4e-13 79.7 213 31.5
AUR62029554 Chenopodium quinoa HOM05D003604 ORTHO05D004110 7.5e-13 78.6 248 29.0
DCAR_022503 Daucus carota HOM05D003604 ORTHO05D004110 7.5e-13 78.6 253 29.6
Manes.06G031600 Manihot esculenta HOM05D003604 ORTHO05D004110 9.8e-13 78.2 43 81.4
FvH4_2g07500 Fragaria vesca HOM05D003604 ORTHO05D004110 1.7e-12 77.4 213 31.0
FAN15G1062 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.7e-12 77.4 212 31.1
FAN22G2085 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.7e-12 77.4 212 31.1
FAN24G1060 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.2e-12 77.0 213 31.0
FvH4_1g24830 Fragaria vesca HOM05D003604 ORTHO05D004110 4.9e-12 75.9 212 32.1
FAN15G2058 Fragaria x ananassa HOM05D003604 ORTHO05D004110 4.9e-12 75.9 212 30.2
Mapoly0053s0007 Marchantia polymorpha HOM05D003604 ORTHO05D004110 4.9e-12 75.9 226 29.2
FAN24G2186 Fragaria x ananassa HOM05D003604 ORTHO05D004110 6.4e-12 75.5 212 30.7
FvH4_1g24790 Fragaria vesca HOM05D003604 ORTHO05D004110 8.3e-12 75.1 214 30.8
FAN19G0122 Fragaria x ananassa HOM05D003604 ORTHO05D004110 8.3e-12 75.1 214 30.8
FAN23G2626 Fragaria x ananassa HOM05D003604 ORTHO05D004110 3.2e-11 73.2 180 32.2
Pp3c23_20110 Physcomitrium patens HOM05D003604 ORTHO05D004110 5.4e-11 72.4 225 28.0
FAN19G2257 Fragaria x ananassa HOM05D003604 ORTHO05D004110 7.0e-11 72.0 214 30.4
FvH4_2g07560 Fragaria vesca HOM05D003604 ORTHO05D004110 1.2e-10 71.2 168 33.9
FvH4_2g07570 Fragaria vesca HOM05D003604 ORTHO05D004110 1.2e-10 71.2 168 33.9
SalBow7G1717 Salvia bowleyana HOM05D003604 ORTHO05D004110 1.6e-10 70.9 44 77.3
BolC4t23532H Brassica oleracea HOM05D010573 ORTHO05D016132 2.7e-10 70.1 85 82.4
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 1.0e-09 68.2 40 82.5
SMO266G0094 Selaginella moellendorffii HOM05D003604 ORTHO05D004110 3.9e-09 66.2 219 27.9
FvH4_2g07650 Fragaria vesca HOM05D003604 ORTHO05D004110 8.6e-09 65.1 142 34.5
TAR626G0206 Trochodendron aralioides HOM05D003604 ORTHO05D004110 3.3e-08 63.2 152 31.6
BolC5t33535H Brassica oleracea HOM05D010573 ORTHO05D016132 5.6e-08 62.4 82 81.7
Dinv22327 Davidia involucrata HOM05D003604 ORTHO05D004110 7.3e-08 62.0 133 35.3
FvH4_2g07580 Fragaria vesca HOM05D003604 ORTHO05D004110 1.2e-07 61.2 200 29.0
CBR_g12774 Chara braunii HOM05D003604 ORTHO05D004110 4.7e-07 59.3 223 24.7
Prupe.4G197400 Prunus persica HOM05D003604 ORTHO05D004110 6.2e-07 58.9 133 35.3
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 8.0e-07 58.5 121 37.2
BraA07t29089Z Brassica rapa HOM05D003604 ORTHO05D004110 2.3e-06 57.0 47 63.8
CiPaw.11G180300 Carya illinoinensis HOM05D003604 ORTHO05D004110 4.0e-06 56.2 133 33.8
PGSC0003DMG400023083 Solanum tuberosum HOM05D003604 ORTHO05D004110 4.0e-06 56.2 131 33.6


User provided reference genes

Program Settings