Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 1.0e-142 510.0 249 100.0
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 2.0e-141 505.8 247 100.0
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 1.7e-140 502.7 247 98.8
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 2.8e-140 501.9 247 98.8
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 4.8e-140 501.1 247 98.4
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 1.1e-136 490.0 247 96.0
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 4.7e-135 484.6 247 95.1
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 4.7e-135 484.6 247 95.1
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 4.7e-135 484.6 247 95.1
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 7.9e-135 483.8 247 95.1
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 7.9e-135 483.8 247 95.1
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 7.9e-135 483.8 247 95.1
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 1.8e-134 482.6 247 93.9
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 8.8e-134 480.3 247 93.9
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 1.5e-133 479.6 247 93.5
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 4.4e-133 478.0 247 93.5
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 2.2e-132 475.7 247 92.3
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 2.2e-132 475.7 247 92.3
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 8.2e-132 473.8 247 92.7
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 3.1e-131 471.9 247 90.7
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 5.0e-129 464.5 247 90.3
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 1.6e-127 459.5 278 82.0
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 2.7e-127 458.8 247 88.7
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 8.2e-124 447.2 247 85.0
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.1e-123 446.8 247 85.8
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 1.3e-121 439.9 247 83.8
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 1.9e-120 436.0 244 84.0
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 2.1e-119 432.6 247 83.0
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 2.1e-119 432.6 244 82.8
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 6.1e-119 431.0 244 83.2
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.4e-118 429.9 244 82.4
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 1.8e-118 429.5 247 82.2
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 2.3e-118 429.1 247 82.2
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 4.0e-118 428.3 247 82.2
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.0e-118 428.3 244 82.4
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 5.2e-118 427.9 247 81.0
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 6.8e-118 427.6 245 82.4
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 1.2e-117 426.8 247 81.8
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 1.5e-117 426.4 247 81.4
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 1.5e-117 426.4 247 81.0
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.6e-117 425.6 247 81.0
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 2.6e-117 425.6 247 81.0
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 5.7e-117 424.5 244 81.1
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 5.7e-117 424.5 244 81.1
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 5.7e-117 424.5 244 81.1
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 7.5e-117 424.1 244 82.0
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 9.8e-117 423.7 244 81.6
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 9.8e-117 423.7 247 80.6
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 1.7e-116 422.9 247 80.2
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 2.2e-116 422.5 244 82.0
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.8e-116 422.2 247 80.6
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 4.8e-116 421.4 247 79.4
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 6.3e-116 421.0 244 79.9
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 6.3e-116 421.0 243 82.3
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 1.1e-115 420.2 248 80.2
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 1.1e-115 420.2 247 80.6
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 1.1e-115 420.2 247 79.8
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.1e-115 420.2 244 79.5
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 1.4e-115 419.9 247 80.6
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 2.4e-115 419.1 261 77.8
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 2.4e-115 419.1 247 80.2
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 3.1e-115 418.7 243 80.7
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 4.1e-115 418.3 247 78.1
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 5.4e-115 417.9 245 80.0
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 5.4e-115 417.9 242 81.0
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 7.0e-115 417.5 247 79.8
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 7.0e-115 417.5 244 80.3
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 9.1e-115 417.2 247 78.5
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 9.1e-115 417.2 244 81.6
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 9.1e-115 417.2 247 79.8
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 9.1e-115 417.2 243 80.2
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 9.1e-115 417.2 244 80.3
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 1.6e-114 416.4 244 79.5
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 2.7e-114 415.6 243 81.1
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 2.7e-114 415.6 246 80.1
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 3.5e-114 415.2 243 81.1
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 4.5e-114 414.8 247 81.0
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 4.5e-114 414.8 247 79.4
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 5.9e-114 414.5 247 80.2
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 1.3e-113 413.3 245 79.6
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 1.7e-113 412.9 243 80.7
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 2.9e-113 412.1 245 78.8
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 2.9e-113 412.1 243 80.7
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 3.8e-113 411.8 247 80.2
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 3.8e-113 411.8 246 79.3
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 3.8e-113 411.8 243 79.0
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 3.8e-113 411.8 245 78.4
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 3.8e-113 411.8 247 78.5
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 5.0e-113 411.4 247 78.1
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 6.5e-113 411.0 247 78.5
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 6.5e-113 411.0 243 80.2
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 8.6e-113 410.6 259 76.1
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 8.6e-113 410.6 249 78.7
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 1.1e-112 410.2 269 74.3
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 2.5e-112 409.1 247 76.9
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 2.5e-112 409.1 244 78.3
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 5.5e-112 407.9 247 77.3
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 1.2e-111 406.8 245 77.6
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 1.2e-111 406.8 242 77.3
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 2.1e-111 406.0 261 75.9
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 2.8e-111 405.6 247 78.1
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 3.6e-111 405.2 247 76.9
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 8.0e-111 404.1 247 76.1
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.4e-110 403.3 268 72.4
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 1.8e-110 402.9 243 76.1
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 1.8e-110 402.9 245 78.0
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 3.0e-110 402.1 247 76.9
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 6.8e-110 401.0 255 76.5
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 8.8e-110 400.6 243 77.4
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 8.8e-110 400.6 245 77.1
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 8.8e-110 400.6 247 75.7
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 4.4e-109 398.3 244 78.7
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 3.7e-108 395.2 244 79.5
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 9.2e-107 390.6 248 73.8
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 2.0e-106 389.4 232 80.6
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 1.3e-105 386.7 243 74.9
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 6.6e-105 384.4 248 72.6
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 1.1e-104 383.6 242 75.2
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 8.9e-102 374.0 243 70.8
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.3e-100 370.2 245 70.6
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 2.1e-95 352.8 199 82.4
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 2.8e-95 352.4 243 65.8
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 1.5e-93 346.7 246 67.1
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 1.7e-92 343.2 243 65.0
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 8.3e-92 340.9 182 87.4
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 6.0e-90 334.7 245 66.9
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 1.5e-88 330.1 243 62.1
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 6.2e-87 324.7 243 60.5
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 2.0e-85 319.7 243 60.5
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 2.2e-84 316.2 243 58.0
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.3e-81 306.2 213 68.1
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 1.9e-80 303.1 265 61.5
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 5.6e-72 275.0 244 52.0
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 9.9e-69 264.2 243 53.9
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 7.3e-64 248.1 144 80.6
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 3.1e-62 242.7 243 50.2
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 5.3e-62 241.9 147 78.9
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 6.9e-54 214.9 149 68.5
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 9.7e-40 167.9 151 59.6
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 1.5e-37 160.6 162 45.1
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 7.6e-37 158.3 162 44.4
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.4e-35 154.1 126 61.9
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 9.4e-35 151.4 166 49.4
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 4.6e-34 149.1 143 58.0
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 8.2e-31 138.3 89 77.5
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 1.0e-28 131.3 79 77.2
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 1.3e-23 114.4 70 68.6
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 5.9e-21 105.5 126 45.2
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 3.7e-15 86.3 66 69.7
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 1.4e-14 84.3 82 48.8


User provided reference genes

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