Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 2504.9 1319 100.0
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 2499.9 1321 99.8
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 2444.8 1319 97.8
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 2427.1 1319 97.4
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 2418.7 1319 97.0
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 2268.0 1322 90.1
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 2094.7 1342 83.2
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 2067.7 1345 83.2
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 2065.4 1344 83.1
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1885.5 1352 75.7
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1709.5 1351 68.7
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 0.0e+00 1687.2 1010 87.6
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1435.2 1378 57.6
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1411.4 1357 57.0
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1410.6 1359 57.0
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1409.0 1366 57.8
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1407.5 1359 57.0
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1402.5 1357 57.1
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1400.6 1350 56.7
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1398.6 1353 57.9
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1388.2 1388 57.2
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1384.0 1369 57.0
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1372.1 1370 55.4
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1361.7 1357 56.4
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1350.5 1400 53.9
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1338.6 1436 52.7
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1327.4 1332 55.9
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1324.7 1378 54.8
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1316.6 1347 54.5
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 0.0e+00 1312.7 803 85.8
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1310.4 1345 54.3
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1308.9 1352 54.4
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1300.0 1350 55.0
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1298.1 1360 52.7
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1296.6 1399 52.9
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1295.0 1379 53.0
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1289.6 1379 52.8
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1287.3 1355 53.6
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1282.3 1432 51.4
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1280.0 1346 54.2
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1278.5 1378 53.1
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1270.4 1306 54.3
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1266.1 1372 52.3
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1265.4 1362 52.6
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1265.4 1364 52.6
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1263.8 1364 51.9
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1262.3 1312 53.4
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1261.5 1358 53.1
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1259.6 1359 51.9
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1256.9 1383 52.0
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1256.5 1389 52.0
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1256.5 1376 51.8
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1254.2 1402 49.8
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1251.1 1204 56.6
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1249.6 1371 52.2
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1247.3 1344 52.9
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1247.3 1362 53.7
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1246.5 1333 51.8
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1245.3 1339 52.6
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1242.6 1337 53.0
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1232.2 1325 52.1
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1230.3 1352 51.7
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1225.3 1354 52.1
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1219.1 1354 51.1
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1213.4 1326 52.8
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1201.4 1385 50.1
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1201.4 1393 48.7
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 0.0e+00 1195.6 727 86.1
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1188.3 1464 47.8
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1180.2 1379 49.0
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1179.5 1368 49.3
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1164.8 1359 50.2
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1162.9 1340 49.9
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1137.9 1535 45.6
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1122.1 1367 48.4
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1115.9 1379 45.8
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1094.3 1126 54.9
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1078.9 1350 47.4
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1077.4 1591 43.6
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 3.6e-311 1072.0 1359 48.1
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 9.9e-309 1063.9 1360 45.8
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.1e-288 997.3 1093 51.6
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 2.0e-269 933.3 981 54.4
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 3.8e-260 902.5 1136 45.4
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 4.7e-250 869.0 1009 50.4
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 8.8e-249 864.8 1028 48.1
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 1.7e-247 860.5 1335 41.1
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.9e-219 767.3 541 78.2
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 2.1e-218 763.8 718 57.5
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 7.0e-214 748.8 538 76.4
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.9e-211 740.7 830 51.2
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 2.1e-197 694.1 809 48.5
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 1.9e-171 607.8 1331 34.9
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 3.6e-170 603.6 1372 32.5
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.0e-151 542.3 1408 30.4
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 2.2e-151 541.2 528 54.7
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 2.2e-138 498.0 589 50.4
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.7e-138 497.3 447 60.4
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 6.9e-137 493.0 448 61.6
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.9e-134 485.0 667 43.2
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 2.4e-121 441.4 399 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 3.6e-117 427.6 996 32.4
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 1.4e-113 415.6 344 63.4
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.2e-100 370.5 471 43.3
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 4.3e-86 324.3 539 41.4
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 5.4e-81 307.4 354 51.1
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.2e-80 306.2 278 57.9
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 5.6e-78 297.4 714 33.9
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.5e-67 262.7 357 45.9
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 9.9e-67 260.0 443 37.9
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.7e-66 259.2 464 37.7
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 1.6e-64 252.7 178 81.5
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.7e-58 232.6 159 71.7
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.1e-53 213.8 138 73.2
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 4.5e-51 208.0 230 53.0
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 1.6e-48 199.5 249 45.4
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 6.0e-48 197.6 1004 25.0
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 5.1e-47 194.5 149 66.4
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 1.1e-46 193.4 235 48.5
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 9.6e-46 190.3 144 66.7
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.1e-45 189.1 354 38.1
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 3.4e-43 181.8 287 39.4
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 6.5e-42 177.6 400 35.2
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 6.0e-40 171.0 1161 24.1
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 5.7e-38 164.5 183 52.5
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 4.8e-37 161.4 142 57.7
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.1e-33 150.2 193 48.2
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 7.2e-33 147.5 688 24.6
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 8.7e-31 140.6 215 45.6
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 7.7e-27 127.5 143 49.0
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.8e-23 114.0 85 64.7
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 8.8e-23 114.0 239 34.7
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 4.8e-21 108.2 90 60.0
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 4.8e-21 108.2 132 47.0
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 1.8e-20 106.3 413 26.6
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.4e-20 105.9 144 40.3
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 2.9e-18 99.0 148 41.2
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 2.9e-18 99.0 134 41.8
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 3.8e-18 98.6 99 48.5
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 6.5e-18 97.8 95 51.6
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 1.4e-17 96.7 178 40.4
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.2e-16 93.6 88 55.7
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.6e-16 93.2 124 48.4
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 3.0e-15 89.0 167 36.5
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 3.9e-15 88.6 67 67.2
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 6.7e-15 87.8 202 36.1
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 1.3e-10 73.6 56 66.1
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 3.8e-10 72.0 64 59.4
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.8e-10 72.0 113 38.9
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 8.5e-10 70.9 95 43.2
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 1.9e-09 69.7 80 43.8
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 1.6e-08 66.6 100 43.0
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 2.1e-08 66.2 69 52.2
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 3.6e-08 65.5 100 43.0
BcaC08g47482 Brassica carinata HOM05D000008 ORTHO05D000005 6.1e-08 64.7 40 85.0
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 1.4e-07 63.5 73 47.9
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 1.5e-06 60.1 89 42.7


User provided reference genes

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