Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 1.8e-232 808.9 404 100.0
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 2.1e-222 775.4 447 89.0
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.3e-219 766.1 447 88.1
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 3.1e-205 718.4 450 83.8
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 2.6e-204 715.3 451 83.1
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 3.6e-169 598.6 450 72.4
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 3.2e-157 558.9 480 66.2
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 3.2e-157 558.9 484 64.5
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 8.3e-142 507.7 457 61.3
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 8.6e-139 497.7 468 60.0
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 2.8e-137 492.7 480 58.3
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 1.4e-133 480.3 472 58.1
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 9.3e-117 424.5 474 51.7
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 2.1e-68 263.8 310 51.3
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 1.6e-44 184.5 443 33.2
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 1.8e-43 181.0 471 34.4
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 2.2e-41 174.1 472 33.1
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 7.0e-40 169.1 445 31.7
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 2.5e-37 160.6 437 31.6
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 3.6e-36 156.8 464 31.0
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 6.8e-35 152.5 457 31.1
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 8.9e-35 152.1 445 31.2
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 2.6e-34 150.6 447 30.0
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 5.8e-34 149.4 337 32.0
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 1.7e-33 147.9 240 41.2
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 2.9e-33 147.1 245 40.0
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 6.4e-33 146.0 260 36.9
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 8.3e-33 145.6 254 37.0
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 4.1e-32 143.3 264 38.3
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 5.4e-32 142.9 363 30.3
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 4.6e-31 139.8 250 38.4
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 6.0e-31 139.4 342 31.0
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 7.8e-31 139.0 281 34.9
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.3e-30 138.3 249 36.9
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 5.1e-30 136.3 336 35.7
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 6.6e-30 136.0 358 33.5
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 8.6e-30 135.6 279 34.4
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.1e-29 135.2 337 33.8
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 5.6e-29 132.9 248 37.5
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 9.5e-29 132.1 451 28.2
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 9.5e-29 132.1 248 37.5
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 3.6e-28 130.2 414 30.2
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 3.6e-28 130.2 257 36.2
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 3.6e-28 130.2 247 38.5
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 4.7e-28 129.8 423 28.4
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 8.1e-28 129.0 248 36.3
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 2.3e-27 127.5 278 34.5
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 2.3e-27 127.5 261 35.2
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 3.1e-27 127.1 338 31.7
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 6.8e-27 125.9 241 36.9
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 1.2e-26 125.2 255 37.6
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 2.0e-26 124.4 245 36.3
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 3.4e-26 123.6 474 28.3
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 5.8e-26 122.9 210 41.9
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 9.9e-26 122.1 336 31.8
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 1.3e-25 121.7 269 34.6
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 2.2e-25 120.9 337 31.5
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 6.4e-25 119.4 234 37.6
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.1e-24 118.6 234 33.3
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 1.1e-24 118.6 382 30.1
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.1e-24 118.6 378 29.4
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 3.2e-24 117.1 235 32.8
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 3.2e-24 117.1 328 30.8
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 4.1e-24 116.7 258 33.3
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 5.4e-24 116.3 364 29.9
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 5.4e-24 116.3 363 30.0
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 7.1e-24 115.9 244 35.2
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 1.6e-23 114.8 400 28.2
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 7.8e-23 112.5 156 43.6
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 1.0e-22 112.1 228 36.0
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.0e-22 112.1 368 29.1
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 1.3e-22 111.7 279 32.3
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 1.7e-22 111.3 252 34.1
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 5.1e-22 109.8 242 34.3
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 6.6e-22 109.4 267 34.1
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 8.6e-22 109.0 224 36.2
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 8.6e-22 109.0 247 30.0
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 4.3e-21 106.7 344 28.5
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 1.2e-20 105.1 183 37.2
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 1.6e-20 104.8 175 34.3
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 2.1e-20 104.4 301 27.2
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 2.8e-20 104.0 345 30.7
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 3.6e-20 103.6 164 37.2
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 2.4e-19 100.9 264 30.3
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 6.8e-19 99.4 175 37.7
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 8.9e-19 99.0 244 31.6
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 2.6e-18 97.4 189 34.9
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 4.4e-18 96.7 188 38.3
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 5.8e-18 96.3 174 38.5
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 7.6e-18 95.9 544 24.4
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.7e-17 94.7 186 33.3
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.7e-17 94.7 258 29.5
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 2.2e-17 94.4 297 28.3
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 2.2e-17 94.4 247 32.0
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 2.2e-17 94.4 193 32.1
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 3.8e-17 93.6 274 28.8
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 4.9e-17 93.2 182 34.6
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 5.4e-16 89.7 193 30.6
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 7.1e-16 89.4 279 29.0
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.2e-15 88.6 221 30.3
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 1.6e-15 88.2 209 30.6
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.7e-15 87.4 191 34.6
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 2.7e-15 87.4 177 36.7
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 4.6e-15 86.7 181 34.3
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 6.0e-15 86.3 88 45.5
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 7.8e-15 85.9 181 34.3
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.3e-14 85.1 224 28.6
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.3e-14 85.1 224 29.5
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 1.6e-12 78.2 177 32.8
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 3.6e-12 77.0 76 46.1
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 4.0e-11 73.6 184 34.2
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 9.0e-11 72.4 349 24.9
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 9.0e-11 72.4 82 41.5
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 5.8e-10 69.7 59 57.6
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 8.4e-09 65.9 167 30.5
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 2.4e-08 64.3 187 28.3
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 2.4e-08 64.3 106 36.8
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 7.1e-08 62.8 178 29.2
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 2.1e-07 61.2 130 29.2
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 4.6e-07 60.1 273 24.5
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 3.9e-06 57.0 234 26.9
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 6.6e-06 56.2 126 32.5


User provided reference genes

Program Settings