Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15816 Brassica carinata HOM05D000020 ORTHO05D001240 7.5e-55 216.9 103 100.0
C02p35610 Brassica napus HOM05D000020 ORTHO05D001240 2.3e-51 205.3 109 92.7
AL2G38920 Arabidopsis lyrata HOM05D000020 ORTHO05D001240 2.1e-12 75.9 38 92.1
Sp5g33610 Schrenkiella parvula HOM05D000020 ORTHO05D001240 2.1e-12 75.9 38 92.1
Carub.0002s2537 Capsella rubella HOM05D000020 ORTHO05D001240 4.6e-12 74.7 38 89.5
CARHR072010 Cardamine hirsuta HOM05D000020 ORTHO05D001240 6.0e-12 74.3 37 91.9
Thhalv10019333m.g Eutrema salsugineum HOM05D000020 ORTHO05D001240 6.0e-12 74.3 38 89.5
BolC6t40262H Brassica oleracea HOM05D000020 ORTHO05D001240 1.3e-11 73.2 37 89.2
BraA07t31887Z Brassica rapa HOM05D000020 ORTHO05D001240 1.3e-11 73.2 37 89.2
AT1G78520 Arabidopsis thaliana HOM05D000020 ORTHO05D001240 1.1e-10 70.1 36 88.9
BcaB05g25142 Brassica carinata HOM05D000020 ORTHO05D001240 1.1e-08 63.5 39 79.5
Cc05_g10520 Coffea canephora HOM05D000020 ORTHO05D001240 6.9e-08 60.8 36 77.8
CDE02G1277 Ceratophyllum demersum HOM05D000133 ORTHO05D000259 1.2e-07 60.1 35 80.0
CARHR138860 Cardamine hirsuta HOM05D000020 ORTHO05D001240 2.0e-07 59.3 37 73.0
Cpa.g.sc1272.1 Carica papaya HOM05D000020 ORTHO05D001240 2.6e-07 58.9 36 77.8
Peaxi162Scf00573g00058 Petunia axillaris HOM05D000020 ORTHO05D001240 2.6e-07 58.9 36 75.0
PGR031G2993 Punica granatum HOM05D000020 ORTHO05D001240 2.6e-07 58.9 35 74.3
TWI39G0863 Tripterygium wilfordii HOM05D000020 ORTHO05D001240 2.6e-07 58.9 36 75.0
HanXRQChr12g0382211 Helianthus annuus HOM05D000020 ORTHO05D001240 3.4e-07 58.5 37 67.6
CDE02G3256 Ceratophyllum demersum HOM05D000020 ORTHO05D001240 5.8e-07 57.8 35 77.1
Sopen10g003450 Solanum pennellii HOM05D000020 ORTHO05D001240 5.8e-07 57.8 36 75.0
Solyc10g007510.2 Solanum lycopersicum HOM05D000020 ORTHO05D001240 7.6e-07 57.4 36 75.0
TAR629G1827 Trochodendron aralioides HOM05D000020 ORTHO05D001240 7.6e-07 57.4 36 75.0
CAN.G904.28 Capsicum annuum HOM05D000020 ORTHO05D001240 9.9e-07 57.0 36 72.2
FAN21G3587 Fragaria x ananassa HOM05D000020 ORTHO05D001240 9.9e-07 57.0 89 38.2
CAN.G375.64 Capsicum annuum HOM05D000020 ORTHO05D001240 1.3e-06 56.6 36 69.4
THA.LOC104813986 Tarenaya hassleriana HOM05D000020 ORTHO05D001240 1.3e-06 56.6 36 72.2
TPR.G6838 Trifolium pratense HOM05D000020 ORTHO05D001240 1.3e-06 56.6 35 68.6
MSTRG.14993 Avicennia marina HOM05D000020 ORTHO05D001240 1.7e-06 56.2 36 72.2
COL.COLO4_17447 Corchorus olitorius HOM05D000020 ORTHO05D001240 1.7e-06 56.2 36 75.0
Potri.001G380600 Populus trichocarpa HOM05D000020 ORTHO05D001240 1.7e-06 56.2 35 71.4
Thecc.07G140400 Theobroma cacao HOM05D000020 ORTHO05D001240 1.7e-06 56.2 36 72.2
CANSAT56G1212 Cannabis sativa HOM05D000020 ORTHO05D001240 2.2e-06 55.8 35 71.4
FvH4_3g06030 Fragaria vesca HOM05D000020 ORTHO05D001240 2.2e-06 55.8 36 69.4
FAN11G3074 Fragaria x ananassa HOM05D000020 ORTHO05D001240 2.2e-06 55.8 36 69.4
FAN25G0841 Fragaria x ananassa HOM05D000020 ORTHO05D001240 2.2e-06 55.8 36 69.4
arahy.Tifrunner.gnm1.ann1.71RM0H Arachis hypogaea HOM05D000020 ORTHO05D001240 2.9e-06 55.5 35 68.6
arahy.Tifrunner.gnm1.ann1.YE4ZXC Arachis hypogaea HOM05D000020 ORTHO05D001240 2.9e-06 55.5 35 68.6
Lalb_Chr25g0285551 Lupinus albus HOM05D000020 ORTHO05D001240 2.9e-06 55.5 35 68.6
Nn3g20647 Nelumbo nucifera HOM05D000020 ORTHO05D001240 2.9e-06 55.5 37 67.6
Gohir.A01G045400 Gossypium hirsutum HOM05D000020 ORTHO05D001240 3.8e-06 55.1 36 72.2
Gohir.D05G336500 Gossypium hirsutum HOM05D000020 ORTHO05D001240 3.8e-06 55.1 35 74.3
Gorai.009G360300 Gossypium raimondii HOM05D000020 ORTHO05D001240 3.8e-06 55.1 35 74.3
Carub.0004s2621 Capsella rubella HOM05D000020 ORTHO05D001240 4.9e-06 54.7 37 62.2
FvH4_3g17340 Fragaria vesca HOM05D000020 ORTHO05D001240 4.9e-06 54.7 35 74.3
FAN11G0039 Fragaria x ananassa HOM05D000020 ORTHO05D001240 4.9e-06 54.7 35 74.3
FAN16G3180 Fragaria x ananassa HOM05D000020 ORTHO05D001240 4.9e-06 54.7 35 74.3
Gohir.A01G145590 Gossypium hirsutum HOM05D000020 ORTHO05D001240 4.9e-06 54.7 36 69.4
Gorai.002G044300 Gossypium raimondii HOM05D000020 ORTHO05D001240 4.9e-06 54.7 36 69.4
Lj3g0020764 Lotus japonicus HOM05D000020 ORTHO05D001240 4.9e-06 54.7 35 65.7
RcHm_v2.0_Chr5g0028861 Rosa chinensis HOM05D000020 ORTHO05D001240 4.9e-06 54.7 35 74.3
HPP92_026490 Vanilla planifolia HOM05D000020 ORTHO05D001240 4.9e-06 54.7 35 74.3
C06p52430 Brassica napus HOM05D000020 ORTHO05D001240 6.4e-06 54.3 29 89.7
CSS0018710 Camellia sinensis var. sinensis HOM05D000020 ORTHO05D001240 6.4e-06 54.3 36 69.4
Duzib213G0344 Durio zibethinus HOM05D000020 ORTHO05D001240 6.4e-06 54.3 36 69.4
Duzib242G0003 Durio zibethinus HOM05D000020 ORTHO05D001240 6.4e-06 54.3 36 69.4
Glyma.15G243000 Glycine max HOM05D000020 ORTHO05D001240 6.4e-06 54.3 35 65.7
Hma1.2p1_0713F.1_g207780 Hydrangea macrophylla HOM05D000020 ORTHO05D001240 6.4e-06 54.3 36 69.4
MBI10_g36390_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D001240 6.4e-06 54.3 35 71.4
RcHm_v2.0_Chr5g0013281 Rosa chinensis HOM05D000020 ORTHO05D001240 6.4e-06 54.3 36 69.4
GSVIVG01021412001 Vitis vinifera HOM05D000020 ORTHO05D001240 6.4e-06 54.3 37 67.6
AT2G43670 Arabidopsis thaliana HOM05D000020 ORTHO05D001240 8.4e-06 53.9 37 64.9
Eucgr.F01381 Eucalyptus grandis HOM05D000020 ORTHO05D001240 8.4e-06 53.9 35 62.9
Oeu005374.1 Olea europaea HOM05D000020 ORTHO05D001240 8.4e-06 53.9 35 65.7
Phvul.005G064400 Phaseolus vulgaris HOM05D000020 ORTHO05D001240 8.4e-06 53.9 35 65.7
PGR083G1626 Punica granatum HOM05D000020 ORTHO05D001240 8.4e-06 53.9 35 68.6


User provided reference genes

Program Settings