Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 8.0e-52 206.8 106 100.0
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 2.6e-42 175.3 107 85.0
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 1.4e-35 152.9 107 77.6
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 3.4e-34 148.3 107 75.7
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 3.4e-34 148.3 107 75.7
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 7.5e-34 147.1 107 74.8
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 7.0e-32 140.6 107 69.2
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 1.6e-31 139.4 107 69.2
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 7.8e-31 137.1 107 66.4
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 2.3e-30 135.6 107 67.3
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 5.0e-30 134.4 107 66.4
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 4.3e-29 131.3 107 64.5
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 2.1e-28 129.0 107 63.6
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 4.7e-28 127.9 101 66.3
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.8e-27 125.9 107 63.6
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 3.1e-27 125.2 108 63.9
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 8.9e-27 123.6 107 61.7
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.5e-26 122.9 107 61.7
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 1.5e-26 122.9 108 63.0
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 2.2e-25 119.0 108 62.0
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 2.2e-25 119.0 108 62.0
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 8.6e-22 107.1 105 53.3
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 2.5e-21 105.5 107 54.2
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 2.5e-21 105.5 107 52.3
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 5.6e-21 104.4 107 52.3
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 9.5e-21 103.6 107 49.5
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 9.5e-21 103.6 107 51.4
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 1.6e-20 102.8 107 50.5
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 2.1e-20 102.4 107 52.3
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 4.7e-20 101.3 109 52.3
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 6.2e-20 100.9 107 50.5
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 2.3e-19 99.0 107 48.6
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 3.1e-19 98.6 107 47.7
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 6.8e-19 97.4 107 46.7
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 1.2e-18 96.7 108 51.9
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 1.5e-18 96.3 108 49.1
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 2.0e-18 95.9 105 51.4
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 2.0e-18 95.9 107 49.5
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 7.5e-18 94.0 107 48.6
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 7.5e-18 94.0 107 47.7
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 1.3e-17 93.2 106 44.3
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 1.7e-17 92.8 107 49.5
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 2.2e-17 92.4 107 46.7
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 2.2e-17 92.4 109 48.6
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 2.9e-17 92.0 106 49.1
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 3.7e-17 91.7 105 43.8
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 4.9e-17 91.3 107 46.7
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 4.9e-17 91.3 105 44.8
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 4.9e-17 91.3 107 49.5
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 6.4e-17 90.9 107 43.0
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 6.4e-17 90.9 108 46.3
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 6.4e-17 90.9 108 46.3
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 8.3e-17 90.5 106 44.3
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 1.4e-16 89.7 107 47.7
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.4e-16 89.7 107 49.5
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 1.4e-16 89.7 105 42.9
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.4e-16 89.7 107 47.7
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 1.9e-16 89.4 107 43.0
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 1.9e-16 89.4 108 47.2
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 1.9e-16 89.4 106 45.3
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.4e-16 89.0 107 44.9
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.4e-16 89.0 107 48.6
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 4.1e-16 88.2 107 47.7
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 5.4e-16 87.8 107 46.7
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 7.1e-16 87.4 105 41.9
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 9.2e-16 87.0 106 44.3
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 9.2e-16 87.0 107 43.9
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 9.2e-16 87.0 107 45.8
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.2e-15 86.7 106 44.3
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.2e-15 86.7 107 47.7
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.6e-15 86.3 107 47.7
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 2.1e-15 85.9 107 46.7
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.7e-15 85.5 105 48.6
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 2.7e-15 85.5 107 46.7
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.7e-15 85.5 107 45.8
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 4.6e-15 84.7 107 44.9
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 6.0e-15 84.3 107 45.8
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 7.8e-15 84.0 107 44.9
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 7.8e-15 84.0 107 44.9
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 7.8e-15 84.0 107 45.8
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 1.0e-14 83.6 107 42.1
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.3e-14 83.2 107 44.9
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.7e-14 82.8 106 39.6
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 1.7e-14 82.8 105 42.9
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 5.1e-14 81.3 107 43.9
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 6.6e-14 80.9 107 46.7
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 6.6e-14 80.9 109 45.9
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 4.3e-13 78.2 106 42.5
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 4.3e-13 78.2 107 42.1
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 7.3e-13 77.4 106 42.5
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.6e-12 76.3 107 43.9
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 2.1e-12 75.9 107 45.8
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 6.2e-12 74.3 107 42.1
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 6.2e-12 74.3 107 43.0
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 2.3e-11 72.4 100 41.0
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 3.1e-11 72.0 107 42.1
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 3.1e-11 72.0 109 40.4
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 3.1e-11 72.0 107 44.9
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 5.2e-11 71.2 107 36.4
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 1.2e-10 70.1 105 38.1
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 4.4e-10 68.2 107 36.4
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.4e-08 63.2 106 35.8
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 3.2e-08 62.0 67 44.8
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 7.1e-08 60.8 106 34.0
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 7.1e-08 60.8 105 33.3
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 1.2e-07 60.1 106 35.8
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.7e-07 58.9 107 35.5
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 2.7e-07 58.9 67 44.8
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 3.5e-07 58.5 71 40.8
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 4.6e-07 58.2 107 31.8
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 7.8e-07 57.4 106 32.1
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 7.8e-07 57.4 106 32.1
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 6.6e-06 54.3 109 36.7


User provided reference genes

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