Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15654 Brassica carinata HOM05D008615 ORTHO05D027756 0.0e+00 1209.5 600 100.0
BolC2t09371H Brassica oleracea HOM05D008615 ORTHO05D027756 0.0e+00 1209.5 600 100.0
C02p33310 Brassica napus HOM05D008615 ORTHO05D027756 0.0e+00 1159.1 602 96.5
A02p20530 Brassica napus HOM05D008615 ORTHO05D027756 0.0e+00 1149.4 614 93.2
AL1G32050 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 3.9e-63 246.9 462 34.0
AL4G38000 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 8.0e-48 196.1 321 35.8
AL4G38030 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 8.0e-48 196.1 321 35.5
C04p31890 Brassica napus HOM05D008615 ORTHO05D011779 3.4e-46 190.7 234 41.9
AL5G23100 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 2.2e-45 188.0 257 42.8
Thhalv10000455m.g Eutrema salsugineum HOM05D008615 ORTHO05D011779 2.4e-44 184.5 239 41.4
BcaC07g39853 Brassica carinata HOM05D008615 ORTHO05D011779 5.9e-43 179.9 315 37.1
BcaC02g10180 Brassica carinata HOM05D008615 ORTHO05D011779 1.4e-36 158.7 234 39.7
BolC8t50672H Brassica oleracea HOM05D008615 ORTHO05D011779 6.6e-34 149.8 256 37.5
AL5G23010 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 1.8e-31 141.7 313 31.3
C01p09880 Brassica napus HOM05D008615 ORTHO05D011779 2.0e-30 138.3 302 31.1
BolC1t00951H Brassica oleracea HOM05D008615 ORTHO05D011779 2.0e-30 138.3 302 31.1
BraA01t00798Z Brassica rapa HOM05D008615 ORTHO05D011779 2.0e-30 138.3 302 31.5
BcaC09g52204 Brassica carinata HOM05D008615 ORTHO05D011779 7.5e-30 136.3 273 31.9
AL7G23550 Arabidopsis lyrata HOM05D008615 ORTHO05D021443 1.3e-29 135.6 267 32.6
Carub.0005s1047 Capsella rubella HOM05D008615 ORTHO05D021391 2.2e-29 134.8 319 31.0
BolC4t24741H Brassica oleracea HOM05D008615 ORTHO05D011779 3.7e-29 134.0 212 33.5
Thhalv10026918m.g Eutrema salsugineum HOM05D008615 ORTHO05D011779 2.7e-27 127.9 231 33.8
BcaNung01345 Brassica carinata HOM05D008615 ORTHO05D021443 2.9e-26 124.4 287 31.0
AL7G22840 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 8.6e-26 122.9 301 28.2
Carub.0007s1099 Capsella rubella HOM05D008615 ORTHO05D011779 8.9e-23 112.8 249 29.7
C08p30540 Brassica napus HOM05D008615 ORTHO05D011779 2.9e-21 107.8 139 42.4
BcaC09g51774 Brassica carinata HOM05D000574 ORTHO05D004834 8.3e-21 106.3 206 31.6
Carub.0007s2333 Capsella rubella HOM05D000344 ORTHO05D003292 1.9e-20 105.1 262 26.7
AL7G36450 Arabidopsis lyrata HOM05D013859 ORTHO05D018433 2.4e-20 104.8 316 25.6
BcaC09g51927 Brassica carinata HOM05D008615 ORTHO05D031979 9.2e-20 102.8 320 27.8
BcaC07g38434 Brassica carinata HOM05D011295 ORTHO05D014420 2.0e-19 101.7 245 29.4
C08p12010 Brassica napus HOM05D011295 ORTHO05D014420 2.0e-19 101.7 245 29.4
A01p08200 Brassica napus HOM05D000574 ORTHO05D004834 3.0e-18 97.8 205 30.7
BraA01t00766Z Brassica rapa HOM05D000574 ORTHO05D004834 3.0e-18 97.8 205 30.7
A08p35230 Brassica napus HOM05D011295 ORTHO05D014420 1.1e-17 95.9 246 27.6
BcaC03g15669 Brassica carinata HOM05D024680 ORTHO05D024444 5.6e-17 93.6 135 41.5
AT3G19515 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 1.2e-16 92.4 263 24.3
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.6e-16 92.0 200 29.5
A02p20640 Brassica napus HOM05D024680 ORTHO05D024444 3.6e-16 90.9 142 39.4
AL1G49360 Arabidopsis lyrata HOM05D011295 ORTHO05D014420 2.3e-15 88.2 266 28.2
C08p13470 Brassica napus HOM05D017215 ORTHO05D031730 4.0e-15 87.4 280 26.4
BcaB05g24989 Brassica carinata HOM05D008615 ORTHO05D096338 5.2e-15 87.0 54 70.4
BolC2t09389H Brassica oleracea HOM05D024680 ORTHO05D024444 1.2e-14 85.9 144 38.9
A03p58490 Brassica napus HOM05D008615 ORTHO05D021443 1.3e-13 82.4 176 30.1
vmacro11318 Vaccinium macrocarpon HOM05D000474 ORTHO05D006736 3.7e-13 80.9 203 30.5
AT3G44780 Arabidopsis thaliana HOM05D008615 ORTHO05D021391 6.4e-13 80.1 179 31.8
A02p02550 Brassica napus HOM05D013859 ORTHO05D018433 1.1e-12 79.3 216 24.5
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 1.1e-12 79.3 205 27.8
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 2.4e-12 78.2 211 27.5
CARHR170770 Cardamine hirsuta HOM05D013757 ORTHO05D018429 2.1e-11 75.1 271 24.4
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 2.7e-11 74.7 222 26.6
BcaC09g51771 Brassica carinata HOM05D016251 ORTHO05D017520 3.5e-11 74.3 210 27.6
BcaC09g52200 Brassica carinata HOM05D016251 ORTHO05D017520 1.0e-10 72.8 209 24.4
C01p09200 Brassica napus HOM05D016251 ORTHO05D017520 1.0e-10 72.8 209 24.4
Carub.0003s1933 Capsella rubella HOM05D003129 ORTHO05D014420 1.0e-10 72.8 292 21.6
C01p07570 Brassica napus HOM05D008615 ORTHO05D031979 2.3e-10 71.6 133 33.1
BolC1t00737H Brassica oleracea HOM05D008615 ORTHO05D031979 2.3e-10 71.6 133 33.1
BraA02t05224Z Brassica rapa HOM05D013859 ORTHO05D018433 3.0e-10 71.2 223 23.3
QL10p030265 Quercus lobata HOM05D000069 ORTHO05D011390 3.0e-10 71.2 210 25.7
CiPaw.09G138300 Carya illinoinensis HOM05D000069 ORTHO05D000060 5.1e-10 70.5 210 25.2
A01p08230 Brassica napus HOM05D016251 ORTHO05D017520 8.6e-10 69.7 169 26.0
BolC8t47890H Brassica oleracea HOM05D011295 ORTHO05D014420 8.6e-10 69.7 240 22.9
BraA01t00768Z Brassica rapa HOM05D016251 ORTHO05D017520 8.6e-10 69.7 169 26.0
QL04p051498 Quercus lobata HOM05D000069 ORTHO05D000060 8.6e-10 69.7 202 25.7
C02p33070 Brassica napus HOM05D024680 ORTHO05D024444 1.1e-09 69.3 63 55.6
QL04p051314 Quercus lobata HOM05D000069 ORTHO05D000060 1.9e-09 68.6 202 25.7
QL04p051395 Quercus lobata HOM05D000069 ORTHO05D000060 1.9e-09 68.6 202 25.7
AL3G48820 Arabidopsis lyrata HOM05D013757 ORTHO05D018429 7.3e-09 66.6 165 29.7
Lsat_1_v5_gn_4_78480 Lactuca sativa HOM05D000069 ORTHO05D000060 7.3e-09 66.6 219 25.6
BraA03t14910Z Brassica rapa HOM05D008615 ORTHO05D021443 1.2e-08 65.9 117 34.2
Rhsim08G0120700 Rhododendron simsii HOM05D030015 ORTHO05D000060 1.2e-08 65.9 212 25.9
BcaC07g38550 Brassica carinata HOM05D017215 ORTHO05D031730 1.6e-08 65.5 282 23.8
BolC5t34839H Brassica oleracea HOM05D017090 ORTHO05D018449 1.6e-08 65.5 225 26.2
QL04p049631 Quercus lobata HOM05D000069 ORTHO05D000060 1.6e-08 65.5 202 24.8
Potri.013G126100 Populus trichocarpa HOM05D000069 ORTHO05D000060 2.8e-08 64.7 203 24.1
Lsat_1_v5_gn_4_78460 Lactuca sativa HOM05D000069 ORTHO05D000060 3.6e-08 64.3 220 25.0
FAN04G2507 Fragaria x ananassa HOM05D000069 ORTHO05D000060 6.2e-08 63.5 204 27.5
C08p05210 Brassica napus HOM05D030632 ORTHO05D021391 8.1e-08 63.2 84 42.9
BraA08t35431Z Brassica rapa HOM05D011295 ORTHO05D014420 8.1e-08 63.2 184 26.6
Oeu008139.1 Olea europaea HOM05D000069 ORTHO05D000060 8.1e-08 63.2 200 25.5
Oeu008145.1 Olea europaea HOM05D000069 ORTHO05D000060 8.1e-08 63.2 200 25.5
RcHm_v2.0_Chr5g0010401 Rosa chinensis HOM05D000069 ORTHO05D000060 8.1e-08 63.2 203 26.6
Thhalv10010521m.g Eutrema salsugineum HOM05D000069 ORTHO05D000060 1.4e-07 62.4 228 25.0
FvH4_3g14380 Fragaria vesca HOM05D000069 ORTHO05D000060 1.4e-07 62.4 205 26.3
Cpa.g.sc33.75 Carica papaya HOM05D000069 ORTHO05D000060 1.8e-07 62.0 212 22.6
Duzib187G1413 Durio zibethinus HOM05D000069 ORTHO05D016924 1.8e-07 62.0 206 23.3
Ca_01719_v3 Cicer arietinum L. HOM05D000069 ORTHO05D000060 2.3e-07 61.6 201 24.4
FAN11G2436 Fragaria x ananassa HOM05D000069 ORTHO05D000060 2.3e-07 61.6 258 22.5
CARHR235030 Cardamine hirsuta HOM05D008615 ORTHO05D011779 3.1e-07 61.2 76 40.8
Migut.K01162 Erythranthe guttata HOM05D000069 ORTHO05D000060 3.1e-07 61.2 212 24.1
THA.LOC104798962 Tarenaya hassleriana HOM05D000069 ORTHO05D000060 3.1e-07 61.2 203 27.1
BcaC03g13485 Brassica carinata HOM05D013859 ORTHO05D018433 4.0e-07 60.8 208 23.1
FvH4_3g20730 Fragaria vesca HOM05D000069 ORTHO05D000060 4.0e-07 60.8 202 22.8
Actinidia10964 Actinidia chinensis HOM05D000069 ORTHO05D000060 5.2e-07 60.5 222 21.6
A08p04900 Brassica napus HOM05D030632 ORTHO05D021391 5.2e-07 60.5 127 34.6
BolC8t48977H Brassica oleracea HOM05D017215 ORTHO05D031730 5.2e-07 60.5 170 26.5
BraA08t32516Z Brassica rapa HOM05D030632 ORTHO05D021391 5.2e-07 60.5 127 34.6
CSS0009637 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 5.2e-07 60.5 203 24.1
Duzib213G0753 Durio zibethinus HOM05D000069 ORTHO05D000060 5.2e-07 60.5 203 27.6
FAN08G2770 Fragaria x ananassa HOM05D000069 ORTHO05D000060 5.2e-07 60.5 203 25.6
MSTRG.5417 Avicennia marina HOM05D000069 ORTHO05D001405 6.8e-07 60.1 231 28.1
MBI07_g21397_MAGBIO Magnolia biondii HOM05D000069 ORTHO05D000060 6.8e-07 60.1 200 23.5
Potri.013G118200 Populus trichocarpa HOM05D000069 ORTHO05D000060 6.8e-07 60.1 204 24.0
Rhsim13G0190400 Rhododendron simsii HOM05D000069 ORTHO05D000060 6.8e-07 60.1 203 27.1
Actinidia10965 Actinidia chinensis HOM05D000069 ORTHO05D000060 8.9e-07 59.7 222 21.2
Carub.0005s1573 Capsella rubella HOM05D000069 ORTHO05D000060 8.9e-07 59.7 229 26.6
Actinidia10963 Actinidia chinensis HOM05D000069 ORTHO05D000060 1.2e-06 59.3 222 21.6
COL.COLO4_23998 Corchorus olitorius HOM05D000069 ORTHO05D000060 1.2e-06 59.3 203 23.6
Thhalv10009660m.g Eutrema salsugineum HOM05D000069 ORTHO05D000060 1.2e-06 59.3 201 26.4
Prupe.3G125700 Prunus persica HOM05D000069 ORTHO05D000060 1.2e-06 59.3 308 24.7
BcaC07g39317 Brassica carinata HOM05D000069 ORTHO05D000060 1.5e-06 58.9 203 26.6
C08p23330 Brassica napus HOM05D000069 ORTHO05D000060 1.5e-06 58.9 203 26.6
BolC8t49963H Brassica oleracea HOM05D000069 ORTHO05D000060 1.5e-06 58.9 203 26.6
FAN16G1607 Fragaria x ananassa HOM05D000069 ORTHO05D000060 1.5e-06 58.9 204 24.5
Gohir.D05G158366 Gossypium hirsutum HOM05D000069 ORTHO05D000060 1.5e-06 58.9 203 24.1
Os02g0715000 Oryza sativa ssp. japonica HOM05D000069 ORTHO05D000060 1.5e-06 58.9 208 27.9
TWI59G1042 Tripterygium wilfordii HOM05D000069 ORTHO05D000060 1.5e-06 58.9 203 23.6
AT1G29080 Arabidopsis thaliana HOM05D000069 ORTHO05D000060 2.0e-06 58.5 222 25.7
EL10As2g23182 Beta vulgaris HOM05D000069 ORTHO05D000060 2.0e-06 58.5 205 25.4
BcaC08g44545 Brassica carinata HOM05D000331 ORTHO05D027779 2.0e-06 58.5 170 26.5
FAN16G1643 Fragaria x ananassa HOM05D000069 ORTHO05D000060 2.0e-06 58.5 204 24.5
FAN21G0220 Fragaria x ananassa HOM05D000069 ORTHO05D000060 2.0e-06 58.5 202 22.3
Gorai.009G163300 Gossypium raimondii HOM05D000069 ORTHO05D000060 2.0e-06 58.5 203 24.1
VMungo1127G1715 Vigna mungo HOM05D000069 ORTHO05D000060 2.0e-06 58.5 203 24.1
arahy.Tifrunner.gnm1.ann1.6D8LM1 Arachis hypogaea HOM05D000069 ORTHO05D000060 2.6e-06 58.2 214 25.2
BcaC07g38457 Brassica carinata HOM05D011295 ORTHO05D032157 2.6e-06 58.2 153 26.1
Gohir.A05G155600 Gossypium hirsutum HOM05D000069 ORTHO05D000060 2.6e-06 58.2 202 23.3
Actinidia10960 Actinidia chinensis HOM05D000069 ORTHO05D000060 3.4e-06 57.8 202 21.3
AT1G23935 Arabidopsis thaliana HOM05D000929 ORTHO05D038725 3.4e-06 57.8 268 23.1
AT3G49340 Arabidopsis thaliana HOM05D000069 ORTHO05D000060 3.4e-06 57.8 248 22.2
Rhsim13G0190800 Rhododendron simsii HOM05D000069 ORTHO05D000060 3.4e-06 57.8 204 24.5
Actinidia11140 Actinidia chinensis HOM05D000069 ORTHO05D000060 4.4e-06 57.4 203 21.7
BcaC06g35398 Brassica carinata HOM05D000069 ORTHO05D000060 4.4e-06 57.4 204 24.0
A05p11570 Brassica napus HOM05D000069 ORTHO05D000060 4.4e-06 57.4 218 23.9
Carub.0005s1574 Capsella rubella HOM05D000069 ORTHO05D000060 4.4e-06 57.4 236 24.6
Gorai.010G158800 Gossypium raimondii HOM05D000069 ORTHO05D000060 4.4e-06 57.4 202 26.2
HanXRQChr09g0272501 Helianthus annuus HOM05D000069 ORTHO05D000060 4.4e-06 57.4 213 24.9
Hma1.2p1_0178F.1_g078170 Hydrangea macrophylla HOM05D000069 ORTHO05D000060 4.4e-06 57.4 204 23.5
Rhsim13G0190700 Rhododendron simsii HOM05D000069 ORTHO05D000060 4.4e-06 57.4 204 25.0
unitig_578.g16411 Utricularia gibba HOM05D000069 ORTHO05D000060 4.4e-06 57.4 212 23.6
AT1G29090 Arabidopsis thaliana HOM05D000069 ORTHO05D000060 5.8e-06 57.0 201 24.9
MSTRG.16833 Avicennia marina HOM05D000069 ORTHO05D001405 5.8e-06 57.0 215 28.4
BcaC09g49936 Brassica carinata HOM05D000069 ORTHO05D000060 5.8e-06 57.0 200 24.5
C01p31010 Brassica napus HOM05D000069 ORTHO05D000060 5.8e-06 57.0 200 24.5
SGA_v2.0_scaffold90G27794 Striga asiatica HOM05D000069 ORTHO05D000060 5.8e-06 57.0 200 25.0
Thecc.06G172500 Theobroma cacao HOM05D000069 ORTHO05D000060 5.8e-06 57.0 202 23.3
Aa31LG9G13890 Aethionema arabicum HOM05D000069 ORTHO05D000060 7.6e-06 56.6 266 24.1
arahy.Tifrunner.gnm1.ann1.W9N7XY Arachis hypogaea HOM05D000069 ORTHO05D000060 7.6e-06 56.6 204 24.0
CSS0046592 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 7.6e-06 56.6 202 22.3
ECA240G0283 Erigeron canadensis HOM05D000069 ORTHO05D000060 7.6e-06 56.6 206 26.2
Nn4g22521 Nelumbo nucifera HOM05D000069 ORTHO05D000060 7.6e-06 56.6 220 24.5
RcHm_v2.0_Chr5g0067391 Rosa chinensis HOM05D000069 ORTHO05D000060 7.6e-06 56.6 202 23.3
Solyc05g013920.4 Solanum lycopersicum HOM05D000069 ORTHO05D000060 7.6e-06 56.6 220 24.5
Sopen05g008850 Solanum pennellii HOM05D000069 ORTHO05D000060 7.6e-06 56.6 220 24.5
TPR.G30404 Trifolium pratense HOM05D000069 ORTHO05D022929 7.6e-06 56.6 202 25.7
arahy.Tifrunner.gnm1.ann1.G1K9TP Arachis hypogaea HOM05D000069 ORTHO05D000060 9.9e-06 56.2 204 24.0
BcaB05g23108 Brassica carinata HOM05D000069 ORTHO05D000060 9.9e-06 56.2 227 23.8
BcaC05g26928 Brassica carinata HOM05D000069 ORTHO05D000060 9.9e-06 56.2 201 25.9
BcaC07g39574 Brassica carinata HOM05D000069 ORTHO05D000060 9.9e-06 56.2 235 26.8
A07p10960 Brassica napus HOM05D000069 ORTHO05D000060 9.9e-06 56.2 198 24.7
C05p27820 Brassica napus HOM05D000069 ORTHO05D000060 9.9e-06 56.2 201 25.9
BraA07t28885Z Brassica rapa HOM05D000069 ORTHO05D000060 9.9e-06 56.2 194 23.7
HanXRQChr02g0035341 Helianthus annuus HOM05D000069 ORTHO05D000060 9.9e-06 56.2 219 24.7
Lj8A102T65 Lonicera japonica HOM05D000069 ORTHO05D000060 9.9e-06 56.2 233 21.5
Potri.013G118400 Populus trichocarpa HOM05D000069 ORTHO05D000060 9.9e-06 56.2 202 23.3
Thecc.06G171700 Theobroma cacao HOM05D000069 ORTHO05D000060 9.9e-06 56.2 201 21.4


User provided reference genes

Program Settings