Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 6.1e-125 451.1 264 100.0
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 6.7e-124 447.6 264 99.2
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 1.9e-123 446.0 264 99.2
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 4.2e-118 428.3 264 96.6
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 4.3e-115 418.3 264 90.5
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 2.1e-85 319.7 272 73.9
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 8.8e-84 314.3 271 75.6
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 1.2e-83 313.9 272 72.4
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 1.5e-83 313.5 281 70.8
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 4.4e-83 312.0 276 68.8
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 1.3e-82 310.5 272 74.6
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 1.3e-82 310.5 277 70.8
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 8.3e-82 307.8 280 71.4
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 3.5e-80 302.4 274 69.0
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 3.6e-77 292.4 268 76.1
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 3.6e-77 292.4 277 64.3
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 2.3e-63 246.5 272 64.0
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 8.6e-63 244.6 204 72.1
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 2.1e-61 240.0 289 60.6
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 4.4e-43 179.1 255 48.2
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 1.9e-41 173.7 271 42.4
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 2.4e-41 173.3 263 44.5
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 1.6e-40 170.6 259 46.7
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.3e-39 167.5 268 45.9
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 1.7e-39 167.2 258 46.9
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 1.7e-39 167.2 258 46.9
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 2.3e-39 166.8 266 43.2
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 5.1e-39 165.6 259 46.3
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 5.1e-39 165.6 259 46.3
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 5.1e-39 165.6 261 45.2
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 5.1e-39 165.6 256 44.9
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 1.1e-38 164.5 261 44.4
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 1.1e-38 164.5 261 44.4
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 1.5e-38 164.1 262 43.9
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 4.3e-38 162.5 262 43.5
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 2.8e-37 159.8 254 44.9
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 6.9e-36 155.2 238 46.6
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 2.2e-34 150.2 258 44.6
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 1.1e-30 137.9 260 40.4
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 3.6e-29 132.9 267 39.7
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 1.8e-28 130.6 133 64.7
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 1.5e-27 127.5 264 36.7
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 3.4e-27 126.3 265 38.1
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 3.4e-27 126.3 262 37.8
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 7.6e-27 125.2 267 37.5
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 2.2e-26 123.6 262 35.9
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 4.9e-26 122.5 192 45.3
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 4.2e-25 119.4 263 37.6
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 5.5e-25 119.0 254 33.1
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 1.2e-24 117.9 257 35.0
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 1.6e-24 117.5 263 36.9
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.1e-24 117.1 262 43.9
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 2.1e-24 117.1 262 37.0
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 4.6e-24 115.9 264 35.6
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 1.3e-23 114.4 260 33.8
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 2.3e-23 113.6 264 38.3
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 3.0e-23 113.2 264 36.7
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 3.0e-23 113.2 292 32.9
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 3.0e-23 113.2 257 42.8
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 3.9e-23 112.8 292 32.5
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 3.9e-23 112.8 265 33.2
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 3.9e-23 112.8 277 32.9
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 6.7e-23 112.1 275 35.3
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.1e-22 111.3 263 32.7
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 2.5e-22 110.2 258 33.3
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 9.6e-22 108.2 265 33.2
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 9.6e-22 108.2 256 34.4
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 9.6e-22 108.2 262 32.1
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.3e-21 107.8 261 35.6
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 1.3e-21 107.8 293 30.7
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 1.3e-21 107.8 257 35.4
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 1.3e-21 107.8 290 34.8
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 1.3e-21 107.8 273 32.6
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 1.6e-21 107.5 267 31.8
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 2.1e-21 107.1 274 40.9
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 2.1e-21 107.1 264 36.4
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 3.7e-21 106.3 269 36.4
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 3.7e-21 106.3 261 36.4
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 4.8e-21 105.9 267 33.0
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 6.2e-21 105.5 256 36.3
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 8.1e-21 105.1 256 32.4
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 8.1e-21 105.1 259 31.7
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 8.1e-21 105.1 259 32.0
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 1.1e-20 104.8 273 32.2
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 1.4e-20 104.4 255 38.4
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 1.8e-20 104.0 269 36.8
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 3.1e-20 103.2 274 32.1
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.1e-20 103.2 259 31.3
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 3.1e-20 103.2 260 31.5
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 5.3e-20 102.4 296 36.5
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 9.0e-20 101.7 293 38.2
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.5e-19 100.9 260 37.3
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 2.0e-19 100.5 271 31.7
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 2.0e-19 100.5 254 34.3
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 3.4e-19 99.8 259 34.0
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 4.5e-19 99.4 271 40.2
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 4.5e-19 99.4 263 31.9
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 5.8e-19 99.0 276 34.8
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 7.6e-19 98.6 279 30.5
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 1.7e-18 97.4 251 33.9
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.7e-18 97.4 269 37.2
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 1.7e-18 97.4 282 31.2
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 2.9e-18 96.7 298 30.9
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 2.9e-18 96.7 261 34.5
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 2.9e-18 96.7 261 34.9
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 4.9e-18 95.9 256 31.6
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 6.5e-18 95.5 257 31.1
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 1.4e-17 94.4 257 34.2
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 1.9e-17 94.0 259 30.1
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 3.2e-17 93.2 266 31.2
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 5.5e-17 92.4 265 32.1
BcaC08g47296 Brassica carinata HOM05D003173 ORTHO05D003546 4.6e-16 89.4 68 70.6
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 4.6e-16 89.4 279 31.5
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 4.6e-16 89.4 180 40.6
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 3.9e-15 86.3 258 32.6
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 3.9e-15 86.3 256 30.9
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 8.7e-15 85.1 285 30.5
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 8.7e-15 85.1 207 30.9
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 1.1e-14 84.7 257 30.7
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 1.1e-14 84.7 303 28.4
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 1.1e-14 84.7 270 32.2
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.5e-14 84.3 261 31.0
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.5e-14 84.3 252 29.0
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 1.5e-14 84.3 267 36.7
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 3.3e-14 83.2 260 33.5
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 3.3e-14 83.2 274 32.1
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 4.3e-14 82.8 260 33.5
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 4.3e-14 82.8 275 36.0
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 5.7e-14 82.4 258 31.4
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 7.4e-14 82.0 274 31.0
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 7.4e-14 82.0 262 34.4
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 9.6e-14 81.6 253 30.4
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 9.6e-14 81.6 274 31.8
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 9.6e-14 81.6 262 32.1
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 2.1e-13 80.5 261 30.7
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 2.8e-13 80.1 257 31.1
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 2.8e-13 80.1 264 29.9
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 3.7e-13 79.7 274 30.7
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 4.8e-13 79.3 253 28.5
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 8.2e-13 78.6 263 31.6
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 1.1e-12 78.2 264 29.2
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 1.4e-12 77.8 271 28.8
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 1.4e-12 77.8 270 31.1
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 1.8e-12 77.4 266 28.9
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 1.8e-12 77.4 252 29.0
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 5.3e-12 75.9 289 29.1
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 6.9e-12 75.5 261 33.7
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 9.0e-12 75.1 273 27.5
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 9.0e-12 75.1 254 31.9
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 9.0e-12 75.1 267 26.6
Lalb_Chr01g0008491 Lupinus albus HOM05D003173 ORTHO05D003546 9.0e-12 75.1 209 34.0
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 3.4e-11 73.2 182 34.1
BcaB01g00240 Brassica carinata HOM05D003173 ORTHO05D003546 4.5e-11 72.8 152 40.8
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 5.9e-11 72.4 258 29.8
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 1.3e-10 71.2 178 34.3
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 5.0e-10 69.3 273 34.1
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 8.5e-10 68.6 263 29.3
unitig_748.g7605 Utricularia gibba HOM05D003173 ORTHO05D003546 1.9e-09 67.4 226 29.2
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 2.5e-09 67.0 235 28.1
CDE05G2702 Ceratophyllum demersum HOM05D003173 ORTHO05D003546 3.2e-09 66.6 244 31.6
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 4.2e-09 66.2 213 30.0
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 9.3e-09 65.1 235 28.1
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.2e-08 64.7 253 27.7
SHI13075 Sapria himalayana HOM05D003173 ORTHO05D003546 3.6e-08 63.2 235 27.7
Hma1.2p1_1598F.1_g292960 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 6.1e-08 62.4 195 30.8
Thecc.01G011100 Theobroma cacao HOM05D003173 ORTHO05D003546 6.1e-08 62.4 173 35.8
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 7.9e-08 62.0 210 30.0
Zm00001eb331720 Zea mays HOM05D003173 ORTHO05D003546 7.9e-08 62.0 158 38.6
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 1.0e-07 61.6 275 28.0
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 1.0e-07 61.6 178 35.4
Lj4g0000766 Lotus japonicus HOM05D003173 ORTHO05D003546 2.3e-07 60.5 172 32.6
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 2.3e-07 60.5 271 26.9
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 3.9e-07 59.7 264 26.9
GSVIVG01008738001 Vitis vinifera HOM05D003173 ORTHO05D003546 5.1e-07 59.3 180 32.8
Ca_15466_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 6.7e-07 58.9 102 44.1
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 1.1e-06 58.2 271 27.3
Ah.00g000650 Amaranthus hybridus HOM05D003173 ORTHO05D003546 1.5e-06 57.8 106 50.9
Gohir.A12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.5e-06 57.8 177 30.5
Gohir.D12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.5e-06 57.8 177 31.6
TPR.G32014 Trifolium pratense HOM05D003173 ORTHO05D003546 1.5e-06 57.8 173 32.4
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 1.9e-06 57.4 245 29.0
COL.COLO4_22498 Corchorus olitorius HOM05D003173 ORTHO05D003546 3.3e-06 56.6 177 33.9
Gorai.008G061700 Gossypium raimondii HOM05D003173 ORTHO05D003546 5.7e-06 55.8 178 32.6
CiPaw.07G063500 Carya illinoinensis HOM05D003173 ORTHO05D003546 7.4e-06 55.5 191 30.4
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 7.4e-06 55.5 249 26.1


User provided reference genes

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