Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 2.1e-129 465.7 228 100.0
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 4.4e-124 448.0 221 98.2
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 4.9e-123 444.5 221 97.7
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 3.4e-116 421.8 216 94.4
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 9.2e-114 413.7 222 91.0
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.5e-111 406.4 228 86.0
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 4.9e-107 391.3 223 84.8
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 3.8e-99 365.2 219 80.4
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 4.9e-99 364.8 228 77.6
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 8.4e-99 364.0 219 79.5
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 1.9e-98 362.8 219 79.0
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 2.7e-97 359.0 221 79.2
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 6.0e-97 357.8 219 78.1
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 6.0e-97 357.8 219 78.1
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 2.1e-94 349.4 237 72.6
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 4.0e-93 345.1 219 75.8
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.7e-91 339.7 214 77.1
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 2.2e-91 339.3 238 70.6
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 4.9e-91 338.2 249 69.5
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 6.4e-91 337.8 226 71.2
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.1e-90 337.0 226 70.8
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 7.1e-90 334.3 226 68.6
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 9.3e-90 334.0 226 70.4
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.6e-89 333.2 226 69.5
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 2.1e-89 332.8 218 71.1
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 4.6e-89 331.6 226 69.9
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-88 330.1 226 68.6
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 3.9e-88 328.6 227 69.2
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 8.7e-88 327.4 226 68.1
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 7.4e-87 324.3 230 72.2
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-86 323.6 223 69.1
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.5e-84 316.6 235 66.4
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 4.2e-74 282.0 211 63.5
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 7.2e-74 281.2 210 63.8
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 9.4e-74 280.8 210 63.8
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.2e-73 280.4 216 65.3
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 1.6e-73 280.0 228 61.4
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 2.1e-73 279.6 232 61.2
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 4.6e-73 278.5 224 58.9
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 6.1e-73 278.1 218 62.4
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 7.9e-73 277.7 212 62.3
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 7.9e-73 277.7 206 66.0
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.0e-72 277.3 196 66.8
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.4e-72 276.9 233 60.1
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 5.1e-72 275.0 228 61.8
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 1.1e-71 273.9 228 61.0
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 2.0e-71 273.1 225 59.6
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 2.5e-71 272.7 228 60.1
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 3.3e-71 272.3 219 59.8
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 9.7e-71 270.8 226 59.3
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 9.7e-71 270.8 221 60.2
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 2.2e-70 269.6 226 58.8
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 2.8e-70 269.2 216 59.7
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 3.7e-70 268.9 196 63.8
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 6.3e-70 268.1 228 59.6
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.4e-69 266.9 227 56.8
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 2.4e-69 266.2 207 60.9
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 2.4e-69 266.2 230 56.5
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 3.1e-69 265.8 217 57.6
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 6.9e-69 264.6 227 57.7
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 6.9e-69 264.6 220 55.9
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.9e-69 264.6 218 57.8
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.9e-69 264.6 218 57.8
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.5e-68 263.5 208 60.1
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.4e-68 262.3 219 58.0
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.9e-68 261.5 208 62.0
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.9e-68 261.5 227 56.4
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 1.0e-67 260.8 203 62.6
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 1.3e-67 260.4 211 59.7
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 1.7e-67 260.0 211 59.2
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 2.9e-67 259.2 172 72.7
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.9e-67 259.2 211 60.2
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 3.8e-67 258.8 216 58.3
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.8e-67 258.8 220 57.7
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.8e-67 258.8 220 57.7
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 1.4e-66 256.9 223 57.4
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 3.2e-66 255.8 206 58.7
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 5.5e-66 255.0 220 56.8
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 9.4e-66 254.2 194 62.9
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 9.4e-66 254.2 219 58.4
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 1.2e-65 253.8 214 58.9
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.6e-65 253.4 213 59.2
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 2.7e-65 252.7 213 58.7
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 3.6e-65 252.3 200 57.5
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.0e-64 250.8 219 55.7
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.0e-64 250.8 211 58.3
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.0e-64 250.8 211 58.3
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 1.0e-64 250.8 227 54.6
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.4e-64 250.4 207 58.5
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 8.8e-64 247.7 200 59.5
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 1.1e-63 247.3 228 55.3
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 2.0e-63 246.5 212 58.0
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.6e-63 246.1 214 55.1
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.3e-62 243.8 214 57.5
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 1.3e-62 243.8 180 62.8
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.3e-62 243.8 203 57.1
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 2.2e-62 243.0 222 52.7
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.8e-62 242.7 214 55.1
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 2.8e-62 242.7 216 54.6
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 2.8e-62 242.7 194 57.2
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 6.3e-62 241.5 196 59.7
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 8.2e-62 241.1 211 56.4
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.4e-61 240.4 196 57.7
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 1.4e-61 240.4 207 56.0
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 1.4e-61 240.4 213 55.4
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.8e-61 240.0 218 54.6
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 9.1e-61 237.7 207 56.0
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 1.2e-60 237.3 206 54.9
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.2e-60 237.3 216 54.6
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.5e-60 236.9 232 51.3
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 1.5e-60 236.9 208 55.8
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 2.0e-60 236.5 224 52.2
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 3.5e-60 235.7 188 59.0
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 4.5e-60 235.3 205 55.6
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.2e-59 233.0 209 56.5
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 2.9e-59 232.6 115 97.4
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 3.8e-59 232.3 197 57.4
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 8.5e-59 231.1 224 51.3
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 2.5e-58 229.6 206 54.9
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 1.2e-57 227.3 206 53.9
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 2.1e-57 226.5 210 52.4
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 4.7e-57 225.3 206 53.4
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 6.1e-57 224.9 215 50.2
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 8.0e-57 224.6 189 57.1
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 2.6e-55 219.5 189 56.1
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 3.3e-55 219.2 216 50.9
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 7.4e-55 218.0 227 47.6
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.4e-53 213.8 207 50.7
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 7.7e-52 208.0 214 48.6
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 6.5e-51 204.9 194 52.1
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.5e-50 203.8 172 61.0
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.9e-50 203.4 218 47.2
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 7.2e-50 201.4 208 48.6
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.6e-49 199.1 194 50.5
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 8.0e-49 198.0 112 83.0
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 1.4e-48 197.2 197 49.2
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 5.2e-48 195.3 200 47.5
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.5e-47 193.7 194 47.4
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 4.4e-47 192.2 213 47.4
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 7.5e-47 191.4 212 48.1
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 9.8e-47 191.0 180 56.1
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 2.2e-46 189.9 91 97.8
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 2.7e-44 183.0 171 52.6
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 1.2e-41 174.1 138 63.0
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 8.0e-41 171.4 203 45.8
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 6.8e-40 168.3 215 46.0
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 6.8e-40 168.3 193 43.0
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 5.7e-39 165.2 139 56.8
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.3e-38 164.1 224 42.4
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 8.3e-38 161.4 127 59.8
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.0e-35 154.5 110 68.2
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 1.7e-35 153.7 110 68.2
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.9e-35 152.9 144 52.1
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 4.2e-34 149.1 199 38.2
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 7.2e-34 148.3 102 69.6
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.2e-33 147.5 172 49.4
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.4e-32 144.1 114 61.4
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 1.8e-32 143.7 216 37.5
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 2.0e-31 140.2 101 67.3
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 3.4e-31 139.4 151 49.0
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.2e-28 131.0 129 48.8
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-28 130.6 64 96.9
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.6e-28 130.6 99 63.6
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.0e-27 127.9 111 54.1
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 1.3e-27 127.5 111 56.8
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.9e-27 126.3 149 47.0
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 2.5e-26 123.2 92 63.0
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 9.5e-26 121.3 87 67.8
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 5.4e-21 105.5 192 34.4
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 7.0e-21 105.1 77 66.2
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 9.2e-21 104.8 165 35.8
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 9.2e-21 104.8 107 49.5
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 6.6e-19 98.6 87 56.3
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.5e-18 97.4 84 50.0
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 4.3e-18 95.9 113 50.4
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.3e-16 90.1 84 54.8
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 3.0e-11 73.2 64 57.8
C03p90670 Brassica napus HOM05D000138 ORTHO05D032089 2.5e-10 70.1 67 58.2
BolC3t21388H Brassica oleracea HOM05D000901 ORTHO05D032089 3.1e-08 63.2 46 69.6
BcaC07g42528 Brassica carinata HOM05D037012 ORTHO05D039422 8.4e-06 55.1 46 65.2


User provided reference genes

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