Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15617 Brassica carinata HOM05D002661 ORTHO05D002786 9.0e-83 310.5 186 100.0
A02p20180 Brassica napus HOM05D002661 ORTHO05D002786 2.4e-67 259.2 217 69.6
BolC2t09330H Brassica oleracea HOM05D002661 ORTHO05D002786 4.1e-67 258.5 186 88.2
C02p33750 Brassica napus HOM05D002661 ORTHO05D002786 1.0e-65 253.8 190 80.5
BraA02t07053Z Brassica rapa HOM05D002661 ORTHO05D002786 2.2e-60 236.1 189 70.4
Thhalv10019714m.g Eutrema salsugineum HOM05D002661 ORTHO05D002786 3.7e-52 208.8 200 70.5
Sp5g30840 Schrenkiella parvula HOM05D002661 ORTHO05D002786 2.6e-50 202.6 199 67.8
BcaB05g24936 Brassica carinata HOM05D002661 ORTHO05D002786 2.2e-49 199.5 182 64.8
BolC6t40006H Brassica oleracea HOM05D002661 ORTHO05D002786 2.1e-47 193.0 200 65.0
BcaC08g47048 Brassica carinata HOM05D002661 ORTHO05D002786 2.7e-47 192.6 198 67.2
C06p49670 Brassica napus HOM05D002661 ORTHO05D002786 1.5e-45 186.8 222 60.4
A07p41250 Brassica napus HOM05D002661 ORTHO05D002786 2.6e-45 186.0 222 61.7
BraA07t31660Z Brassica rapa HOM05D002661 ORTHO05D002786 2.6e-45 186.0 222 61.7
AL2G35710 Arabidopsis lyrata HOM05D002661 ORTHO05D002786 7.4e-45 184.5 198 61.1
AT1G75720 Arabidopsis thaliana HOM05D002661 ORTHO05D002786 1.4e-43 180.3 197 57.9
Carub.0002s2257 Capsella rubella HOM05D002661 ORTHO05D002786 4.5e-42 175.3 198 66.7
CARHR069130 Cardamine hirsuta HOM05D002661 ORTHO05D002786 4.8e-36 155.2 193 65.8
Aa31LG4G5950 Aethionema arabicum HOM05D002661 ORTHO05D002786 1.3e-20 104.0 202 51.5
THA.LOC104811385 Tarenaya hassleriana HOM05D002661 ORTHO05D002786 1.1e-19 100.9 200 43.0
MBI05_g15357_MAGBIO Magnolia biondii HOM05D002661 ORTHO05D002786 2.3e-14 83.2 210 36.7
Duzib041G0251 Durio zibethinus HOM05D002661 ORTHO05D002786 6.8e-14 81.6 202 36.6
Lsat_1_v5_gn_2_10300 Lactuca sativa HOM05D002661 ORTHO05D002786 1.5e-13 80.5 202 38.6
Phvul.009G016600 Phaseolus vulgaris HOM05D002661 ORTHO05D002786 1.5e-13 80.5 212 36.3
QL02p011493 Quercus lobata HOM05D002661 ORTHO05D002786 3.4e-13 79.3 204 37.3
Nn5g30157 Nelumbo nucifera HOM05D002661 ORTHO05D002786 9.8e-13 77.8 203 36.0
Thecc.08G043600 Theobroma cacao HOM05D002661 ORTHO05D002786 9.8e-13 77.8 202 41.1
Gohir.D06G000400 Gossypium hirsutum HOM05D002661 ORTHO05D002786 1.7e-12 77.0 202 44.1
Gorai.010G004800 Gossypium raimondii HOM05D002661 ORTHO05D002786 1.7e-12 77.0 202 43.1
TAR381G1099 Trochodendron aralioides HOM05D002661 ORTHO05D002786 1.7e-12 77.0 208 35.1
MD08G1013500 Malus domestica HOM05D002661 ORTHO05D002786 2.2e-12 76.6 212 34.9
AUR62035749 Chenopodium quinoa HOM05D002661 ORTHO05D002786 2.9e-12 76.3 205 41.0
VMungo1309G1856 Vigna mungo HOM05D002661 ORTHO05D002786 3.7e-12 75.9 210 42.4
Aqoxy4G02812 Aquilegia oxysepala HOM05D002661 ORTHO05D002786 6.4e-12 75.1 201 35.8
CiPaw.07G150800 Carya illinoinensis HOM05D002661 ORTHO05D002786 6.4e-12 75.1 203 38.9
Duzib093G0349 Durio zibethinus HOM05D002661 ORTHO05D002786 6.4e-12 75.1 205 37.6
Manes.05G148000 Manihot esculenta HOM05D002661 ORTHO05D002786 6.4e-12 75.1 193 39.4
vmacro04348 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 6.4e-12 75.1 202 35.6
Haze_22627 Corylus avellana HOM05D002661 ORTHO05D002786 1.4e-11 73.9 199 36.7
CSS0015710 Camellia sinensis var. sinensis HOM05D002661 ORTHO05D002786 1.9e-11 73.6 202 38.6
Gohir.A06G004600 Gossypium hirsutum HOM05D002661 ORTHO05D002786 1.9e-11 73.6 202 41.6
AUR62033833 Chenopodium quinoa HOM05D002661 ORTHO05D002786 2.4e-11 73.2 206 38.3
Ciclev10002504m.g Citrus clementina HOM05D002661 ORTHO05D002786 2.4e-11 73.2 203 36.5
COL.COLO4_26155 Corchorus olitorius HOM05D002661 ORTHO05D002786 3.2e-11 72.8 207 36.7
Lj4A25T51 Lonicera japonica HOM05D002661 ORTHO05D002786 3.2e-11 72.8 200 37.5
Actinidia28594 Actinidia chinensis HOM05D002661 ORTHO05D002786 5.4e-11 72.0 192 34.9
Dinv39512 Davidia involucrata HOM05D002661 ORTHO05D002786 5.4e-11 72.0 190 34.7
Gorai.009G270100 Gossypium raimondii HOM05D002661 ORTHO05D002786 5.4e-11 72.0 205 33.7
Gohir.A05G257100 Gossypium hirsutum HOM05D002661 ORTHO05D002786 7.0e-11 71.6 205 33.7
Psat5g013240 Pisum sativum HOM05D002661 ORTHO05D002786 7.0e-11 71.6 214 33.6
Rhsim07G0246900 Rhododendron simsii HOM05D002661 ORTHO05D002786 7.0e-11 71.6 206 33.5
Sabra05G0184300 Salix brachista HOM05D002661 ORTHO05D002786 7.0e-11 71.6 207 32.9
Medtr3g113810 Medicago truncatula HOM05D002661 ORTHO05D002786 1.2e-10 70.9 210 35.2
Glyma.04G024600 Glycine max HOM05D002661 ORTHO05D002786 2.0e-10 70.1 208 41.8
Lalb_Chr11g0061941 Lupinus albus HOM05D002661 ORTHO05D002786 2.7e-10 69.7 202 38.1
Cfa013943 Carpinus fangiana HOM05D002661 ORTHO05D002786 4.6e-10 68.9 204 35.3
Actinidia37931 Actinidia chinensis HOM05D002661 ORTHO05D002786 6.0e-10 68.6 191 36.6
EL10Ac1g02294 Beta vulgaris HOM05D002661 ORTHO05D002786 6.0e-10 68.6 217 34.6
Potri.002G023000 Populus trichocarpa HOM05D002661 ORTHO05D002786 6.0e-10 68.6 207 33.3
CiPaw.08G066000 Carya illinoinensis HOM05D002661 ORTHO05D002786 1.0e-09 67.8 208 39.9
Actinidia15417 Actinidia chinensis HOM05D002661 ORTHO05D002786 1.3e-09 67.4 195 36.9
Glyma.06G024700 Glycine max HOM05D002661 ORTHO05D002786 1.3e-09 67.4 209 38.3
PSO541G3760 Papaver somniferum HOM05D002661 ORTHO05D002786 1.3e-09 67.4 215 37.7
Sc15g0005030 Simmondsia chinensis HOM05D002661 ORTHO05D002786 1.3e-09 67.4 198 38.4
Gohir.D05G258600 Gossypium hirsutum HOM05D002661 ORTHO05D002786 1.7e-09 67.0 216 31.9
Peaxi162Scf00438g00717 Petunia axillaris HOM05D002661 ORTHO05D002786 1.7e-09 67.0 200 31.5
Ca_15484_v3 Cicer arietinum L. HOM05D002661 ORTHO05D002786 2.3e-09 66.6 220 31.8
CANSAT25G0605 Cannabis sativa HOM05D002661 ORTHO05D002786 3.0e-09 66.2 231 35.5
DCAR_013866 Daucus carota HOM05D002661 ORTHO05D002786 3.9e-09 65.9 202 33.2
Dinv31838 Davidia involucrata HOM05D002661 ORTHO05D002786 3.9e-09 65.9 202 32.2
Lalb_Chr14g0369851 Lupinus albus HOM05D002661 ORTHO05D002786 3.9e-09 65.9 207 33.3
Solyc04g081390.4 Solanum lycopersicum HOM05D002661 ORTHO05D002786 5.0e-09 65.5 197 28.9
TWI36G0177 Tripterygium wilfordii HOM05D002661 ORTHO05D002786 5.0e-09 65.5 177 42.9
HanXRQChr14g0430361 Helianthus annuus HOM05D002661 ORTHO05D002786 8.6e-09 64.7 187 32.1
Nitab4.5_0010507g0010 Nicotiana tabacum HOM05D002661 ORTHO05D002786 1.1e-08 64.3 185 33.5
CDE05G2590 Ceratophyllum demersum HOM05D002661 ORTHO05D002786 1.5e-08 63.9 158 34.2
Nitab4.5_0000337g0140 Nicotiana tabacum HOM05D002661 ORTHO05D002786 1.5e-08 63.9 201 33.8
PGSC0003DMG400009934 Solanum tuberosum HOM05D002661 ORTHO05D002786 1.5e-08 63.9 192 29.7
MD15G1013000 Malus domestica HOM05D002661 ORTHO05D002786 1.9e-08 63.5 206 35.0
TPR.G34544 Trifolium pratense HOM05D002661 ORTHO05D002786 1.9e-08 63.5 212 35.4
arahy.Tifrunner.gnm1.ann1.T25A5J Arachis hypogaea HOM05D002661 ORTHO05D002786 3.3e-08 62.8 217 31.8
Sabra02G0018800 Salix brachista HOM05D002661 ORTHO05D002786 3.3e-08 62.8 202 36.6
arahy.Tifrunner.gnm1.ann1.TT5BBF Arachis hypogaea HOM05D002661 ORTHO05D002786 7.3e-08 61.6 218 30.7
FAN20G0494 Fragaria x ananassa HOM05D002661 ORTHO05D002786 7.3e-08 61.6 216 31.5
Oeu054697.1 Olea europaea HOM05D002661 ORTHO05D002786 7.3e-08 61.6 188 39.4
Peaxi162Scf00400g00048 Petunia axillaris HOM05D002661 ORTHO05D002786 7.3e-08 61.6 203 34.0
Prupe.1G366100 Prunus persica HOM05D002661 ORTHO05D002786 9.5e-08 61.2 215 32.1
CSS0007330 Camellia sinensis var. sinensis HOM05D002661 ORTHO05D002786 1.6e-07 60.5 198 37.4
SGA_v2.0_scaffold11G05914 Striga asiatica HOM05D002661 ORTHO05D002786 1.6e-07 60.5 208 39.9
SGA_v2.0_scaffold12G05967 Striga asiatica HOM05D002661 ORTHO05D002786 1.6e-07 60.5 210 29.5
Cc10_g01730 Coffea canephora HOM05D002661 ORTHO05D002786 2.1e-07 60.1 203 32.5
vmacro21919 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 2.1e-07 60.1 203 30.0
Lj1g0023294 Lotus japonicus HOM05D002661 ORTHO05D002786 4.7e-07 58.9 208 36.1
MELO3C003756.2 Cucumis melo HOM05D002661 ORTHO05D002786 6.2e-07 58.5 204 30.4
FAN15G3636 Fragaria x ananassa HOM05D002661 ORTHO05D002786 6.2e-07 58.5 214 36.0
FAN27G2774 Fragaria x ananassa HOM05D002661 ORTHO05D002786 6.2e-07 58.5 214 36.0
ATR0481G008 Amborella trichopoda HOM05D002661 ORTHO05D002786 8.0e-07 58.2 232 28.9
FvH4_2g38540 Fragaria vesca HOM05D002661 ORTHO05D002786 8.0e-07 58.2 212 35.8
Cpa.g.sc26.35 Carica papaya HOM05D002661 ORTHO05D002786 1.1e-06 57.8 198 40.4
TWI56G0437 Tripterygium wilfordii HOM05D002661 ORTHO05D002786 1.1e-06 57.8 205 41.0
CDE05G2569 Ceratophyllum demersum HOM05D002661 ORTHO05D002786 1.8e-06 57.0 158 32.3
COL.COLO4_21913 Corchorus olitorius HOM05D002661 ORTHO05D002786 1.8e-06 57.0 208 29.3
Oeu046268.1 Olea europaea HOM05D000745 ORTHO05D000641 1.8e-06 57.0 201 35.3
Potri.005G238500 Populus trichocarpa HOM05D002661 ORTHO05D002786 1.8e-06 57.0 225 30.2
Actinidia16982 Actinidia chinensis HOM05D002661 ORTHO05D002786 2.3e-06 56.6 170 30.6
Duzib187G0363 Durio zibethinus HOM05D002661 ORTHO05D002786 2.3e-06 56.6 203 33.5
SGA_v2.0_scaffold92G28240 Striga asiatica HOM05D002661 ORTHO05D002786 2.3e-06 56.6 197 37.1
RcHm_v2.0_Chr6g0302771 Rosa chinensis HOM05D002661 ORTHO05D002786 4.0e-06 55.8 212 37.3
Thecc.01G019200 Theobroma cacao HOM05D002661 ORTHO05D002786 5.2e-06 55.5 203 29.1
PGR031G0175 Punica granatum HOM05D002661 ORTHO05D002786 6.8e-06 55.1 236 30.5


User provided reference genes

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