Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 0.0e+00 1219.9 628 100.0
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 0.0e+00 1214.5 628 97.8
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 0.0e+00 1213.4 628 97.8
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 0.0e+00 1207.2 629 97.5
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 0.0e+00 1204.9 631 99.2
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 0.0e+00 1159.8 628 93.3
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 0.0e+00 1094.7 629 88.9
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 0.0e+00 1085.9 631 87.5
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 0.0e+00 1085.5 630 87.5
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 0.0e+00 1076.6 630 87.3
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 3.3e-302 1041.2 628 84.9
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 1.7e-295 1018.8 626 81.9
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 1.1e-289 999.6 630 81.7
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 2.1e-272 942.2 661 72.2
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 3.9e-271 937.9 656 72.4
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 1.2e-269 932.9 661 71.6
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 2.0e-267 925.6 655 70.7
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 1.7e-266 922.5 656 71.3
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.7e-266 922.5 658 70.8
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 2.2e-266 922.2 663 69.7
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 4.9e-266 921.0 656 71.3
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 6.4e-266 920.6 658 70.7
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.9e-265 919.1 658 70.4
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 5.4e-265 917.5 652 71.5
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 7.1e-265 917.1 658 70.4
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 1.2e-264 916.4 654 70.3
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 3.5e-264 914.8 660 69.4
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 4.6e-264 914.4 660 70.8
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 3.0e-263 911.8 672 69.6
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 3.0e-263 911.8 667 70.0
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 8.7e-263 910.2 663 68.8
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 6.2e-261 904.0 659 68.9
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 5.3e-260 901.0 635 72.1
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 6.9e-260 900.6 654 68.5
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 1.5e-259 899.4 653 70.4
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 4.5e-259 897.9 637 70.3
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 1.3e-258 896.3 621 71.7
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 1.7e-258 896.0 676 68.2
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 1.7e-258 896.0 659 68.6
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 2.1e-256 889.0 646 69.2
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 2.1e-256 889.0 657 70.2
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 2.7e-256 888.6 633 69.8
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 6.0e-256 887.5 671 68.6
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 7.9e-256 887.1 632 69.6
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 1.0e-255 886.7 652 68.1
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.3e-255 886.3 633 69.7
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 1.8e-255 885.9 634 69.4
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 3.9e-255 884.8 634 68.8
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 1.1e-254 883.2 657 69.9
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 7.4e-254 880.6 661 66.9
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 9.6e-254 880.2 655 68.9
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 1.3e-253 879.8 652 67.3
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 1.6e-253 879.4 641 69.6
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 6.2e-253 877.5 636 69.2
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 6.2e-253 877.5 660 67.3
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 1.8e-252 875.9 653 66.8
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 6.9e-252 874.0 633 69.7
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 9.0e-252 873.6 660 66.4
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 1.5e-251 872.8 638 67.7
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.5e-251 872.8 642 68.2
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 1.5e-251 872.8 650 67.2
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 2.0e-251 872.5 634 69.9
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 3.4e-251 871.7 656 67.4
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.3e-250 869.8 653 67.2
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 8.4e-250 867.1 656 66.9
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.1e-249 866.7 656 67.8
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 1.1e-249 866.7 656 66.9
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 1.4e-249 866.3 655 67.2
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 4.2e-249 864.8 605 72.4
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 4.2e-249 864.8 603 71.6
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 5.5e-249 864.4 639 68.4
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 9.3e-249 863.6 655 66.9
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 1.2e-248 863.2 654 67.1
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 6.0e-248 860.9 633 67.8
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.8e-247 859.4 653 67.2
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 8.7e-247 857.1 607 70.8
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.9e-246 855.9 653 66.6
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 2.5e-246 855.5 605 70.7
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 3.3e-246 855.1 654 66.5
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 1.3e-245 853.2 648 67.0
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.8e-244 849.4 654 65.4
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 6.9e-244 847.4 592 70.6
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 7.6e-243 844.0 653 64.8
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 1.3e-242 843.2 608 69.6
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 2.5e-241 839.0 581 71.1
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 1.2e-240 836.6 524 77.7
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 1.6e-240 836.3 629 67.7
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 3.1e-236 822.0 464 89.7
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 9.0e-236 820.5 604 68.2
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 1.5e-235 819.7 607 67.4
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 1.7e-234 816.2 608 67.1
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 1.7e-234 816.2 665 63.2
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 2.4e-228 795.8 609 65.2
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 5.5e-225 784.6 520 73.3
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 2.8e-221 772.3 722 56.0
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 4.7e-216 755.0 652 61.3
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 1.5e-214 750.0 636 61.2
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 5.7e-214 748.0 655 59.2
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 1.5e-206 723.4 655 59.2
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 1.4e-199 700.3 735 51.4
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 7.0e-196 688.0 627 58.1
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 4.5e-195 685.3 561 61.7
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 1.3e-194 683.7 450 75.6
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 4.2e-193 678.7 750 47.3
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 5.5e-193 678.3 752 47.3
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 3.0e-191 672.5 532 61.7
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 2.7e-187 659.4 529 61.6
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 5.2e-183 645.2 629 53.9
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.6e-158 563.1 524 57.3
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 2.2e-157 560.1 553 54.4
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.9e-157 559.7 427 67.9
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 4.0e-135 486.1 418 60.0
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 3.1e-119 433.3 215 100.0
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 6.5e-117 425.6 375 61.3
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 2.2e-109 400.6 309 67.6
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 1.9e-108 397.5 267 73.0
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 5.1e-106 389.4 321 61.7
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 1.7e-88 331.3 238 68.1
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 5.4e-79 299.7 342 49.4
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 7.7e-78 295.8 540 38.5
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 4.0e-58 230.3 148 71.6
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 6.4e-40 169.9 437 30.2
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 4.2e-31 140.6 121 57.0
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 6.6e-29 133.3 139 51.1
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.2e-09 69.3 50 74.0
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.5e-09 68.9 138 34.1
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 4.5e-09 67.4 56 62.5
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 2.5e-07 61.6 43 69.8


User provided reference genes

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