Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 1.1e-113 413.3 209 100.0
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 1.1e-113 413.3 209 100.0
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 1.1e-113 413.3 209 100.0
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 6.1e-112 407.5 209 98.6
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 9.7e-110 400.2 212 96.7
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 5.7e-102 374.4 212 91.5
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 5.7e-102 374.4 212 91.5
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 9.1e-100 367.1 213 88.3
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 9.1e-92 340.5 213 83.6
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 1.6e-91 339.7 213 85.4
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 3.5e-91 338.6 209 86.6
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 3.2e-89 332.0 213 82.6
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 1.6e-88 329.7 216 81.0
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 1.4e-87 326.6 215 80.9
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 1.1e-81 307.0 212 76.9
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 5.5e-81 304.7 212 76.4
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 9.5e-81 303.9 213 75.1
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 1.6e-80 303.1 215 76.7
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 2.8e-80 302.4 212 75.5
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 3.6e-72 275.4 214 69.6
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 1.7e-69 266.5 208 67.8
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 9.2e-60 234.2 213 64.3
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 3.9e-42 175.6 95 92.6
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 3.9e-42 175.6 95 92.6
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 3.9e-42 175.6 95 92.6
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 1.3e-40 170.6 223 48.4
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 2.1e-40 169.9 221 52.5
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.1e-40 169.9 218 50.9
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 2.1e-40 169.9 193 53.9
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 4.8e-40 168.7 171 59.6
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 6.2e-40 168.3 222 50.0
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 6.2e-40 168.3 223 50.7
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 6.2e-40 168.3 215 50.7
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 1.4e-39 167.2 211 48.8
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 1.4e-39 167.2 220 52.7
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 1.8e-39 166.8 225 48.9
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 1.8e-39 166.8 220 49.5
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 2.4e-39 166.4 215 49.8
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 3.1e-39 166.0 187 52.4
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 3.4e-38 162.5 217 47.9
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 3.4e-38 162.5 191 52.9
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 5.8e-38 161.8 224 47.8
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 1.7e-37 160.2 217 47.9
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 2.2e-37 159.8 170 55.3
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 2.2e-37 159.8 213 46.9
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 2.9e-37 159.5 212 46.2
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 4.9e-37 158.7 187 53.5
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 8.4e-37 157.9 168 57.7
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 8.4e-37 157.9 186 51.1
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.1e-36 157.5 218 47.7
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 1.9e-36 156.8 188 54.3
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 2.4e-36 156.4 191 51.3
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 3.2e-36 156.0 220 49.5
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 3.2e-36 156.0 220 46.8
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 3.2e-36 156.0 212 47.6
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 5.4e-36 155.2 205 46.8
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 5.4e-36 155.2 189 51.3
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 1.2e-35 154.1 216 47.2
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 1.6e-35 153.7 226 45.1
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.6e-35 153.7 226 46.5
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 2.7e-35 152.9 218 49.1
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 1.7e-34 150.2 217 47.0
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 6.6e-34 148.3 214 45.8
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 8.7e-34 147.9 196 51.0
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 1.9e-33 146.7 170 52.4
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 2.5e-33 146.4 221 48.0
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 2.5e-33 146.4 218 44.5
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 3.3e-33 146.0 209 45.0
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 4.3e-33 145.6 215 45.6
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 1.3e-32 144.1 225 44.0
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 1.3e-32 144.1 196 50.0
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 1.6e-32 143.7 215 45.6
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 1.6e-32 143.7 194 50.5
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.1e-32 143.3 122 62.3
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 2.8e-32 142.9 92 75.0
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.2e-32 141.7 216 44.9
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.1e-32 141.4 216 44.9
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 8.1e-32 141.4 188 50.0
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.4e-31 140.6 216 44.9
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 1.8e-31 140.2 92 72.8
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.8e-31 140.2 216 44.9
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.4e-31 139.8 190 46.8
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 2.4e-31 139.8 213 47.9
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 3.1e-31 139.4 174 48.3
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 5.3e-31 138.7 217 45.6
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 6.9e-31 138.3 218 43.6
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 1.5e-30 137.1 219 44.3
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 2.6e-30 136.3 216 44.0
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.6e-30 136.3 216 44.0
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 4.5e-30 135.6 173 49.7
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.3e-29 134.0 186 41.9
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.7e-29 133.7 206 43.7
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 1.9e-28 130.2 249 42.6
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 3.2e-28 129.4 247 37.7
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 3.2e-28 129.4 91 68.1
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.2e-27 127.5 105 60.0
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 2.1e-27 126.7 168 47.0
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 2.7e-27 126.3 254 39.8
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 6.0e-27 125.2 173 46.8
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 2.3e-26 123.2 215 41.9
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 3.9e-26 122.5 179 46.4
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 5.1e-26 122.1 199 41.7
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 5.1e-26 122.1 267 35.2
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 1.1e-25 120.9 153 45.8
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 1.5e-25 120.6 88 62.5
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.5e-25 119.8 172 47.1
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 5.6e-25 118.6 153 46.4
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 7.4e-25 118.2 206 39.8
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 1.3e-24 117.5 218 39.4
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 7.6e-22 108.2 87 60.9
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 3.8e-21 105.9 210 40.0
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 4.9e-21 105.5 69 79.7
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.1e-20 104.4 200 41.5
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 6.0e-19 98.6 100 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 1.9e-17 93.6 165 39.4
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 3.7e-16 89.4 132 43.9
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 1.8e-15 87.0 89 43.8
BolC2t09172H Brassica oleracea HOM05D000194 ORTHO05D007246 4.0e-15 85.9 71 71.8
BcaC03g15457 Brassica carinata HOM05D000194 ORTHO05D000069 1.2e-14 84.3 59 83.1
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 6.5e-13 78.6 160 35.6
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 8.4e-13 78.2 214 34.1
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 1.9e-12 77.0 210 33.3
A05p27070 Brassica napus HOM05D005829 ORTHO05D007246 4.2e-12 75.9 63 65.1
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 1.6e-11 73.9 87 47.1
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 1.6e-11 73.9 87 47.1
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 6.7e-10 68.6 38 73.7
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 1.1e-09 67.8 131 38.2
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 8.2e-08 61.6 115 35.7
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 6.9e-07 58.5 68 45.6


User provided reference genes

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