Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15360 Brassica carinata HOM05D000141 ORTHO05D001311 1.7e-28 128.6 65 100.0
BcaC03g15362 Brassica carinata HOM05D000141 ORTHO05D001311 1.7e-28 128.6 65 100.0
C02p29670 Brassica napus HOM05D000141 ORTHO05D001311 1.7e-28 128.6 65 100.0
BcaB05g24734 Brassica carinata HOM05D000141 ORTHO05D001311 1.4e-27 125.6 65 98.5
BolC2t09016H Brassica oleracea HOM05D000141 ORTHO05D001311 1.4e-27 125.6 65 98.5
A02p17850 Brassica napus HOM05D000141 ORTHO05D001311 7.1e-27 123.2 65 96.9
BraA02t06835Z Brassica rapa HOM05D000141 ORTHO05D001311 7.1e-27 123.2 65 96.9
Sp5g27340 Schrenkiella parvula HOM05D000141 ORTHO05D001311 4.8e-23 110.5 65 89.2
BcaB03g14969 Brassica carinata HOM05D000141 ORTHO05D001311 4.0e-22 107.5 59 93.2
A07p38380 Brassica napus HOM05D000141 ORTHO05D001311 5.3e-22 107.1 61 90.2
BraA07t31399Z Brassica rapa HOM05D000141 ORTHO05D001311 5.3e-22 107.1 61 90.2
BcaC08g46672 Brassica carinata HOM05D000141 ORTHO05D001311 2.0e-21 105.1 59 91.5
C06p46420 Brassica napus HOM05D000141 ORTHO05D001311 2.0e-21 105.1 59 91.5
BolC6t39689H Brassica oleracea HOM05D000141 ORTHO05D001311 2.0e-21 105.1 59 91.5
THA.LOC104812281 Tarenaya hassleriana HOM05D000141 ORTHO05D001311 4.6e-18 94.0 65 75.4
AT1G72250 Arabidopsis thaliana HOM05D000141 ORTHO05D001311 1.8e-17 92.0 66 78.8
Carub.0002s1906 Capsella rubella HOM05D000141 ORTHO05D001311 2.3e-17 91.7 65 76.9
Aa31LG4G2630 Aethionema arabicum HOM05D000141 ORTHO05D001311 8.7e-17 89.7 66 77.3
CARHR065110 Cardamine hirsuta HOM05D000141 ORTHO05D001311 5.7e-16 87.0 66 77.3
AL2G31920 Arabidopsis lyrata HOM05D000141 ORTHO05D001311 1.6e-15 85.5 66 74.2
Potri.001G436200 Populus trichocarpa HOM05D000141 ORTHO05D001311 2.2e-12 75.1 54 72.2
Potri.011G140000 Populus trichocarpa HOM05D000141 ORTHO05D001311 5.0e-12 73.9 54 70.4
Sabra11G0126100 Salix brachista HOM05D000141 ORTHO05D001311 6.5e-12 73.6 54 68.5
Cpa.g.sc229.5 Carica papaya HOM05D000141 ORTHO05D001311 1.9e-11 72.0 54 72.2
Manes.03G090900 Manihot esculenta HOM05D000141 ORTHO05D001311 3.2e-11 71.2 54 64.8
Manes.15G101400 Manihot esculenta HOM05D000141 ORTHO05D001311 3.2e-11 71.2 54 66.7
Prupe.4G144400 Prunus persica HOM05D000141 ORTHO05D001311 5.5e-11 70.5 52 69.2
Actinidia20594 Actinidia chinensis HOM05D000141 ORTHO05D001311 9.3e-11 69.7 54 70.4
Haze_08513 Corylus avellana HOM05D000141 ORTHO05D001311 1.6e-10 68.9 54 61.1
Cfa019444 Carpinus fangiana HOM05D000141 ORTHO05D001311 2.1e-10 68.6 54 61.1
QL04p072968 Quercus lobata HOM05D000141 ORTHO05D001311 2.1e-10 68.6 62 62.9
Ciclev10018793m.g Citrus clementina HOM05D000141 ORTHO05D001311 2.7e-10 68.2 54 64.8
Atru.chr2.1842 Acer truncatum HOM05D000141 ORTHO05D001311 4.6e-10 67.4 65 61.5
Duzib213G0002 Durio zibethinus HOM05D000141 ORTHO05D001311 4.6e-10 67.4 54 68.5
Lalb_Chr20g0108861 Lupinus albus HOM05D000141 ORTHO05D001311 4.6e-10 67.4 66 56.1
SalBow8G4088 Salvia bowleyana HOM05D000141 ORTHO05D001311 7.9e-10 66.6 54 64.8
Glyma.15G252800 Glycine max HOM05D000141 ORTHO05D001311 1.3e-09 65.9 58 62.1
Nn3g20438 Nelumbo nucifera HOM05D000141 ORTHO05D001311 2.3e-09 65.1 54 64.8
arahy.Tifrunner.gnm1.ann1.RXP99Y Arachis hypogaea HOM05D000141 ORTHO05D001311 5.1e-09 63.9 66 57.6
Gohir.A01G036700 Gossypium hirsutum HOM05D000141 ORTHO05D001311 5.1e-09 63.9 54 70.4
Gohir.D01G024000 Gossypium hirsutum HOM05D000141 ORTHO05D001311 5.1e-09 63.9 54 70.4
Gorai.002G032500 Gossypium raimondii HOM05D000141 ORTHO05D001311 5.1e-09 63.9 54 70.4
RcHm_v2.0_Chr5g0027091 Rosa chinensis HOM05D000141 ORTHO05D001311 5.1e-09 63.9 53 62.3
TAR512G0002 Trochodendron aralioides HOM05D000141 ORTHO05D001311 5.1e-09 63.9 62 61.3
FvH4_3g16110 Fragaria vesca HOM05D000141 ORTHO05D001311 6.7e-09 63.5 53 62.3
FAN11G1205 Fragaria x ananassa HOM05D000141 ORTHO05D001311 6.7e-09 63.5 53 62.3
FAN21G3407 Fragaria x ananassa HOM05D000141 ORTHO05D001311 6.7e-09 63.5 53 62.3
FAN25G3242 Fragaria x ananassa HOM05D000141 ORTHO05D001311 6.7e-09 63.5 53 62.3
MD10G1197400 Malus domestica HOM05D000141 ORTHO05D001311 6.7e-09 63.5 52 63.5
vmacro12029 Vaccinium macrocarpon HOM05D000141 ORTHO05D001311 6.7e-09 63.5 55 63.6
Sed0016222 Sechium edule HOM05D000141 ORTHO05D001311 8.7e-09 63.2 56 66.1
PGSC0003DMG401007845 Solanum tuberosum HOM05D000141 ORTHO05D001311 8.7e-09 63.2 47 72.3
Ah.06g187390 Amaranthus hybridus HOM05D000141 ORTHO05D001311 1.1e-08 62.8 60 58.3
arahy.Tifrunner.gnm1.ann1.36GBYI Arachis hypogaea HOM05D000141 ORTHO05D001311 1.1e-08 62.8 66 56.1
CANSAT56G1181 Cannabis sativa HOM05D000141 ORTHO05D001311 1.5e-08 62.4 60 61.7
CANSAT56G4238 Cannabis sativa HOM05D000141 ORTHO05D001311 1.5e-08 62.4 60 61.7
TAR624G0806 Trochodendron aralioides HOM05D000141 ORTHO05D001311 1.5e-08 62.4 54 63.0
AUR62037929 Chenopodium quinoa HOM05D000141 ORTHO05D001311 1.9e-08 62.0 54 61.1
AUR62042369 Chenopodium quinoa HOM05D000141 ORTHO05D001311 1.9e-08 62.0 54 61.1
Thecc.07G157900 Theobroma cacao HOM05D000141 ORTHO05D001311 1.9e-08 62.0 55 67.3
Eucgr.F03192 Eucalyptus grandis HOM05D000141 ORTHO05D001311 2.5e-08 61.6 62 53.2
Rhsim06G0183600 Rhododendron simsii HOM05D000141 ORTHO05D001311 2.5e-08 61.6 55 63.6
FAN16G3344 Fragaria x ananassa HOM05D000141 ORTHO05D001311 3.3e-08 61.2 53 60.4
Glyma.08G174300 Glycine max HOM05D000141 ORTHO05D001311 3.3e-08 61.2 59 61.0
MD05G1213600 Malus domestica HOM05D000141 ORTHO05D001311 3.3e-08 61.2 52 59.6
PGR031G0118 Punica granatum HOM05D000141 ORTHO05D001311 3.3e-08 61.2 52 63.5
Cc05_g10030 Coffea canephora HOM05D000141 ORTHO05D001311 4.3e-08 60.8 58 60.3
COL.COLO4_07051 Corchorus olitorius HOM05D000141 ORTHO05D001311 5.7e-08 60.5 62 58.1
Phvul.005G054500 Phaseolus vulgaris HOM05D000141 ORTHO05D001311 5.7e-08 60.5 58 62.1
Solyc12g011290.2 Solanum lycopersicum HOM05D000141 ORTHO05D001311 5.7e-08 60.5 55 56.4
Sopen12g006620 Solanum pennellii HOM05D000141 ORTHO05D001311 5.7e-08 60.5 55 56.4
TWI38G2413 Tripterygium wilfordii HOM05D000141 ORTHO05D001311 7.4e-08 60.1 55 65.5
VMungo1080G0426 Vigna mungo HOM05D000141 ORTHO05D001311 1.3e-07 59.3 57 61.4
Lalb_Chr25g0285251 Lupinus albus HOM05D000141 ORTHO05D001311 1.6e-07 58.9 63 50.8
Sed0022606 Sechium edule HOM05D000141 ORTHO05D001311 1.6e-07 58.9 61 59.0
Migut.M00669 Erythranthe guttata HOM05D000141 ORTHO05D001311 2.2e-07 58.5 62 50.0
CiPaw.12G006000 Carya illinoinensis HOM05D000141 ORTHO05D001311 2.8e-07 58.2 59 61.0
CsaV3_4G007670 Cucumis sativus L. HOM05D000141 ORTHO05D001311 3.7e-07 57.8 55 63.6
EL10Ac4g08530 Beta vulgaris HOM05D000141 ORTHO05D001311 4.8e-07 57.4 53 58.5
Nitab4.5_0000505g0070 Nicotiana tabacum HOM05D000141 ORTHO05D001311 8.2e-07 56.6 55 54.5
Nitab4.5_0000639g0260 Nicotiana tabacum HOM05D000141 ORTHO05D001311 8.2e-07 56.6 55 54.5
Dinv26638 Davidia involucrata HOM05D000141 ORTHO05D001311 1.4e-06 55.8 54 59.3
ClCG07G010630 Citrullus lanatus HOM05D000141 ORTHO05D001311 1.8e-06 55.5 55 63.6


User provided reference genes

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