Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 0.0e+00 1131.3 579 100.0
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 0.0e+00 1131.3 579 100.0
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 0.0e+00 1131.3 579 100.0
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 1.9e-301 1038.5 579 92.2
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 7.4e-301 1036.6 579 92.1
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 3.5e-282 974.5 606 84.8
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 9.4e-272 939.9 603 81.8
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 4.0e-270 934.5 580 85.7
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 1.6e-263 912.5 600 82.5
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 3.6e-263 911.4 590 82.7
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 1.4e-262 909.4 590 82.5
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 1.3e-260 902.9 589 81.7
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 2.2e-260 902.1 589 81.5
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 1.3e-257 892.9 589 81.7
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 6.3e-252 874.0 598 79.6
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 6.8e-246 854.0 609 77.5
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 5.4e-243 844.3 598 77.6
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 2.3e-241 839.0 602 77.9
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.7e-226 788.9 605 71.4
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.8e-220 768.5 596 69.0
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 4.6e-210 734.9 611 66.1
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 1.1e-203 713.8 525 73.0
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 1.1e-203 713.8 609 65.7
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 3.2e-195 685.6 539 67.0
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 1.1e-192 677.2 586 63.8
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 2.5e-192 676.0 494 71.1
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 3.7e-191 672.2 554 64.6
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 6.2e-191 671.4 492 71.1
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 6.9e-190 667.9 495 70.3
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 9.0e-190 667.5 619 61.2
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.2e-189 667.2 586 63.0
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 7.6e-189 664.5 591 63.1
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 1.0e-188 664.1 515 69.3
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 2.9e-188 662.5 546 65.9
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 3.8e-188 662.1 495 71.3
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 1.1e-187 660.6 564 64.9
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 4.2e-187 658.7 546 64.3
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.2e-186 657.1 549 64.5
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.6e-186 656.8 492 70.1
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 7.9e-186 654.4 615 61.0
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 1.3e-185 653.7 530 66.8
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 1.8e-185 653.3 585 61.0
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.3e-185 652.9 615 60.3
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 2.3e-185 652.9 502 69.1
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 3.0e-185 652.5 524 65.6
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 8.7e-185 651.0 440 74.5
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 1.5e-184 650.2 466 72.1
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 2.5e-184 649.4 412 78.4
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 9.7e-184 647.5 608 61.3
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 9.7e-184 647.5 459 72.1
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 6.3e-183 644.8 609 60.4
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 8.2e-183 644.4 583 61.9
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 1.1e-182 644.0 600 61.0
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 1.4e-182 643.7 414 77.8
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 1.8e-182 643.3 452 72.6
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 9.0e-182 641.0 447 72.9
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 9.0e-182 641.0 417 76.7
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.2e-181 640.6 425 76.0
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 2.0e-181 639.8 542 64.2
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 3.4e-181 639.0 498 69.1
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 4.5e-181 638.6 607 60.0
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 7.7e-181 637.9 480 70.0
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 1.0e-180 637.5 591 60.1
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.3e-180 637.1 602 59.3
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 1.3e-180 637.1 529 66.0
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 1.3e-180 637.1 578 61.6
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 2.2e-180 636.3 429 74.6
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 2.9e-180 636.0 553 62.9
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 3.8e-180 635.6 588 60.4
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 5.0e-180 635.2 503 67.4
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 8.5e-180 634.4 430 74.7
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 1.1e-179 634.0 427 73.8
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 1.9e-179 633.3 595 59.5
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 2.5e-179 632.9 427 74.0
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 4.2e-179 632.1 557 62.8
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 9.4e-179 630.9 617 58.8
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 1.0e-177 627.5 407 76.2
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 1.4e-177 627.1 615 58.9
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 3.9e-177 625.5 416 76.0
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 3.9e-177 625.5 492 67.3
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 5.1e-177 625.2 457 70.5
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 6.7e-177 624.8 535 61.3
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 1.1e-176 624.0 537 61.5
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.5e-176 623.6 569 61.0
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 1.5e-176 623.6 427 73.8
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 2.5e-176 622.9 407 76.9
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.3e-176 622.1 426 74.4
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 5.7e-176 621.7 406 76.6
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 5.7e-176 621.7 406 76.6
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 5.7e-176 621.7 429 73.0
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 9.7e-176 620.9 414 74.2
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.7e-175 620.2 469 68.7
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 2.2e-175 619.8 615 58.9
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 2.2e-175 619.8 587 61.2
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 2.8e-175 619.4 561 61.3
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 4.8e-175 618.6 457 69.8
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.8e-174 616.7 602 58.5
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.1e-174 615.9 412 74.0
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.1e-174 615.5 413 74.3
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 5.3e-174 615.1 536 63.6
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 5.3e-174 615.1 452 69.9
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 6.9e-174 614.8 423 73.0
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 9.1e-174 614.4 423 73.0
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 1.5e-173 613.6 542 61.1
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.5e-173 613.6 494 66.2
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 7.7e-173 611.3 481 66.5
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.0e-172 610.9 601 59.2
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 1.0e-172 610.9 498 64.5
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 1.0e-172 610.9 409 75.1
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 2.9e-172 609.4 408 73.8
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.9e-172 609.4 406 75.4
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.4e-171 607.1 573 58.5
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 1.4e-171 607.1 412 73.3
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.4e-171 607.1 596 59.2
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 1.9e-171 606.7 500 64.8
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 2.5e-171 606.3 603 57.7
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 3.2e-171 605.9 413 73.4
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 4.2e-171 605.5 572 58.2
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 9.4e-171 604.4 539 60.7
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 1.2e-170 604.0 421 72.2
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.4e-169 600.5 575 58.1
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.4e-169 600.5 592 57.1
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 1.8e-169 600.1 547 60.3
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 2.0e-168 596.7 502 62.2
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 2.6e-168 596.3 584 58.4
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 7.4e-168 594.7 422 70.6
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 7.4e-168 594.7 423 71.6
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 9.1e-166 587.8 372 77.2
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 7.7e-165 584.7 408 71.1
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 1.9e-163 580.1 531 59.9
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 2.7e-162 576.2 371 76.3
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.8e-158 563.5 363 77.1
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 1.5e-155 553.9 594 53.9
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.4e-153 547.4 396 68.2
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 2.8e-151 539.7 399 70.4
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.4e-150 536.6 424 64.4
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.2e-144 517.7 375 69.9
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 1.2e-141 507.7 398 65.3
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.6e-141 507.3 356 69.4
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 7.7e-141 505.0 499 55.5
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 1.6e-130 470.7 368 64.9
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.7e-127 460.7 374 64.7
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.1e-126 458.0 303 72.6
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 2.1e-109 400.6 210 92.9
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 2.9e-103 380.2 198 93.4
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 2.9e-95 353.6 378 50.8
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-92 344.4 181 92.3
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 7.1e-78 295.8 196 73.5
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 3.4e-72 276.9 248 59.7
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 5.9e-72 276.2 160 80.6
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.2e-71 274.2 157 81.5
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.2e-71 274.2 157 81.5
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.0e-63 248.8 193 64.2
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 2.9e-63 247.3 378 38.1
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 6.5e-63 246.1 184 72.3
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 5.7e-51 206.5 182 53.8
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 1.3e-50 205.3 129 81.4
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-50 204.9 152 73.7
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 4.1e-49 200.3 110 90.9
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.2e-48 198.7 152 69.7
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.9e-46 191.4 273 37.7
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.8e-42 176.8 127 74.0
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 4.0e-36 157.1 110 69.1
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 5.2e-36 156.8 98 82.7
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 7.5e-35 152.9 84 86.9
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 1.4e-33 148.7 168 54.8
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 9.1e-33 146.0 84 82.1
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 2.7e-32 144.4 216 38.4
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.9e-30 138.3 89 74.2
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 3.5e-24 117.5 101 61.4
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 1.6e-21 108.6 121 52.1
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 1.1e-12 79.3 50 82.0
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 1.8e-12 78.6 182 31.9
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 6.4e-10 70.1 111 43.2
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 5.4e-09 67.0 85 48.2
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 6.6e-07 60.1 32 81.2
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 5.6e-06 57.0 55 56.4


User provided reference genes

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