Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 0.0e+00 1159.4 587 100.0
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 0.0e+00 1155.2 584 100.0
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 0.0e+00 1155.2 584 100.0
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 0.0e+00 1114.0 585 96.9
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 0.0e+00 1110.5 585 96.6
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 0.0e+00 1089.3 584 95.2
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 1.2e-303 1045.8 588 91.8
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 1.1e-296 1022.7 588 89.5
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 1.9e-296 1021.9 587 90.3
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 8.0e-295 1016.5 584 89.6
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 8.9e-294 1013.1 587 89.3
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 1.3e-292 1009.2 588 89.1
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 7.8e-282 973.4 588 85.2
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 5.4e-275 950.7 586 83.6
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.6e-261 905.2 585 78.3
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 2.4e-259 898.7 585 77.8
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 1.3e-257 892.9 584 77.6
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 2.3e-257 892.1 585 77.1
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.5e-256 889.4 579 78.1
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 4.0e-254 881.3 586 76.3
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 5.3e-254 880.9 588 76.5
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 1.3e-252 876.3 588 76.4
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 4.2e-251 871.3 587 75.8
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 4.6e-250 867.8 587 74.8
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 6.0e-250 867.5 584 75.0
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 3.0e-249 865.1 586 74.7
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 4.3e-248 861.3 587 74.8
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 9.6e-248 860.1 588 74.8
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 1.6e-247 859.4 587 74.4
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 1.6e-247 859.4 588 75.3
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 3.7e-247 858.2 584 75.7
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 1.4e-246 856.3 598 73.1
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 6.9e-246 854.0 588 73.6
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 1.5e-245 852.8 586 73.4
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 1.1e-243 846.7 590 72.2
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 1.9e-243 845.9 587 72.9
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 7.1e-243 844.0 596 72.3
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 2.7e-242 842.0 589 72.7
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 1.0e-241 840.1 585 72.8
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 3.3e-240 835.1 585 72.3
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 5.7e-240 834.3 584 72.4
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 7.4e-240 833.9 587 71.4
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 1.3e-239 833.2 593 72.8
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 1.3e-239 833.2 589 71.8
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 1.6e-239 832.8 591 72.1
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 6.2e-239 830.9 596 71.3
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 6.2e-239 830.9 590 71.5
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 1.4e-238 829.7 588 71.9
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 5.3e-238 827.8 586 71.2
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 1.2e-237 826.6 586 71.3
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 7.6e-237 823.9 583 71.7
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.0e-236 823.5 593 72.2
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.7e-236 822.8 593 72.3
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.8e-236 821.6 593 72.3
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 1.4e-235 819.7 573 71.6
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.9e-235 819.3 585 71.1
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 1.9e-235 819.3 584 70.0
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 1.9e-235 819.3 587 70.7
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 1.9e-235 819.3 527 76.5
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 3.2e-235 818.5 557 73.1
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 5.5e-235 817.8 588 71.9
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 9.3e-235 817.0 555 73.5
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 4.6e-234 814.7 585 70.8
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 4.6e-234 814.7 582 70.8
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 7.9e-234 813.9 528 75.8
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.9e-233 811.6 616 69.0
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 3.9e-233 811.6 527 75.7
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 3.3e-232 808.5 626 67.4
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 9.7e-232 807.0 547 73.9
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 1.6e-231 806.2 585 69.6
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 3.7e-231 805.1 584 70.7
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.4e-230 803.1 498 82.5
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 2.4e-230 802.4 590 70.2
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 5.3e-230 801.2 529 75.6
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 6.9e-230 800.8 584 72.4
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 2.2e-228 795.8 588 69.2
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 6.5e-228 794.3 529 74.7
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 3.2e-227 792.0 585 69.6
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 5.1e-225 784.6 530 73.4
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 4.8e-223 778.1 627 67.0
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 6.9e-222 774.2 531 72.3
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 2.7e-218 762.3 525 72.6
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.4e-217 760.0 584 67.0
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 8.8e-217 757.3 523 74.8
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 1.7e-215 753.1 581 66.6
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 1.1e-214 750.4 585 66.2
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 1.1e-214 750.4 512 72.9
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 1.8e-214 749.6 525 73.1
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 9.1e-214 747.3 587 67.3
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 1.5e-213 746.5 524 71.9
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 7.7e-213 744.2 526 71.5
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 2.2e-212 742.7 526 70.7
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 7.2e-211 737.6 528 69.9
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 6.1e-210 734.6 471 78.1
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.3e-207 726.9 585 65.1
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 2.8e-207 725.7 531 70.1
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 9.4e-203 710.7 495 72.9
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 1.2e-200 703.7 451 75.2
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 1.6e-197 693.3 433 78.1
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 1.5e-195 686.8 584 64.2
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 1.2e-194 683.7 528 66.9
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 6.8e-193 677.9 498 70.1
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 3.7e-191 672.2 496 67.9
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 1.4e-185 653.7 534 63.5
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 9.8e-184 647.5 492 66.5
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 2.5e-179 632.9 529 62.9
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 1.7e-175 620.2 453 68.7
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.9e-174 616.7 510 63.5
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 3.1e-161 572.8 446 64.6
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 1.5e-152 543.9 394 70.6
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 4.5e-120 436.0 347 61.7
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-86 325.1 394 47.2
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.9e-86 324.3 200 79.0
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-67 260.0 274 52.2
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-53 214.2 195 54.4
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 7.5e-51 206.1 140 73.6
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 1.5e-43 181.8 132 67.4
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 8.6e-39 166.0 89 93.3
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.2e-35 155.6 100 74.0
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 6.2e-29 133.3 88 69.3
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 1.0e-23 115.9 65 84.6
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 4.3e-22 110.5 66 75.8
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.3e-21 109.0 136 45.6
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 2.4e-20 104.8 72 77.8
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 2.4e-20 104.8 72 77.8
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 1.2e-19 102.4 94 63.8
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 1.5e-19 102.1 68 77.9
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 1.5e-19 102.1 68 77.9
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 1.2e-16 92.4 121 42.1
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 3.5e-16 90.9 54 79.6
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 7.9e-16 89.7 63 68.3
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 1.0e-15 89.4 69 66.7
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 2.5e-06 58.2 126 38.9


User provided reference genes

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