Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 9.6e-138 493.8 312 100.0
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 2.6e-135 485.7 322 96.9
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.9e-133 479.6 322 96.0
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 3.2e-125 452.2 323 92.6
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 1.5e-122 443.4 323 86.4
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 1.3e-113 413.7 320 82.5
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 5.5e-109 398.3 326 82.8
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 7.2e-109 397.9 328 81.7
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 2.1e-108 396.4 326 82.5
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 2.1e-108 396.4 326 82.5
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 4.7e-108 395.2 328 79.6
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 5.2e-107 391.7 326 84.4
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 6.3e-105 384.8 329 78.7
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 4.1e-96 355.5 325 72.9
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 6.5e-94 348.2 326 78.2
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 5.5e-93 345.1 328 75.3
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 7.5e-90 334.7 328 75.0
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.8e-63 245.0 323 63.5
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.8e-63 245.0 323 63.5
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.8e-63 245.0 323 63.5
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 2.0e-58 230.3 255 71.0
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 3.4e-58 229.6 257 70.4
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 3.5e-55 219.5 321 59.8
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.7e-46 190.7 295 59.3
C06p37150 Brassica napus HOM05D004533 ORTHO05D005347 6.6e-46 188.7 234 61.1
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 4.3e-45 186.0 323 49.2
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 2.1e-31 140.6 341 48.4
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.8e-30 137.5 348 35.6
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 3.9e-30 136.3 355 45.4
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 6.7e-30 135.6 353 46.7
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 6.7e-30 135.6 346 45.1
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 2.5e-29 133.7 349 44.7
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 4.3e-29 132.9 339 48.7
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 9.6e-29 131.7 344 45.3
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 2.1e-28 130.6 332 40.1
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 2.1e-28 130.6 338 38.8
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 8.1e-28 128.6 355 45.4
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.1e-27 128.3 344 45.6
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.4e-27 127.1 349 38.4
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 2.4e-27 127.1 353 39.9
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 3.1e-27 126.7 344 43.3
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 5.8e-26 122.5 337 46.6
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 5.8e-26 122.5 337 43.9
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 7.6e-26 122.1 349 38.4
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 7.6e-26 122.1 326 34.4
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 9.9e-26 121.7 300 36.7
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 1.7e-25 120.9 348 37.9
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 2.9e-25 120.2 355 38.6
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 3.8e-25 119.8 355 40.8
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 4.9e-25 119.4 341 39.0
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 4.9e-25 119.4 339 39.8
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 7.1e-24 115.5 343 45.5
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 9.3e-24 115.2 343 45.5
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.2e-23 114.8 344 33.1
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.1e-23 114.0 346 33.8
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.1e-23 114.0 344 33.1
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.1e-23 114.0 344 33.1
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 2.7e-23 113.6 356 44.1
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 2.7e-23 113.6 343 45.5
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.7e-23 113.6 343 45.5
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 2.7e-23 113.6 319 33.2
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 2.7e-23 113.6 355 44.2
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 4.6e-23 112.8 343 36.4
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 4.6e-23 112.8 316 41.8
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 6.0e-23 112.5 341 40.8
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 7.9e-23 112.1 353 32.0
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.0e-22 111.7 344 33.1
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.0e-22 111.7 351 43.3
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 2.3e-22 110.5 310 41.9
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.3e-22 110.5 314 43.9
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 3.0e-22 110.2 355 31.8
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 3.9e-22 109.8 352 37.8
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.1e-22 109.4 350 33.4
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 8.7e-22 108.6 343 44.6
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 1.1e-21 108.2 318 40.9
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 1.1e-21 108.2 318 40.9
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 1.5e-21 107.8 331 39.3
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 1.9e-21 107.5 349 29.8
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 1.9e-21 107.5 312 44.6
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 5.6e-21 105.9 340 44.7
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.6e-20 104.4 286 40.9
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.7e-20 103.2 323 35.6
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 4.8e-20 102.8 329 31.9
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 8.2e-20 102.1 330 37.9
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 1.8e-19 100.9 342 30.7
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 3.1e-19 100.1 334 36.2
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 3.1e-19 100.1 335 34.0
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 5.3e-19 99.4 340 30.6
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.3e-19 99.4 297 39.7
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 9.0e-19 98.6 286 39.9
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 2.0e-18 97.4 342 35.7
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.0e-18 97.4 269 30.5
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.4e-18 96.7 313 37.4
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 5.8e-18 95.9 367 37.3
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.8e-18 95.9 317 33.1
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 1.0e-17 95.1 333 39.0
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.3e-17 94.7 319 36.4
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.3e-17 94.7 315 40.3
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 3.8e-17 93.2 343 36.2
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 4.9e-17 92.8 331 32.0
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 4.9e-17 92.8 273 30.0
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 8.4e-17 92.0 308 41.2
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 1.1e-16 91.7 347 38.6
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 1.1e-16 91.7 299 35.5
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.5e-16 90.5 332 36.1
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 7.1e-16 89.0 330 40.3
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 9.3e-16 88.6 320 33.1
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.2e-15 88.2 315 34.9
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.6e-15 87.8 319 35.7
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 2.7e-15 87.0 292 29.5
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 2.7e-15 87.0 292 29.5
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.5e-15 86.7 294 38.1
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 4.6e-15 86.3 371 34.2
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.8e-14 84.3 302 36.4
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.3e-14 84.0 315 31.1
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 3.9e-14 83.2 221 32.6
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.5e-13 81.3 256 44.9
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 1.9e-13 80.9 334 30.5
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 3.3e-13 80.1 312 40.1
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.3e-13 80.1 349 29.5
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 7.4e-13 79.0 317 28.7
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 7.4e-13 79.0 323 37.5
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 1.3e-12 78.2 319 36.7
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 2.8e-12 77.0 353 36.8
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 4.8e-12 76.3 356 32.9
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 1.4e-11 74.7 150 40.0
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 9.0e-11 72.0 347 33.7
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 2.0e-10 70.9 338 28.7
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 2.6e-10 70.5 358 32.4
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.4e-10 70.1 124 41.9
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 4.5e-10 69.7 317 41.6
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 2.9e-09 67.0 344 28.8
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 2.9e-09 67.0 140 35.0
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.8e-09 66.6 316 32.3
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 3.8e-09 66.6 320 35.9
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 5.0e-09 66.2 333 28.2
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 5.5e-08 62.8 216 34.7
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 5.5e-08 62.8 391 39.1
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 7.2e-08 62.4 311 28.3
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 9.3e-08 62.0 320 30.9
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 3.6e-07 60.1 140 35.0
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 6.1e-07 59.3 329 38.3
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 6.1e-07 59.3 132 39.4
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 3.0e-06 57.0 342 26.6


User provided reference genes

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