Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 0.0e+00 1418.3 792 100.0
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 0.0e+00 1236.1 904 80.0
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 0.0e+00 1224.9 899 78.4
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 0.0e+00 1210.3 900 78.1
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 0.0e+00 1209.5 910 78.6
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 0.0e+00 1120.1 903 73.5
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 2.2e-311 1072.0 913 70.4
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 3.8e-300 1034.6 902 67.3
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 1.0e-292 1010.0 891 67.6
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 2.3e-292 1008.8 904 65.6
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 3.0e-284 981.9 909 64.0
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 1.1e-265 920.2 908 59.5
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 1.1e-246 857.1 948 55.8
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 6.3e-218 761.5 948 52.0
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 2.5e-214 749.6 939 50.5
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 2.1e-213 746.5 942 49.5
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 1.7e-207 726.9 940 49.1
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 2.9e-207 726.1 941 48.1
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 3.8e-207 725.7 940 49.1
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 1.1e-206 724.2 943 48.4
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 4.7e-205 718.8 909 50.2
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 6.1e-205 718.4 942 48.1
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 1.8e-204 716.8 935 49.9
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 2.3e-204 716.5 951 51.0
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 2.6e-203 713.0 943 49.2
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.2e-202 709.9 944 49.0
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 6.3e-202 708.4 940 50.4
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 5.9e-200 701.8 933 49.9
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 3.2e-198 696.0 1000 46.3
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 3.2e-198 696.0 896 49.0
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 2.7e-197 693.0 948 49.4
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 3.6e-197 692.6 923 48.1
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 1.2e-195 687.6 919 48.3
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 3.4e-195 686.0 869 51.0
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 7.5e-195 684.9 935 48.8
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 2.8e-194 682.9 914 47.9
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 1.1e-193 681.0 943 48.6
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.4e-193 679.9 929 47.6
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 7.0e-193 678.3 950 48.1
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 4.5e-192 675.6 948 47.9
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 2.2e-191 673.3 951 49.1
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.5e-190 670.6 970 46.8
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 1.9e-190 670.2 823 50.1
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 1.9e-190 670.2 911 48.4
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 9.5e-190 667.9 945 47.1
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 9.5e-190 667.9 939 48.2
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 2.1e-189 666.8 928 47.2
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 3.6e-189 666.0 946 48.2
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 3.6e-189 666.0 926 47.1
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 8.0e-189 664.8 934 47.9
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 1.8e-188 663.7 858 51.6
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 2.3e-188 663.3 926 46.7
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.5e-187 660.6 912 49.1
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.7e-186 657.1 955 45.3
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 4.9e-186 655.6 933 46.3
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 4.9e-186 655.6 919 48.0
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 6.3e-186 655.2 936 45.4
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 1.1e-185 654.4 936 49.3
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.4e-185 654.1 887 47.5
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 4.1e-185 652.5 946 47.1
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 9.2e-185 651.4 935 47.6
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 1.2e-184 651.0 935 47.9
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.7e-184 649.8 921 46.3
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 4.5e-184 649.0 910 48.0
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 5.9e-184 648.7 888 46.7
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.3e-183 647.5 956 46.0
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 2.9e-183 646.4 856 48.8
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 3.8e-183 646.0 1073 42.0
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 1.1e-182 644.4 891 45.8
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.9e-182 643.7 885 47.6
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 2.5e-182 643.3 886 48.4
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 3.6e-181 639.4 933 45.3
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.0e-180 637.9 944 46.8
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 1.8e-180 637.1 949 46.9
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 5.7e-179 632.1 925 46.9
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 7.5e-179 631.7 950 44.3
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 1.1e-177 627.9 965 44.0
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 6.6e-175 618.6 941 45.9
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 1.5e-174 617.5 929 43.8
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 4.3e-174 615.9 934 44.9
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 1.6e-173 614.0 849 47.0
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 2.8e-173 613.2 930 44.4
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 4.0e-172 609.4 940 46.0
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 2.6e-171 606.7 929 45.1
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 5.8e-171 605.5 930 44.9
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 4.9e-170 602.4 1024 42.0
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 1.1e-169 601.3 936 45.2
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 4.1e-169 599.4 902 43.2
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.6e-168 597.4 843 49.6
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.3e-167 594.3 904 45.0
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 8.6e-167 591.7 943 44.1
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 9.5e-166 588.2 937 44.5
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 1.0e-159 568.2 859 43.5
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 2.0e-147 527.3 446 60.8
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 3.5e-136 490.0 393 64.4
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 1.9e-134 484.2 792 44.1
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.4e-129 468.0 938 36.4
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 7.6e-123 445.7 914 37.9
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 1.2e-120 438.3 967 34.6
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 6.3e-117 426.0 627 44.8
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.7e-109 401.4 508 46.9
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 5.9e-99 366.3 582 44.2
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 7.7e-91 339.3 529 38.8
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 1.1e-84 318.9 514 44.6
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.0e-79 302.4 613 41.4
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 7.0e-76 289.7 445 41.3
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 7.5e-70 269.6 260 56.2
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.6e-64 250.8 479 38.0
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.2e-56 225.7 192 61.5
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 5.8e-54 216.9 168 63.1
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.7e-53 215.3 254 49.2
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 4.9e-53 213.8 249 47.8
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 2.5e-49 201.4 916 27.2
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 1.2e-40 172.6 92 98.9
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 1.8e-39 168.7 92 96.7
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 4.4e-38 164.1 1143 24.7
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 2.2e-37 161.8 278 45.0
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 6.6e-34 150.2 249 45.0
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 1.1e-33 149.4 232 46.1
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 3.2e-28 131.3 99 62.6
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 2.1e-27 128.6 115 54.8
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.3e-26 125.9 396 31.6
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 8.7e-26 123.2 114 56.1
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 1.4e-23 115.9 111 54.1
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 7.6e-22 110.2 343 35.0
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 1.3e-21 109.4 552 25.0
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 6.0e-19 100.5 88 64.8
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.9e-19 100.1 86 66.3
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.1e-18 97.4 84 66.7
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.8e-16 91.7 143 42.0
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 6.2e-16 90.5 115 49.6
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 1.1e-15 89.7 682 23.5
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 1.1e-15 89.7 311 34.1
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.4e-15 89.4 134 41.0
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 5.8e-14 84.0 71 60.6
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 6.7e-10 70.5 55 67.3
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 6.7e-10 70.5 70 58.6
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 6.7e-10 70.5 238 32.4
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 7.4e-09 67.0 186 28.0
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 6.2e-08 63.9 58 51.7
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 9.0e-07 60.1 46 67.4
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.6e-06 58.5 91 44.0


User provided reference genes

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