Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15021 Brassica carinata HOM05D003602 ORTHO05D018547 0.0e+00 1474.1 752 100.0
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 2.2e-143 513.8 967 40.8
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 3.2e-139 500.0 970 39.8
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 4.2e-139 499.6 966 39.8
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 2.7e-138 496.9 966 39.6
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 1.4e-137 494.6 963 39.4
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 1.4e-137 494.6 963 39.4
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 3.0e-137 493.4 964 39.8
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 3.0e-137 493.4 964 39.5
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 2.0e-136 490.7 962 39.7
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 2.7e-130 470.3 971 38.0
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 3.6e-130 469.9 966 38.1
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 4.4e-128 463.0 965 37.9
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 7.5e-128 462.2 965 37.9
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 9.8e-128 461.8 967 37.3
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 3.7e-127 459.9 967 37.3
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 3.1e-126 456.8 967 37.1
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 5.4e-126 456.1 967 37.0
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 9.1e-126 455.3 965 36.6
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 2.0e-125 454.1 967 37.2
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 1.1e-123 448.4 967 36.9
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 1.5e-123 448.0 970 36.8
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 4.2e-123 446.4 967 36.8
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 4.2e-123 446.4 971 36.0
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 7.2e-123 445.7 961 36.3
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 9.5e-123 445.3 971 36.5
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 1.2e-122 444.9 966 36.3
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 1.6e-122 444.5 972 36.0
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 2.1e-122 444.1 970 36.5
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 2.8e-122 443.7 963 36.1
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 3.6e-122 443.4 966 36.1
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 4.7e-122 443.0 967 36.6
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 1.0e-121 441.8 971 35.8
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 1.0e-121 441.8 964 36.4
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 1.4e-121 441.4 962 35.4
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 4.0e-121 439.9 963 35.3
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 5.2e-121 439.5 967 36.4
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 8.9e-121 438.7 966 35.8
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 1.2e-120 438.3 967 36.7
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 1.5e-120 438.0 966 36.0
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 2.0e-120 437.6 967 35.8
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 2.6e-120 437.2 966 35.7
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 7.5e-120 435.6 964 36.5
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 9.8e-120 435.3 968 35.7
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 2.2e-119 434.1 970 36.6
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 8.3e-119 432.2 968 35.5
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 1.1e-118 431.8 977 35.8
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 1.8e-118 431.0 968 35.6
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 3.1e-118 430.3 968 35.5
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 3.1e-118 430.3 961 34.9
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 4.1e-118 429.9 971 35.9
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 2.0e-117 427.6 965 34.5
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 5.9e-117 426.0 967 35.5
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 5.9e-117 426.0 966 35.6
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 1.0e-116 425.2 958 36.3
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 2.9e-116 423.7 965 35.9
CARHR195690 Cardamine hirsuta HOM05D003602 ORTHO05D004808 5.0e-116 422.9 956 37.0
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 5.0e-116 422.9 964 35.4
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 1.1e-115 421.8 967 34.5
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 1.5e-115 421.4 958 36.1
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 3.3e-115 420.2 967 35.1
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 4.3e-115 419.9 959 35.6
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 5.6e-115 419.5 965 35.8
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 9.5e-115 418.7 966 36.4
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 1.2e-114 418.3 977 37.3
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 1.2e-114 418.3 966 34.8
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 2.1e-114 417.5 974 34.8
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 4.7e-114 416.4 970 34.9
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 4.7e-114 416.4 975 34.7
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 4.7e-114 416.4 975 34.7
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 6.1e-114 416.0 922 35.8
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 8.0e-114 415.6 965 35.4
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 1.0e-113 415.2 932 35.8
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 5.2e-113 412.9 963 34.8
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 6.8e-113 412.5 963 35.0
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 8.9e-113 412.1 963 35.0
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 8.9e-113 412.1 960 35.0
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.4e-112 410.2 963 34.8
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 5.8e-112 409.5 963 34.7
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 9.8e-112 408.7 963 34.6
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 9.8e-112 408.7 968 34.3
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.7e-111 406.8 963 34.7
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 3.7e-111 406.8 969 34.1
CSS0048042 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 1.4e-110 404.8 872 36.1
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 2.7e-109 400.6 968 34.4
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 7.8e-109 399.1 971 33.7
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 1.7e-108 397.9 971 33.7
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 2.3e-108 397.5 970 33.5
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 2.3e-108 397.5 971 33.8
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 8.6e-108 395.6 943 36.1
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 1.1e-107 395.2 972 33.7
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 1.9e-107 394.4 964 34.1
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 1.2e-106 391.7 981 33.4
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 2.8e-106 390.6 972 33.2
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 6.2e-106 389.4 972 33.2
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 8.0e-106 389.0 933 34.0
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 1.1e-105 388.7 983 33.5
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 5.2e-105 386.3 972 33.7
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 6.8e-105 386.0 960 33.8
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 2.0e-104 384.4 964 33.9
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 7.5e-104 382.5 1041 32.6
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 9.8e-104 382.1 965 33.9
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 1.3e-103 381.7 962 34.2
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 8.3e-103 379.0 964 33.6
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 1.9e-102 377.9 964 34.1
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 2.4e-102 377.5 969 33.3
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 2.1e-101 374.4 964 33.0
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 1.3e-100 371.7 966 32.6
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 2.3e-100 370.9 963 32.7
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 7.3e-99 365.9 966 32.3
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 9.5e-99 365.5 632 41.6
C02p25670 Brassica napus HOM05D003602 ORTHO05D018547 8.1e-98 362.5 183 97.3
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 1.1e-97 362.1 941 33.0
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 1.6e-93 348.2 965 31.5
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 5.1e-92 343.2 956 31.6
Thhalv10019782m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 8.1e-90 335.9 832 33.9
Migut.B01885 Erythranthe guttata HOM05D003602 ORTHO05D004808 1.1e-89 335.5 827 34.1
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 8.9e-89 332.4 928 33.3
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 4.4e-88 330.1 746 35.8
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 1.4e-86 325.1 827 34.0
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 2.4e-86 324.3 961 30.9
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 4.2e-86 323.6 937 30.8
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 5.1e-84 316.6 574 39.7
TAR375G0067 Trochodendron aralioides HOM05D003602 ORTHO05D004808 6.6e-84 316.2 795 34.2
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 8.7e-84 315.8 820 32.4
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 1.9e-83 314.7 970 31.0
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 1.3e-82 312.0 965 31.3
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 3.6e-82 310.5 822 33.9
Psat4g162200 Pisum sativum HOM05D003602 ORTHO05D004808 3.5e-77 293.9 573 37.9
BolC2t08632H Brassica oleracea HOM05D003602 ORTHO05D004808 2.4e-73 281.2 192 79.2
CDE10G0625 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 5.8e-72 276.6 868 29.1
BolC2t08633H Brassica oleracea HOM05D003602 ORTHO05D018547 1.2e-69 268.9 174 85.1
Medtr6g051660 Medicago truncatula HOM05D003602 ORTHO05D004808 9.6e-67 259.2 719 32.7
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 3.1e-65 254.2 846 29.4
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 3.8e-63 247.3 977 27.4
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 6.4e-63 246.5 542 36.5
AagrBONN_evm.TU.Sc2ySwM_228.4084 Anthoceros agrestis HOM05D003602 ORTHO05D004808 7.1e-62 243.0 720 31.8
BraA02t06614Z Brassica rapa HOM05D003602 ORTHO05D018547 1.6e-61 241.9 179 75.4
AUR62011778 Chenopodium quinoa HOM05D003602 ORTHO05D004808 1.0e-60 239.2 644 32.5
SMO358G0230 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 1.7e-55 221.9 928 27.6
CBR_g50023 Chara braunii HOM05D003602 ORTHO05D004808 3.2e-54 217.6 800 28.4
CDE10G0721 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 1.6e-53 215.3 521 33.6
BcaB03g13365 Brassica carinata HOM05D003602 ORTHO05D004808 7.9e-53 213.0 468 36.8
A02p15530 Brassica napus HOM05D003602 ORTHO05D018547 1.8e-49 201.8 179 67.6
AagrBONN_evm.TU.Sc2ySwM_368.664__665 Anthoceros agrestis HOM05D003602 ORTHO05D004808 1.2e-48 199.1 711 29.3
TPR.G33518 Trifolium pratense HOM05D003602 ORTHO05D004808 4.6e-45 187.2 749 29.8
PRCOL_00001712 Prasinoderma coloniale HOM05D003602 ORTHO05D004808 2.3e-44 184.9 944 25.2
FAN17G1261 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.1e-41 174.5 397 35.8
GSVIVG01027164001 Vitis vinifera HOM05D003602 ORTHO05D004808 1.2e-40 172.6 339 38.1
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 2.5e-38 164.9 411 34.3
Os01g0235400 Oryza sativa ssp. japonica HOM05D003602 ORTHO05D004808 3.2e-38 164.5 519 29.7
Cpa.g.sc18.79 Carica papaya HOM05D003602 ORTHO05D004808 1.4e-36 159.1 319 37.0
MCO04G210 Micromonas commoda HOM05D003602 ORTHO05D004808 1.4e-36 159.1 772 25.6
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 8.8e-36 156.4 221 44.3
BolC2t07236H Brassica oleracea HOM05D003602 ORTHO05D004808 2.0e-35 155.2 455 34.5
Lsat_1_v5_gn_2_68180 Lactuca sativa HOM05D003602 ORTHO05D004808 1.3e-34 152.5 236 42.4
QL04p077689 Quercus lobata HOM05D003602 ORTHO05D002925 2.2e-31 141.7 195 44.6
QL02p042411 Quercus lobata HOM05D002707 ORTHO05D002925 1.1e-30 139.4 203 42.9
Cre16.g685901 Chlamydomonas reinhardtii HOM05D003602 ORTHO05D004808 4.7e-29 134.0 521 25.5
QL10p039122 Quercus lobata HOM05D003602 ORTHO05D004808 1.8e-25 122.1 146 48.6
Lsat_1_v5_gn_2_118340 Lactuca sativa HOM05D003602 ORTHO05D004808 5.3e-25 120.6 246 36.6
BolC2t07237H Brassica oleracea HOM05D003602 ORTHO05D004808 5.9e-24 117.1 292 33.2
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 5.0e-23 114.0 114 53.5
ECA240G0654 Erigeron canadensis HOM05D003602 ORTHO05D004808 7.2e-22 110.2 491 28.9
Lj9C388G20 Lonicera japonica HOM05D003602 ORTHO05D004808 2.6e-19 101.7 184 38.6
Psat4g156360 Pisum sativum HOM05D003602 ORTHO05D004808 1.4e-17 95.9 147 42.9
CAN.G1045.28 Capsicum annuum HOM05D003602 ORTHO05D004808 7.0e-17 93.6 246 30.1
BcaB05g21496 Brassica carinata HOM05D003602 ORTHO05D018547 4.5e-16 90.9 172 41.3
Lj9A388T38 Lonicera japonica HOM05D003602 ORTHO05D004808 1.7e-15 89.0 243 31.3
AL350U10020 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 2.3e-12 78.6 465 24.1
Cfa023442 Carpinus fangiana HOM05D003602 ORTHO05D004808 2.4e-09 68.6 250 25.2
Prupe.2G190900 Prunus persica HOM05D003602 ORTHO05D004808 2.0e-08 65.5 87 48.3
COL.COLO4_28677 Corchorus olitorius HOM05D000591 ORTHO05D000579 7.7e-08 63.5 103 43.7
COL.COLO4_28675 Corchorus olitorius HOM05D000591 ORTHO05D011054 2.9e-07 61.6 122 37.7


User provided reference genes

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