Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-33 146.0 67 100.0
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.9e-27 125.2 67 85.1
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.9e-27 125.2 67 85.1
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 3.3e-27 124.4 67 82.1
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 3.3e-27 124.4 67 85.1
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 9.6e-27 122.9 67 85.1
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 4.8e-26 120.6 67 83.6
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 6.9e-25 116.7 67 76.1
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 6.9e-25 116.7 67 76.1
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 6.9e-25 116.7 67 76.1
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 6.9e-25 116.7 67 76.1
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 6.9e-25 116.7 67 79.1
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 9.0e-25 116.3 67 76.1
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-24 115.9 67 76.1
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.5e-24 115.5 67 77.6
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 2.0e-24 115.2 67 74.6
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.2e-23 111.7 67 76.1
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 2.2e-23 111.7 68 76.5
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 6.4e-23 110.2 67 73.1
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 4.2e-22 107.5 67 68.7
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 5.4e-22 107.1 67 71.6
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 3.5e-21 104.4 56 83.9
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 6.0e-21 103.6 64 70.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 6.0e-21 103.6 64 70.3
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 3.3e-19 97.8 52 80.8
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.8e-18 94.0 65 60.0
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 4.0e-17 90.9 49 71.4
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 6.9e-17 90.1 64 62.5
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.2e-15 85.1 65 53.8
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 8.4e-15 83.2 64 54.7
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.1e-14 82.8 64 50.0
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.1e-14 82.8 64 50.0
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 1.1e-14 82.8 64 50.0
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.4e-14 82.4 64 50.0
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 1.4e-14 82.4 64 53.1
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.9e-14 82.0 64 50.0
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 2.4e-14 81.6 64 53.1
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 3.2e-14 81.3 64 51.6
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 4.2e-14 80.9 64 48.4
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 4.2e-14 80.9 65 52.3
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 5.5e-14 80.5 64 48.4
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 5.5e-14 80.5 64 48.4
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 5.5e-14 80.5 60 56.7
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 5.5e-14 80.5 60 56.7
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 5.5e-14 80.5 64 48.4
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 9.3e-14 79.7 61 50.8
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 9.3e-14 79.7 64 50.0
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.2e-13 79.3 64 46.9
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.2e-13 79.3 60 55.0
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.6e-13 79.0 61 52.5
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.6e-13 79.0 64 46.9
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.6e-13 79.0 64 53.1
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 2.1e-13 78.6 59 57.6
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 2.7e-13 78.2 64 53.1
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.7e-13 78.2 64 51.6
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 2.7e-13 78.2 61 52.5
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 3.5e-13 77.8 56 57.1
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 3.5e-13 77.8 63 47.6
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 3.5e-13 77.8 65 47.7
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.5e-13 77.8 65 50.8
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 3.5e-13 77.8 64 46.9
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 4.6e-13 77.4 65 50.8
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 4.6e-13 77.4 64 51.6
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 6.0e-13 77.0 55 56.4
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 6.0e-13 77.0 60 51.7
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 6.0e-13 77.0 64 50.0
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 7.9e-13 76.6 64 48.4
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 7.9e-13 76.6 55 54.5
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 7.9e-13 76.6 64 48.4
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 7.9e-13 76.6 52 59.6
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.0e-12 76.3 56 53.6
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.0e-12 76.3 60 51.7
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.3e-12 75.9 64 45.3
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.3e-12 75.9 46 63.0
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.3e-12 75.9 64 46.9
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.3e-12 75.9 64 48.4
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.3e-12 75.9 64 46.9
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.3e-12 75.9 56 51.8
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.3e-12 75.9 64 50.0
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.8e-12 75.5 58 50.0
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 1.8e-12 75.5 64 45.3
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.8e-12 75.5 64 45.3
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.8e-12 75.5 63 49.2
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.8e-12 75.5 49 59.2
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 1.8e-12 75.5 64 48.4
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 2.3e-12 75.1 64 46.9
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 2.3e-12 75.1 51 62.7
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.3e-12 75.1 65 49.2
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 3.0e-12 74.7 53 54.7
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 3.0e-12 74.7 63 46.0
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 3.0e-12 74.7 63 46.0
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 3.0e-12 74.7 63 46.0
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 3.0e-12 74.7 65 50.8
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 3.0e-12 74.7 65 50.8
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 3.0e-12 74.7 56 53.6
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 3.9e-12 74.3 57 50.9
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.9e-12 74.3 44 63.6
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 3.9e-12 74.3 58 56.9
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.9e-12 74.3 53 62.3
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 3.9e-12 74.3 53 62.3
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 3.9e-12 74.3 64 43.8
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.1e-12 73.9 60 48.3
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 5.1e-12 73.9 61 50.8
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 5.1e-12 73.9 61 47.5
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 5.1e-12 73.9 64 46.9
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 5.1e-12 73.9 64 46.9
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 8.7e-12 73.2 55 50.9
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.1e-11 72.8 56 50.0
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.1e-11 72.8 64 42.2
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.1e-11 72.8 64 42.2
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 1.9e-11 72.0 64 46.9
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 2.5e-11 71.6 55 50.9
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 2.5e-11 71.6 64 43.8
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 3.3e-11 71.2 64 43.8
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.3e-11 70.9 56 46.4
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 5.6e-11 70.5 56 48.2
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 9.6e-11 69.7 59 45.8
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 9.6e-11 69.7 64 42.2
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 1.3e-10 69.3 58 50.0
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.3e-10 69.3 56 44.6
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 1.3e-10 69.3 51 51.0
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 1.3e-10 69.3 56 48.2
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.1e-09 64.7 39 64.1
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 3.1e-09 64.7 55 45.5
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.2e-08 62.8 62 40.3
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.5e-08 62.4 51 47.1
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.8e-07 57.8 65 40.0


User provided reference genes

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