Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14949 Brassica carinata HOM05D000081 ORTHO05D021434 6.8e-44 180.3 90 100.0
C02p24630 Brassica napus HOM05D000081 ORTHO05D021434 3.2e-41 171.4 87 97.7
BcaC05g26588 Brassica carinata HOM05D002336 ORTHO05D002526 1.7e-23 112.5 62 82.3
BcaC05g26591 Brassica carinata HOM05D002336 ORTHO05D002526 1.7e-23 112.5 62 82.3
BcaNung06947 Brassica carinata HOM05D000081 ORTHO05D021434 1.9e-22 109.0 62 82.3
BolC5t31356H Brassica oleracea HOM05D000081 ORTHO05D021434 2.5e-22 108.6 61 83.6
BraA02t07774Z Brassica rapa HOM05D000081 ORTHO05D021434 1.4e-20 102.8 61 80.3
BcaC09g52249 Brassica carinata HOM05D000081 ORTHO05D000036 7.6e-19 97.1 60 80.0
Thhalv10024810m.g Eutrema salsugineum HOM05D000081 ORTHO05D000036 2.9e-18 95.1 60 78.3
AL7G26250 Arabidopsis lyrata HOM05D000081 ORTHO05D000036 8.4e-18 93.6 52 86.5
BcaC09g50632 Brassica carinata HOM05D000081 ORTHO05D000036 1.9e-17 92.4 61 77.0
A01p17900 Brassica napus HOM05D000081 ORTHO05D000036 1.9e-17 92.4 61 77.0
C01p22690 Brassica napus HOM05D000081 ORTHO05D000036 1.9e-17 92.4 61 77.0
BolC1t02199H Brassica oleracea HOM05D000081 ORTHO05D000036 1.9e-17 92.4 61 77.0
BraA01t01744Z Brassica rapa HOM05D000081 ORTHO05D000036 1.9e-17 92.4 61 77.0
BcaB03g12502 Brassica carinata HOM05D000081 ORTHO05D000036 2.7e-16 88.6 61 75.4
C07p55250 Brassica napus HOM05D000081 ORTHO05D000036 4.6e-16 87.8 61 73.8
BolC7t45989H Brassica oleracea HOM05D000081 ORTHO05D000036 4.6e-16 87.8 61 73.8
Carub.0007s1423 Capsella rubella HOM05D000081 ORTHO05D000036 1.0e-15 86.7 53 79.2
Sp7g24610 Schrenkiella parvula HOM05D000081 ORTHO05D000036 1.0e-15 86.7 53 79.2
A03p56810 Brassica napus HOM05D000081 ORTHO05D000036 5.1e-15 84.3 61 72.1
BraA03t14751Z Brassica rapa HOM05D000081 ORTHO05D000036 5.1e-15 84.3 61 72.1
AT4G26640 Arabidopsis thaliana HOM05D000081 ORTHO05D000036 1.1e-14 83.2 53 75.5
A08p20760 Brassica napus HOM05D000081 ORTHO05D000036 1.9e-14 82.4 63 71.4
BcaC07g38240 Brassica carinata HOM05D000081 ORTHO05D000036 5.6e-14 80.9 63 69.8
C08p09900 Brassica napus HOM05D000081 ORTHO05D000036 5.6e-14 80.9 63 69.8
BolC8t48667H Brassica oleracea HOM05D000081 ORTHO05D000036 5.6e-14 80.9 63 69.8
BraA08t34030Z Brassica rapa HOM05D000081 ORTHO05D000036 5.6e-14 80.9 63 69.8
CARHR234230 Cardamine hirsuta HOM05D000081 ORTHO05D000036 6.2e-13 77.4 49 75.5
THA.LOC104813446 Tarenaya hassleriana HOM05D000081 ORTHO05D000036 1.5e-11 72.8 63 61.9
Phvul.006G053300 Phaseolus vulgaris HOM05D000081 ORTHO05D000036 3.4e-11 71.6 83 47.0
Aa31LG3G11510 Aethionema arabicum HOM05D000081 ORTHO05D000036 4.4e-11 71.2 66 57.6
Sp6g17480 Schrenkiella parvula HOM05D000081 ORTHO05D000036 5.8e-11 70.9 64 60.9
MD03G1188900 Malus domestica HOM05D000081 ORTHO05D000036 7.6e-11 70.5 67 56.7
BcaB01g04359 Brassica carinata HOM05D000081 ORTHO05D000036 1.3e-10 69.7 61 57.4
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.3e-10 69.7 61 57.4
VMungo0540G0142 Vigna mungo HOM05D000081 ORTHO05D000036 1.3e-10 69.7 69 53.6
arahy.Tifrunner.gnm1.ann1.62XZQ4 Arachis hypogaea HOM05D000081 ORTHO05D000036 2.2e-10 68.9 68 55.9
arahy.Tifrunner.gnm1.ann1.M3PRRA Arachis hypogaea HOM05D000081 ORTHO05D000036 2.2e-10 68.9 68 55.9
MELO3C014134.2 Cucumis melo HOM05D000081 ORTHO05D000036 2.9e-10 68.6 65 58.5
CsaV3_3G004410 Cucumis sativus L. HOM05D000081 ORTHO05D000036 2.9e-10 68.6 65 58.5
Potri.001G361600 Populus trichocarpa HOM05D000081 ORTHO05D000036 4.9e-10 67.8 68 58.8
Glyma.08G325800 Glycine max HOM05D000081 ORTHO05D000036 6.4e-10 67.4 67 53.7
Glyma.18G081200 Glycine max HOM05D000081 ORTHO05D000036 6.4e-10 67.4 67 53.7
Sed0009767 Sechium edule HOM05D000081 ORTHO05D000036 6.4e-10 67.4 66 59.1
Cpa.g.sc12.196 Carica papaya HOM05D000081 ORTHO05D000036 8.4e-10 67.0 67 56.7
Haze_09784 Corylus avellana HOM05D000081 ORTHO05D000036 8.4e-10 67.0 67 55.2
CANSAT11G1750 Cannabis sativa HOM05D000081 ORTHO05D000036 1.1e-09 66.6 67 55.2
Lalb_Chr15g0081951 Lupinus albus HOM05D000081 ORTHO05D000036 1.1e-09 66.6 67 53.7
Manes.03G137600 Manihot esculenta HOM05D000081 ORTHO05D000036 1.1e-09 66.6 67 56.7
Manes.03G137804 Manihot esculenta HOM05D000081 ORTHO05D000036 1.1e-09 66.6 67 56.7
Prupe.4G232600 Prunus persica HOM05D000081 ORTHO05D000036 1.4e-09 66.2 67 53.7
FvH4_3g24010 Fragaria vesca HOM05D000081 ORTHO05D000036 1.9e-09 65.9 67 53.7
FAN11G3949 Fragaria x ananassa HOM05D000081 ORTHO05D000036 1.9e-09 65.9 67 53.7
Potri.011G087900 Populus trichocarpa HOM05D000081 ORTHO05D000036 1.9e-09 65.9 67 53.7
RcHm_v2.0_Chr5g0042581 Rosa chinensis HOM05D000081 ORTHO05D000036 1.9e-09 65.9 67 53.7
MD11G1205000 Malus domestica HOM05D000081 ORTHO05D000036 2.4e-09 65.5 65 55.4
Manes.15G063600 Manihot esculenta HOM05D000081 ORTHO05D000036 2.4e-09 65.5 74 51.4
THA.LOC104817700 Tarenaya hassleriana HOM05D000081 ORTHO05D000036 2.4e-09 65.5 69 50.7
Psat5g171000 Pisum sativum HOM05D000081 ORTHO05D000036 3.2e-09 65.1 68 54.4
SGA_v2.0_scaffold168G38529 Striga asiatica HOM05D000081 ORTHO05D000036 3.2e-09 65.1 65 55.4
Duzib213G1013 Durio zibethinus HOM05D000081 ORTHO05D000036 4.2e-09 64.7 68 58.8
FAN16G3136 Fragaria x ananassa HOM05D000081 ORTHO05D000036 4.2e-09 64.7 67 52.2
FAN21G3648 Fragaria x ananassa HOM05D000081 ORTHO05D000036 4.2e-09 64.7 67 52.2
FAN25G1891 Fragaria x ananassa HOM05D000081 ORTHO05D000036 4.2e-09 64.7 67 52.2
Sabra11G0074000 Salix brachista HOM05D000081 ORTHO05D000036 4.2e-09 64.7 67 52.2
Sabra11G0079700 Salix brachista HOM05D000081 ORTHO05D000036 4.2e-09 64.7 67 52.2
vmacro09671 Vaccinium macrocarpon HOM05D000081 ORTHO05D000036 4.2e-09 64.7 67 52.2
VMungo0647G2175 Vigna mungo HOM05D000081 ORTHO05D000036 4.2e-09 64.7 66 56.1
Gohir.A13G134600 Gossypium hirsutum HOM05D000081 ORTHO05D000036 5.4e-09 64.3 67 55.2
Gohir.D13G139000 Gossypium hirsutum HOM05D000081 ORTHO05D000036 5.4e-09 64.3 67 55.2
Gorai.013G155500 Gossypium raimondii HOM05D000081 ORTHO05D000036 5.4e-09 64.3 67 55.2
Rhsim04G0015000 Rhododendron simsii HOM05D000081 ORTHO05D000036 5.4e-09 64.3 67 52.2
Actinidia00095 Actinidia chinensis HOM05D000081 ORTHO05D000036 7.1e-09 63.9 67 53.7
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 7.1e-09 63.9 67 52.2
Cc05_g14660 Coffea canephora HOM05D000081 ORTHO05D000036 7.1e-09 63.9 72 51.4
FAN25G2443 Fragaria x ananassa HOM05D000081 ORTHO05D000036 7.1e-09 63.9 65 53.8
Thecc.07G022800 Theobroma cacao HOM05D000081 ORTHO05D000036 7.1e-09 63.9 67 53.7
Dinv10309 Davidia involucrata HOM05D000081 ORTHO05D000036 9.3e-09 63.5 67 52.2
Gohir.A01G087000 Gossypium hirsutum HOM05D000081 ORTHO05D000036 9.3e-09 63.5 67 53.7
Medtr3g056100 Medicago truncatula HOM05D000081 ORTHO05D000036 9.3e-09 63.5 68 52.9
Medtr5g094430 Medicago truncatula HOM05D000081 ORTHO05D000036 9.3e-09 63.5 68 54.4
Phvul.008G275300 Phaseolus vulgaris HOM05D000081 ORTHO05D000036 9.3e-09 63.5 66 54.5
GSVIVG01037775001 Vitis vinifera HOM05D000081 ORTHO05D000036 9.3e-09 63.5 67 50.7
BcaC01g06382 Brassica carinata HOM05D000081 ORTHO05D000036 1.2e-08 63.2 64 51.6
C03p16390 Brassica napus HOM05D000081 ORTHO05D000036 1.2e-08 63.2 64 51.6
BolC3t14061H Brassica oleracea HOM05D000081 ORTHO05D000036 1.2e-08 63.2 64 51.6
Lj6g0018412 Lotus japonicus HOM05D000081 ORTHO05D000036 1.2e-08 63.2 67 53.7
Actinidia05034 Actinidia chinensis HOM05D000081 ORTHO05D000036 1.6e-08 62.8 67 52.2
CiPaw.12G135700 Carya illinoinensis HOM05D000081 ORTHO05D000036 1.6e-08 62.8 69 53.6
Ca_06370_v3 Cicer arietinum L. HOM05D000081 ORTHO05D000036 1.6e-08 62.8 68 54.4
Ca_20154_v3 Cicer arietinum L. HOM05D000081 ORTHO05D000036 1.6e-08 62.8 69 52.2
Dinv40833 Davidia involucrata HOM05D000081 ORTHO05D000036 1.6e-08 62.8 67 53.7
Thhalv10013115m.g Eutrema salsugineum HOM05D000081 ORTHO05D000036 1.6e-08 62.8 66 54.5
Gohir.D01G073200 Gossypium hirsutum HOM05D000081 ORTHO05D000036 1.6e-08 62.8 68 54.4
Gorai.002G096200 Gossypium raimondii HOM05D000081 ORTHO05D000036 1.6e-08 62.8 68 54.4
Lalb_Chr10g0107301 Lupinus albus HOM05D000081 ORTHO05D000036 1.6e-08 62.8 69 52.2
Glyma.02G297400 Glycine max HOM05D000081 ORTHO05D000036 2.1e-08 62.4 69 52.2
Lalb_Chr04g0248001 Lupinus albus HOM05D000081 ORTHO05D000036 2.1e-08 62.4 65 53.8
QL08p005532 Quercus lobata HOM05D000081 ORTHO05D000036 2.1e-08 62.4 67 50.7
TPR.G1939 Trifolium pratense HOM05D000081 ORTHO05D000036 2.1e-08 62.4 68 51.5
ClCG10G004600 Citrullus lanatus HOM05D000081 ORTHO05D000036 2.7e-08 62.0 60 56.7
Glyma.14G016200 Glycine max HOM05D000081 ORTHO05D000036 2.7e-08 62.0 69 52.2
Hma1.2p1_1199F.1_g266480 Hydrangea macrophylla HOM05D000081 ORTHO05D000036 2.7e-08 62.0 67 53.7
Rhsim06G0226600 Rhododendron simsii HOM05D000081 ORTHO05D000036 2.7e-08 62.0 59 57.6
COL.COLO4_09782 Corchorus olitorius HOM05D000081 ORTHO05D000036 3.5e-08 61.6 67 50.7
GSVIVG01007006001 Vitis vinifera HOM05D000081 ORTHO05D000036 3.5e-08 61.6 72 51.4
Atru.chr2.3616 Acer truncatum HOM05D000081 ORTHO05D000036 4.6e-08 61.2 67 52.2
Ah.06g181110 Amaranthus hybridus HOM05D000081 ORTHO05D000036 4.6e-08 61.2 72 50.0
CSS0007384 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 4.6e-08 61.2 66 51.5
Eucgr.F03522 Eucalyptus grandis HOM05D000081 ORTHO05D000036 4.6e-08 61.2 67 52.2
Psat2g009320 Pisum sativum HOM05D000081 ORTHO05D000036 4.6e-08 61.2 68 51.5
CiPaw.11G200800 Carya illinoinensis HOM05D000081 ORTHO05D000036 6.0e-08 60.8 67 50.7
Duzib170G0410 Durio zibethinus HOM05D000081 ORTHO05D000036 6.0e-08 60.8 66 53.0
Oeu005970.1 Olea europaea HOM05D000081 ORTHO05D000036 6.0e-08 60.8 74 48.6
Aqoxy4G02209 Aquilegia oxysepala HOM05D000081 ORTHO05D000036 7.8e-08 60.5 71 49.3
Dinv19886 Davidia involucrata HOM05D000081 ORTHO05D000036 1.0e-07 60.1 69 50.7
Lj1C884G14 Lonicera japonica HOM05D000081 ORTHO05D000036 1.0e-07 60.1 71 52.1
TPR.G31711 Trifolium pratense HOM05D000081 ORTHO05D000036 1.0e-07 60.1 64 53.1
TWI38G1623 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 1.0e-07 60.1 68 51.5
Eucgr.F00621 Eucalyptus grandis HOM05D000081 ORTHO05D000036 1.3e-07 59.7 83 47.0
PSO541G0652 Papaver somniferum HOM05D000081 ORTHO05D000036 1.3e-07 59.7 71 45.1
PSO675G6674 Papaver somniferum HOM05D000081 ORTHO05D000036 1.3e-07 59.7 71 45.1
vmacro11562 Vaccinium macrocarpon HOM05D000081 ORTHO05D000036 1.3e-07 59.7 81 43.2
Peaxi162Scf00955g00032 Petunia axillaris HOM05D000081 ORTHO05D000036 1.7e-07 59.3 66 48.5
SGA_v2.0_scaffold171G38889 Striga asiatica HOM05D000081 ORTHO05D000036 1.7e-07 59.3 62 54.8
Ciclev10007882m.g Citrus clementina HOM05D000081 ORTHO05D000036 3.0e-07 58.5 68 54.4
LjContig00272g0017382 Lotus japonicus HOM05D000081 ORTHO05D000036 3.0e-07 58.5 79 46.8
HanXRQChr13g0408021 Helianthus annuus HOM05D000081 ORTHO05D000036 3.9e-07 58.2 68 50.0
PGR031G3564 Punica granatum HOM05D000081 ORTHO05D000036 3.9e-07 58.2 84 47.6
TWI39G0106 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 3.9e-07 58.2 67 49.3
Gohir.A08G024700 Gossypium hirsutum HOM05D000081 ORTHO05D000036 5.1e-07 57.8 66 53.0
Gohir.D08G035200 Gossypium hirsutum HOM05D000081 ORTHO05D000036 5.1e-07 57.8 67 47.8
Gorai.004G033200 Gossypium raimondii HOM05D000081 ORTHO05D000036 5.1e-07 57.8 67 47.8
Nitab4.5_0008886g0030 Nicotiana tabacum HOM05D000081 ORTHO05D000036 5.1e-07 57.8 66 48.5
Ah.04g166420 Amaranthus hybridus HOM05D000081 ORTHO05D000036 6.6e-07 57.4 72 47.2
HanXRQChr03g0077021 Helianthus annuus HOM05D000081 ORTHO05D000036 6.6e-07 57.4 68 48.5
CAN.G489.4 Capsicum annuum HOM05D000081 ORTHO05D000036 8.7e-07 57.0 66 48.5
Nitab4.5_0000163g0350 Nicotiana tabacum HOM05D000081 ORTHO05D000036 8.7e-07 57.0 66 48.5
Peaxi162Scf00285g00820 Petunia axillaris HOM05D000081 ORTHO05D000036 1.5e-06 56.2 65 46.2
PGSC0003DMG400029815 Solanum tuberosum HOM05D000081 ORTHO05D000036 1.5e-06 56.2 67 47.8
CAN.G337.30 Capsicum annuum HOM05D000081 ORTHO05D000036 1.9e-06 55.8 66 47.0
Nn1g03251 Nelumbo nucifera HOM05D000081 ORTHO05D000036 1.9e-06 55.8 72 45.8
Nitab4.5_0003612g0070 Nicotiana tabacum HOM05D000081 ORTHO05D000036 1.9e-06 55.8 67 49.3
Sopen07g033470 Solanum pennellii HOM05D000081 ORTHO05D000036 1.9e-06 55.8 66 48.5
PGSC0003DMG400022290 Solanum tuberosum HOM05D000081 ORTHO05D000036 1.9e-06 55.8 66 48.5
AUR62017056 Chenopodium quinoa HOM05D000081 ORTHO05D000036 2.5e-06 55.5 72 43.1
Hma1.2p1_0036F.1_g022760 Hydrangea macrophylla HOM05D000081 ORTHO05D000036 3.3e-06 55.1 67 50.7
Sc03g0008010 Simmondsia chinensis HOM05D000081 ORTHO05D000036 3.3e-06 55.1 66 47.0
Solyc12g014610.2 Solanum lycopersicum HOM05D000081 ORTHO05D000036 3.3e-06 55.1 67 46.3
Sopen12g007500 Solanum pennellii HOM05D000081 ORTHO05D000036 3.3e-06 55.1 67 46.3
TAR626G0547 Trochodendron aralioides HOM05D000081 ORTHO05D000036 3.3e-06 55.1 72 48.6
HPP92_006090 Vanilla planifolia HOM05D000081 ORTHO05D000036 3.3e-06 55.1 94 37.2
ECA240G2469 Erigeron canadensis HOM05D000081 ORTHO05D000036 4.3e-06 54.7 58 51.7
PGR083G1915 Punica granatum HOM05D000081 ORTHO05D000036 4.3e-06 54.7 67 49.3
AUR62040662 Chenopodium quinoa HOM05D000081 ORTHO05D000036 5.6e-06 54.3 72 43.1
Nitab4.5_0000461g0070 Nicotiana tabacum HOM05D000081 ORTHO05D000036 5.6e-06 54.3 66 48.5
EL10Ac4g07618 Beta vulgaris HOM05D000081 ORTHO05D000036 7.3e-06 53.9 72 43.1
Oeu019609.1 Olea europaea HOM05D000081 ORTHO05D000036 7.3e-06 53.9 67 46.3
Solyc07g065260.4 Solanum lycopersicum HOM05D000081 ORTHO05D000036 9.6e-06 53.5 65 47.7


User provided reference genes

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