Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14948 Brassica carinata HOM05D001186 ORTHO05D000971 1.0e-70 270.0 138 100.0
C02p24610 Brassica napus HOM05D001186 ORTHO05D000971 3.2e-69 265.0 138 98.6
A02p15000 Brassica napus HOM05D001186 ORTHO05D000971 2.5e-66 255.4 138 94.9
BcaB05g24382 Brassica carinata HOM05D001186 ORTHO05D000971 3.1e-64 248.4 137 91.2
BraA02t06567Z Brassica rapa HOM05D001186 ORTHO05D000971 2.6e-63 245.4 138 93.5
Sp5g23520 Schrenkiella parvula HOM05D001186 ORTHO05D000971 2.5e-53 212.2 137 80.3
Thhalv10019299m.g Eutrema salsugineum HOM05D001186 ORTHO05D000971 2.6e-50 202.2 137 78.1
CARHR061230 Cardamine hirsuta HOM05D001186 ORTHO05D000971 6.1e-44 181.0 141 70.2
Carub.0002s1496 Capsella rubella HOM05D001186 ORTHO05D000971 4.0e-43 178.3 137 70.8
AL2G27310 Arabidopsis lyrata HOM05D001186 ORTHO05D000971 1.5e-42 176.4 141 68.8
BolC2t08559H Brassica oleracea HOM05D001186 ORTHO05D000971 8.3e-41 170.6 86 98.8
AT1G68450 Arabidopsis thaliana HOM05D001186 ORTHO05D000971 1.3e-38 163.3 138 66.7
THA.LOC104821926 Tarenaya hassleriana HOM05D001186 ORTHO05D000971 3.5e-23 112.1 142 51.4
COL.COLO4_07638 Corchorus olitorius HOM05D001186 ORTHO05D000971 6.6e-14 81.3 164 35.4
TAR371G0320 Trochodendron aralioides HOM05D001186 ORTHO05D000971 5.6e-13 78.2 153 38.6
CiPaw.15G086400 Carya illinoinensis HOM05D001186 ORTHO05D000971 9.5e-13 77.4 171 32.7
TAR629G3519 Trochodendron aralioides HOM05D001186 ORTHO05D000971 2.1e-12 76.3 165 35.2
Rhsim09G0107000 Rhododendron simsii HOM05D001186 ORTHO05D000971 2.8e-12 75.9 133 38.3
Nitab4.5_0000489g0090 Nicotiana tabacum HOM05D001186 ORTHO05D000971 6.2e-12 74.7 152 34.2
TWI31G0680 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 6.2e-12 74.7 139 37.4
CSS0012233 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 1.1e-11 73.9 168 33.3
Hma1.2p1_0061F.1_g033760 Hydrangea macrophylla HOM05D001186 ORTHO05D000971 1.8e-11 73.2 142 36.6
Dinv31630 Davidia involucrata HOM05D001186 ORTHO05D000971 2.3e-11 72.8 133 40.6
Sed0028138 Sechium edule HOM05D001186 ORTHO05D000971 3.1e-11 72.4 136 37.5
PGR119G2222 Punica granatum HOM05D001186 ORTHO05D000971 5.2e-11 71.6 193 31.1
Dinv21073 Davidia involucrata HOM05D001186 ORTHO05D000971 2.0e-10 69.7 134 37.3
TWI79G1623 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 2.6e-10 69.3 129 36.4
QL01p041163 Quercus lobata HOM05D001186 ORTHO05D000971 3.4e-10 68.9 162 35.2
Atru.chr11.114 Acer truncatum HOM05D001186 ORTHO05D000971 7.5e-10 67.8 140 37.1
ATR1125G102 Amborella trichopoda HOM05D001186 ORTHO05D000971 7.5e-10 67.8 159 32.1
Phvul.007G028200 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 9.8e-10 67.4 149 32.2
Manes.06G067000 Manihot esculenta HOM05D001186 ORTHO05D000971 1.3e-09 67.0 137 37.2
CiPaw.15G086500 Carya illinoinensis HOM05D001186 ORTHO05D000971 2.2e-09 66.2 176 29.5
Cc11_g10020 Coffea canephora HOM05D001186 ORTHO05D000971 3.7e-09 65.5 156 32.1
Gohir.D05G323700 Gossypium hirsutum HOM05D001186 ORTHO05D000971 3.7e-09 65.5 150 32.0
Gorai.009G347500 Gossypium raimondii HOM05D001186 ORTHO05D000971 3.7e-09 65.5 150 32.0
Lalb_Chr21g0308871 Lupinus albus HOM05D001186 ORTHO05D000971 4.9e-09 65.1 148 33.1
Manes.14G103400 Manihot esculenta HOM05D001186 ORTHO05D000971 4.9e-09 65.1 168 31.5
MBI09_g40766_MAGBIO Magnolia biondii HOM05D001186 ORTHO05D000971 6.4e-09 64.7 164 33.5
DCAR_026737 Daucus carota HOM05D001186 ORTHO05D000971 8.3e-09 64.3 138 34.8
Duzib268G0437 Durio zibethinus HOM05D001186 ORTHO05D000971 1.1e-08 63.9 175 31.4
Thecc.02G227800 Theobroma cacao HOM05D001186 ORTHO05D000971 1.1e-08 63.9 180 30.6
Gohir.A05G321500 Gossypium hirsutum HOM05D001186 ORTHO05D000971 1.4e-08 63.5 149 33.6
SGA_v2.0_scaffold38G14938 Striga asiatica HOM05D001186 ORTHO05D000971 1.4e-08 63.5 141 32.6
Potri.010G123700 Populus trichocarpa HOM05D001186 ORTHO05D000971 1.9e-08 63.2 183 28.4
Eucgr.G02312 Eucalyptus grandis HOM05D001186 ORTHO05D000971 2.4e-08 62.8 120 35.0
Aqoxy6G00387 Aquilegia oxysepala HOM05D001186 ORTHO05D000971 3.2e-08 62.4 93 40.9
Glyma.10G273300 Glycine max HOM05D001186 ORTHO05D000971 4.1e-08 62.0 146 32.2
ECA233G1982 Erigeron canadensis HOM05D001186 ORTHO05D000971 5.4e-08 61.6 152 34.2
Glyma.08G041900 Glycine max HOM05D001186 ORTHO05D000971 5.4e-08 61.6 74 47.3
Sed0016046 Sechium edule HOM05D001186 ORTHO05D000971 5.4e-08 61.6 140 35.7
Aqoxy3G00278 Aquilegia oxysepala HOM05D001186 ORTHO05D000971 7.1e-08 61.2 179 29.6
Lsat_1_v5_gn_8_40921 Lactuca sativa HOM05D001186 ORTHO05D000971 7.1e-08 61.2 137 35.0
Lalb_Chr06g0166031 Lupinus albus HOM05D001186 ORTHO05D000971 7.1e-08 61.2 80 41.2
SalBow8G5321 Salvia bowleyana HOM05D001186 ORTHO05D000971 7.1e-08 61.2 142 33.1
TPR.G18807 Trifolium pratense HOM05D001186 ORTHO05D000971 7.1e-08 61.2 131 30.5
CDE06G0770 Ceratophyllum demersum HOM05D001186 ORTHO05D000971 9.2e-08 60.8 106 34.0
FvH4_4g27220 Fragaria vesca HOM05D001186 ORTHO05D000971 9.2e-08 60.8 100 41.0
TWI79G1231 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 9.2e-08 60.8 126 34.1
THA.LOC104806066 Tarenaya hassleriana HOM05D001186 ORTHO05D000971 1.2e-07 60.5 89 42.7
FAN17G0570 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.6e-07 60.1 100 40.0
Duzib093G1110 Durio zibethinus HOM05D001186 ORTHO05D000971 2.1e-07 59.7 104 39.4
Duzib128G1674 Durio zibethinus HOM05D001186 ORTHO05D000971 2.1e-07 59.7 121 34.7
Gohir.A08G093800 Gossypium hirsutum HOM05D001186 ORTHO05D000971 2.1e-07 59.7 155 35.5
Gohir.D08G105100 Gossypium hirsutum HOM05D001186 ORTHO05D000971 2.1e-07 59.7 155 35.5
Gorai.004G112000 Gossypium raimondii HOM05D001186 ORTHO05D000971 2.1e-07 59.7 155 35.5
Cpa.g.c39771 Carica papaya HOM05D001186 ORTHO05D000971 2.7e-07 59.3 117 35.9
Cpa.g.sc1.29 Carica papaya HOM05D001186 ORTHO05D000971 2.7e-07 59.3 69 53.6
Ciclev10023791m.g Citrus clementina HOM05D001186 ORTHO05D000971 2.7e-07 59.3 60 48.3
FAN12G0246 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.7e-07 59.3 100 40.0
FAN12G0708 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.7e-07 59.3 100 40.0
Pp3c6_4170 Physcomitrium patens HOM05D001186 ORTHO05D000971 2.7e-07 59.3 82 40.2
CsaV3_5G034400 Cucumis sativus L. HOM05D001186 ORTHO05D000971 3.5e-07 58.9 111 35.1
Medtr1g110570 Medicago truncatula HOM05D001186 ORTHO05D000971 3.5e-07 58.9 119 33.6
HPP92_027454 Vanilla planifolia HOM05D001186 ORTHO05D000971 3.5e-07 58.9 73 49.3
CAN.G1425.6 Capsicum annuum HOM05D001186 ORTHO05D000971 4.6e-07 58.5 112 36.6
HPP92_000062 Vanilla planifolia HOM05D001186 ORTHO05D000971 4.6e-07 58.5 71 47.9
FAN07G0491 Fragaria x ananassa HOM05D001186 ORTHO05D000971 6.0e-07 58.2 100 39.0
Lalb_Chr16g0387891 Lupinus albus HOM05D001186 ORTHO05D000971 6.0e-07 58.2 68 45.6
Nn4g23866 Nelumbo nucifera HOM05D001186 ORTHO05D000971 6.0e-07 58.2 171 26.3
Potri.015G046600 Populus trichocarpa HOM05D001186 ORTHO05D000971 6.0e-07 58.2 147 31.3
CANSAT01G1945 Cannabis sativa HOM05D001186 ORTHO05D000971 7.8e-07 57.8 69 46.4
Haze_25129 Corylus avellana HOM05D001186 ORTHO05D000971 7.8e-07 57.8 117 34.2
Duzib205G0230 Durio zibethinus HOM05D001186 ORTHO05D000971 7.8e-07 57.8 80 43.8
Psat6g226600 Pisum sativum HOM05D001186 ORTHO05D000971 7.8e-07 57.8 111 35.1
QL01p041179 Quercus lobata HOM05D001186 ORTHO05D000971 7.8e-07 57.8 77 44.2
MSTRG.847 Avicennia marina HOM05D001186 ORTHO05D000971 1.0e-06 57.4 131 31.3
CSS0032299 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 1.0e-06 57.4 152 30.3
CAN.G1425.4 Capsicum annuum HOM05D001186 ORTHO05D000971 1.0e-06 57.4 95 40.0
Ciclev10013749m.g Citrus clementina HOM05D001186 ORTHO05D000971 1.0e-06 57.4 130 31.5
COL.COLO4_29493 Corchorus olitorius HOM05D001186 ORTHO05D000971 1.0e-06 57.4 101 37.6
Migut.L01057 Erythranthe guttata HOM05D001186 ORTHO05D000971 1.0e-06 57.4 144 34.0
Gohir.A01G199550 Gossypium hirsutum HOM05D001186 ORTHO05D000971 1.0e-06 57.4 100 39.0
Lalb_Chr05g0222471 Lupinus albus HOM05D001186 ORTHO05D000971 1.0e-06 57.4 78 42.3
Os02g0539500 Oryza sativa ssp. japonica HOM05D001186 ORTHO05D000971 1.0e-06 57.4 83 44.6
ClCG10G017960 Citrullus lanatus HOM05D001186 ORTHO05D000971 1.3e-06 57.0 89 40.4
Potri.005G189300 Populus trichocarpa HOM05D001186 ORTHO05D000971 1.3e-06 57.0 71 46.5
PGSC0003DMG400005637 Solanum tuberosum HOM05D001186 ORTHO05D000971 1.3e-06 57.0 67 47.8
TAR381G0526 Trochodendron aralioides HOM05D001186 ORTHO05D000971 1.3e-06 57.0 77 45.5
unitig_22.g6558 Utricularia gibba HOM05D001186 ORTHO05D000971 1.3e-06 57.0 97 35.1
VMungo1215G0327 Vigna mungo HOM05D001186 ORTHO05D000971 1.3e-06 57.0 132 31.1
arahy.Tifrunner.gnm1.ann1.MZ5XB8 Arachis hypogaea HOM05D001186 ORTHO05D000971 1.7e-06 56.6 84 42.9
BcaC09g48794 Brassica carinata HOM05D001186 ORTHO05D000971 1.7e-06 56.6 63 50.8
A01p35980 Brassica napus HOM05D001186 ORTHO05D000971 1.7e-06 56.6 63 50.8
C01p45850 Brassica napus HOM05D001186 ORTHO05D000971 1.7e-06 56.6 63 50.8
BolC1t04547H Brassica oleracea HOM05D001186 ORTHO05D000971 1.7e-06 56.6 63 50.8
BraA01t03679Z Brassica rapa HOM05D001186 ORTHO05D000971 1.7e-06 56.6 63 50.8
DCAR_023208 Daucus carota HOM05D001186 ORTHO05D000971 1.7e-06 56.6 73 43.8
Glyma.07G092500 Glycine max HOM05D001186 ORTHO05D000971 1.7e-06 56.6 130 33.1
Lj2g0004597 Lotus japonicus HOM05D001186 ORTHO05D000971 1.7e-06 56.6 127 34.6
Sc20g0003400 Simmondsia chinensis HOM05D001186 ORTHO05D000971 1.7e-06 56.6 66 50.0
AT3G18360 Arabidopsis thaliana HOM05D001186 ORTHO05D000971 2.3e-06 56.2 63 46.0
Cpa.g.sc42.113 Carica papaya HOM05D001186 ORTHO05D000971 2.3e-06 56.2 95 35.8
Cfa018343 Carpinus fangiana HOM05D001186 ORTHO05D000971 2.3e-06 56.2 69 47.8
Eucgr.F02723 Eucalyptus grandis HOM05D001186 ORTHO05D000971 2.3e-06 56.2 73 47.9
FAN22G0160 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.3e-06 56.2 98 38.8
Gohir.D01G189650 Gossypium hirsutum HOM05D001186 ORTHO05D000971 2.3e-06 56.2 74 44.6
Gohir.D07G211466 Gossypium hirsutum HOM05D001186 ORTHO05D000971 2.3e-06 56.2 74 44.6
HanXRQChr12g0364621 Helianthus annuus HOM05D001186 ORTHO05D000971 2.3e-06 56.2 129 33.3
Manes.02G176600 Manihot esculenta HOM05D001186 ORTHO05D000971 2.3e-06 56.2 68 48.5
Nn1g06171 Nelumbo nucifera HOM05D001186 ORTHO05D000971 2.3e-06 56.2 73 47.9
Sabra12G0039700 Salix brachista HOM05D001186 ORTHO05D000971 2.3e-06 56.2 74 44.6
CDE04G3497 Ceratophyllum demersum HOM05D001186 ORTHO05D000971 3.0e-06 55.8 143 28.7
Haze_17728 Corylus avellana HOM05D001186 ORTHO05D000971 3.0e-06 55.8 69 46.4
Duzib116G0881 Durio zibethinus HOM05D001186 ORTHO05D000971 3.0e-06 55.8 66 51.5
HanXRQChr12g0364631 Helianthus annuus HOM05D001186 ORTHO05D000971 3.0e-06 55.8 138 31.2
Oeu001004.1 Olea europaea HOM05D001186 ORTHO05D000971 3.0e-06 55.8 99 37.4
QL10p025510 Quercus lobata HOM05D001186 ORTHO05D000971 3.0e-06 55.8 108 37.0
Sabra05G0049800 Salix brachista HOM05D001186 ORTHO05D000971 3.0e-06 55.8 97 39.2
Cpa.g.sc3.505 Carica papaya HOM05D001186 ORTHO05D000971 3.9e-06 55.5 89 38.2
Cfa019761 Carpinus fangiana HOM05D001186 ORTHO05D000971 3.9e-06 55.5 101 37.6
Haze_18687 Corylus avellana HOM05D001186 ORTHO05D000971 3.9e-06 55.5 73 43.8
Gorai.002G233400 Gossypium raimondii HOM05D001186 ORTHO05D000971 3.9e-06 55.5 74 44.6
Lj1g0004766 Lotus japonicus HOM05D001186 ORTHO05D000971 3.9e-06 55.5 66 45.5
Lj2g0018313 Lotus japonicus HOM05D001186 ORTHO05D000971 3.9e-06 55.5 142 31.0
Manes.01G010900 Manihot esculenta HOM05D001186 ORTHO05D000971 3.9e-06 55.5 82 40.2
VMungo0464G1252 Vigna mungo HOM05D001186 ORTHO05D000971 3.9e-06 55.5 82 41.5
ATR0772G190 Amborella trichopoda HOM05D001186 ORTHO05D000971 5.1e-06 55.1 71 45.1
BcaC01g03684 Brassica carinata HOM05D001186 ORTHO05D000971 5.1e-06 55.1 135 31.1
C03p49650 Brassica napus HOM05D001186 ORTHO05D000971 5.1e-06 55.1 135 31.1
BolC3t17262H Brassica oleracea HOM05D001186 ORTHO05D000971 5.1e-06 55.1 135 31.1
Manes.08G037400 Manihot esculenta HOM05D001186 ORTHO05D000971 5.1e-06 55.1 82 45.1
Nitab4.5_0001674g0050 Nicotiana tabacum HOM05D001186 ORTHO05D000971 5.1e-06 55.1 67 46.3
Os08g0102900 Oryza sativa ssp. japonica HOM05D001186 ORTHO05D000971 5.1e-06 55.1 66 45.5
Sabra15G0039100 Salix brachista HOM05D001186 ORTHO05D000971 5.1e-06 55.1 103 35.0
Sp3g16470 Schrenkiella parvula HOM05D001186 ORTHO05D000971 5.1e-06 55.1 106 35.8
AL3G31640 Arabidopsis lyrata HOM05D001186 ORTHO05D000971 6.6e-06 54.7 60 45.0
A03p40770 Brassica napus HOM05D001186 ORTHO05D000971 6.6e-06 54.7 135 31.1
BraA03t13235Z Brassica rapa HOM05D001186 ORTHO05D000971 6.6e-06 54.7 135 31.1
CSS0038492 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 6.6e-06 54.7 66 47.0
FAN09G1764 Fragaria x ananassa HOM05D004834 ORTHO05D006247 6.6e-06 54.7 135 36.3
Gorai.002G154000 Gossypium raimondii HOM05D001186 ORTHO05D000971 6.6e-06 54.7 84 42.9
Potri.002G070600 Populus trichocarpa HOM05D001186 ORTHO05D000971 6.6e-06 54.7 71 45.1
Duzib084G0272 Durio zibethinus HOM05D001186 ORTHO05D000971 8.6e-06 54.3 73 41.1
Duzib093G1352 Durio zibethinus HOM05D001186 ORTHO05D000971 8.6e-06 54.3 66 47.0
Glyma.13G039800 Glycine max HOM05D001186 ORTHO05D000971 8.6e-06 54.3 65 44.6
Medtr1g028910 Medicago truncatula HOM05D001186 ORTHO05D000971 8.6e-06 54.3 115 35.7
Psat6g227240 Pisum sativum HOM05D001186 ORTHO05D000971 8.6e-06 54.3 48 56.2
Sabra02G0055300 Salix brachista HOM05D001186 ORTHO05D000971 8.6e-06 54.3 71 46.5
TAR579G0002 Trochodendron aralioides HOM05D001186 ORTHO05D000971 8.6e-06 54.3 110 36.4


User provided reference genes

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