Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 4.3e-117 424.9 243 100.0
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 1.4e-112 409.8 215 98.6
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 1.9e-112 409.5 214 98.6
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 6.6e-110 401.0 215 96.7
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 5.6e-109 397.9 215 95.8
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 8.7e-94 347.4 236 88.1
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 2.8e-76 289.3 214 74.3
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 9.0e-75 284.3 219 73.1
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 2.5e-69 266.2 208 71.6
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 9.0e-67 257.7 220 68.6
AT1G66190 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 2.2e-60 236.5 219 63.9
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 2.1e-55 219.9 210 63.3
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 3.7e-52 209.1 207 59.9
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 3.7e-36 156.0 198 51.0
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 8.3e-36 154.8 195 53.3
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 2.4e-35 153.3 194 50.5
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 2.4e-35 153.3 194 50.5
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 2.4e-35 153.3 194 50.5
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 5.3e-35 152.1 194 51.5
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 1.6e-34 150.6 194 51.0
THA.LOC104805631 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 2.0e-34 150.2 213 47.9
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 3.5e-34 149.4 194 50.0
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 2.5e-32 143.3 195 51.8
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 2.7e-31 139.8 196 51.0
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 4.7e-31 139.0 192 49.5
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 6.1e-31 138.7 187 50.3
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 6.1e-31 138.7 194 48.5
THA.LOC104822277 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 2.8e-28 129.8 211 45.0
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 1.6e-10 70.9 199 37.7
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.7e-09 67.4 185 34.6
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 2.3e-09 67.0 189 36.0
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 7.3e-08 62.0 106 41.5
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 1.6e-07 60.8 191 31.9
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 1.6e-07 60.8 182 30.8
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 1.6e-07 60.8 101 41.6
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 2.1e-07 60.5 104 43.3
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 2.8e-07 60.1 181 32.0
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 3.6e-07 59.7 98 44.9
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 6.2e-07 58.9 199 32.7
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 6.2e-07 58.9 98 44.9
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 6.2e-07 58.9 213 31.9
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 6.2e-07 58.9 99 43.4
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 1.1e-06 58.2 154 32.5
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 1.1e-06 58.2 99 40.4
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.4e-06 57.8 99 42.4
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.4e-06 57.8 99 42.4
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 1.4e-06 57.8 99 40.4
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 1.4e-06 57.8 183 31.7
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 1.8e-06 57.4 123 39.8
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 1.8e-06 57.4 99 40.4
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 4.0e-06 56.2 122 34.4
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 5.2e-06 55.8 100 41.0
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 5.2e-06 55.8 195 31.3
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 6.8e-06 55.5 197 32.5
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 8.9e-06 55.1 193 33.2
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 8.9e-06 55.1 100 38.0
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 8.9e-06 55.1 53 49.1


User provided reference genes

Program Settings