Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 2.3e-81 305.4 146 100.0
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 2.3e-81 305.4 146 100.0
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 5.6e-80 300.8 146 99.3
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 3.1e-78 295.0 162 90.1
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 4.0e-78 294.7 151 96.0
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 9.9e-77 290.0 146 94.5
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.9e-75 285.8 146 93.8
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 9.2e-75 283.5 146 91.8
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 6.0e-74 280.8 142 92.3
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 5.1e-73 277.7 146 88.4
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 9.6e-72 273.5 146 88.4
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.2e-71 273.1 146 85.6
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 1.1e-70 270.0 146 85.6
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 1.4e-70 269.6 145 87.6
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 1.5e-69 266.2 146 84.2
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 7.6e-69 263.8 146 84.2
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 8.4e-68 260.4 146 81.5
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 2.1e-66 255.8 145 78.6
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 7.8e-66 253.8 146 80.1
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.7e-65 252.7 146 79.5
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 3.9e-65 251.5 146 79.5
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-64 250.0 146 78.8
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 1.1e-64 250.0 148 79.1
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 7.3e-64 247.3 139 80.6
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 9.6e-64 246.9 137 83.2
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 2.1e-63 245.7 140 80.0
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 2.1e-63 245.7 137 80.3
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 3.6e-63 245.0 137 83.9
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 6.2e-63 244.2 140 78.6
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 5.3e-62 241.1 174 70.1
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 5.3e-62 241.1 140 80.0
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 5.3e-62 241.1 140 80.0
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.5e-61 239.6 140 79.3
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 2.6e-61 238.8 143 76.9
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 3.4e-61 238.4 165 69.7
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 4.5e-61 238.0 146 74.7
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 7.6e-61 237.3 142 74.6
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 7.6e-61 237.3 146 77.4
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.7e-60 236.1 142 73.2
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 2.2e-60 235.7 145 75.9
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.2e-60 235.7 138 77.5
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 2.9e-60 235.3 137 76.6
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.4e-59 232.3 133 76.7
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 3.2e-59 231.9 138 77.5
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 7.1e-59 230.7 138 76.8
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 7.1e-59 230.7 140 74.3
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 1.6e-58 229.6 139 74.8
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 2.1e-58 229.2 145 72.4
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 2.7e-58 228.8 139 74.8
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 6.0e-58 227.6 144 72.9
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 7.9e-58 227.3 143 73.4
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 5.1e-57 224.6 142 69.0
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 5.1e-57 224.6 142 69.0
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 5.1e-57 224.6 137 74.5
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 1.1e-56 223.4 144 71.5
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.1e-56 223.4 146 69.2
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.1e-56 223.4 139 72.7
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 4.3e-56 221.5 139 73.4
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 5.6e-56 221.1 143 69.9
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 7.4e-56 220.7 210 55.7
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 7.4e-56 220.7 137 72.3
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 7.4e-56 220.7 137 72.3
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 7.4e-56 220.7 142 69.0
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.3e-55 219.9 137 75.9
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.3e-55 219.9 145 71.0
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.6e-55 219.5 143 72.0
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.1e-55 219.2 137 71.5
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 3.7e-55 218.4 121 81.8
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 3.7e-55 218.4 142 69.0
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.1e-54 216.9 143 68.5
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.1e-54 216.9 142 68.3
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.1e-54 216.9 146 69.9
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 1.8e-54 216.1 143 68.5
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 5.3e-54 214.5 144 69.4
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 5.3e-54 214.5 143 67.8
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 6.9e-54 214.2 143 67.8
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.2e-53 213.4 143 68.5
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.5e-53 213.0 141 69.5
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 2.6e-53 212.2 143 67.1
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 2.6e-53 212.2 146 67.8
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 4.5e-53 211.5 146 66.4
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 4.5e-53 211.5 140 70.7
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 4.5e-53 211.5 140 70.7
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 7.6e-53 210.7 143 66.4
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 9.9e-53 210.3 143 67.1
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.3e-52 209.9 144 66.0
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 8.4e-52 207.2 146 66.4
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 8.4e-52 207.2 143 66.4
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 1.9e-51 206.1 146 65.8
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 2.4e-51 205.7 141 68.1
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.2e-51 204.9 132 68.2
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.2e-50 203.4 146 63.0
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.2e-50 203.4 120 76.7
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.6e-50 201.4 143 67.8
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 4.6e-50 201.4 121 74.4
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 7.9e-50 200.7 143 63.6
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 1.8e-49 199.5 143 63.6
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.8e-49 199.5 143 63.6
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 2.3e-49 199.1 141 64.5
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 3.9e-49 198.4 139 64.7
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.5e-48 196.4 143 63.6
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.5e-48 196.4 143 62.9
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 2.5e-48 195.7 140 66.4
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 3.3e-48 195.3 141 66.0
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.3e-48 195.3 143 63.6
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 4.3e-48 194.9 137 62.8
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 7.4e-48 194.1 143 62.2
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 1.3e-47 193.4 140 63.6
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.6e-47 193.0 138 65.2
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 2.1e-47 192.6 121 73.6
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 2.1e-47 192.6 143 62.9
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.8e-47 192.2 143 61.5
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 8.2e-47 190.7 119 72.3
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.4e-46 189.9 119 71.4
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.4e-46 189.9 137 63.5
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 1.8e-46 189.5 143 61.5
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 6.9e-46 187.6 144 59.0
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 1.5e-45 186.4 111 74.8
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 3.4e-45 185.3 144 60.4
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 1.3e-44 183.3 140 57.1
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 6.5e-44 181.0 139 58.3
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 1.1e-43 180.3 144 59.7
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.9e-43 179.5 139 56.8
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.2e-43 178.3 143 61.5
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 9.3e-43 177.2 138 60.1
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 9.3e-43 177.2 117 69.2
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.2e-42 176.8 121 69.4
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 4.6e-42 174.9 115 68.7
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 4.6e-42 174.9 121 64.5
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.3e-40 168.3 111 70.3
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.8e-39 165.6 102 71.6
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.8e-39 165.6 137 54.7
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 4.8e-39 164.9 141 56.7
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 4.5e-37 158.3 142 52.8
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.1e-33 144.8 125 52.8
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.1e-33 144.8 125 52.8
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.3e-32 141.7 127 53.5
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 7.7e-29 131.0 85 70.6
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 3.2e-27 125.6 131 49.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 7.2e-27 124.4 132 47.0
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 4.7e-26 121.7 99 55.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 6.1e-26 121.3 99 54.5
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.0e-25 119.0 131 45.0
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.1e-24 117.1 150 46.0
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 5.7e-24 114.8 93 55.9
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.1e-22 109.0 133 38.3
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 9.1e-22 107.5 137 40.9
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 1.0e-20 104.0 143 37.8
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.7e-20 103.2 137 38.0
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.9e-20 102.4 137 38.0
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.2e-19 98.6 134 38.1
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 2.0e-16 89.7 99 49.5
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 9.7e-16 87.4 135 34.8
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 2.2e-15 86.3 54 68.5
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 2.8e-15 85.9 55 70.9
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 3.7e-15 85.5 65 58.5
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 4.8e-15 85.1 59 62.7
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 1.4e-14 83.6 55 69.1
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 1.4e-14 83.6 55 69.1
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 1.4e-14 83.6 55 69.1
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.2e-12 76.3 82 42.7
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 3.8e-12 75.5 112 38.4
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 3.0e-09 65.9 117 35.0
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 1.2e-08 63.9 32 84.4
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 2.2e-07 59.7 49 51.0
HanXRQChr11g0343111 Helianthus annuus HOM05D004462 ORTHO05D005231 4.1e-06 55.5 41 61.0
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 4.1e-06 55.5 63 47.6


User provided reference genes

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